mRNA_P-littoralis_Contig1383.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1383.1.1
Unique NamemRNA_P-littoralis_Contig1383.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1383.1.1 vs. uniprot
Match: A0A6H5KZW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZW8_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.020e-26
Identity = 79/195 (40.51%), Postives = 110/195 (56.41%), Query Frame = 1
Query:   10 KTPKFTGDFVLFKTMFEAFMASVGLAQTLEITNYP---LRIIQGPPRHVLVANYGEPAVAANERALNYLMEATAGANFQVKILTAGSVEEAWTEALNFNLPVSKAEQNDLVKQLEDLRHEDGEDPKLYFLKVDQILSRLRAV-GVHKCDAEILEILRRDLSSEFEIEKRGRLTQPRMTRLQLENKVRSAHADHRL 582
            K P    +F LFK++FE  +A   L+ TL     P   + ++ G PR   V  +GE  V+ +E A  YLM A  GAN Q +IL  G+V  AW  A  F LP+S  EQ  L   L +++ + GEDPK Y L+ D++LS LRAV G    D E+L +LRR+LS+++E      +    +TR  LEN VRS +A+  L
Sbjct:  101 KPPVHDSNFPLFKSLFELLLAREDLSHTLAKPASPDQCIWLLNGLPRSENVCLHGERRVSDHEYAFEYLMRARKGANLQARILAVGTVSGAWEAAQQFCLPMSNFEQEALKLSLTNMKMQLGEDPKEYLLRFDRVLSTLRAVNGDAITDREVLAMLRRNLSADYEQVHILFMANSSLTRKNLENLVRSLYAERDL 295          
BLAST of mRNA_P-littoralis_Contig1383.1.1 vs. uniprot
Match: A0A6H5L089_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L089_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.390e-24
Identity = 64/172 (37.21%), Postives = 103/172 (59.88%), Query Frame = 1
Query:   10 KTPKFTGDFVLFKTMFEAFMASVGLAQTLEI---TNYPLRIIQGPPRHVLVANYGEPAVAANERALNYLMEATAGANFQVKILTAGSVEEAWTEALNFNLPVSKAEQNDLVKQLEDLRHEDGEDPKLYFLKVDQILSRLRAVGVHKCDAEILEILRRDLSSEFEIEKRGRLT 516
            K P   G F+ +      F+A  GL QTL+    T Y + II  P R+ L   +G P V A+ RA  YL+E+T+G++ +  +     V EAWT    ++LP + AEQ  L +QLE +    GE+PKL+F +VD I++ +RAVG+ K + +I++ + R LSS++++E++  L+
Sbjct:  384 KHPNEPGKFMSWSRRMRTFLAVEGLEQTLDHQPPTGY-VHIIGCPDRNYLNRIHGAPLVTAHLRAWGYLVESTSGSDIEETLFACSCVPEAWTAIREWSLPTTDAEQRLLERQLETVEMSPGENPKLFFARVDGIVNTMRAVGIEKSERQIVQTIVRQLSSDYDVERKTTLS 554          
BLAST of mRNA_P-littoralis_Contig1383.1.1 vs. uniprot
Match: A0A6H5KIP6_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP6_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 4.240e-22
Identity = 62/173 (35.84%), Postives = 105/173 (60.69%), Query Frame = 1
Query:   64 FMASVGLAQTLE---ITNYPLRIIQGPPRHVLVANYGEPAVAANERALNYLMEATAGANFQVKILTAGSVEEAWTEALNFNLPVSKAEQNDLVKQLEDLRHEDGEDPKLYFLKVDQILSRLRAVGVHKCDAEILEILRRDLSSEFEIEKRGRLTQPRMTRLQLENKVRSAHAD 573
            F+A   L +TL+    T Y + +I    R  L   +G   VAA++RA  Y++EAT G + + ++     V EAW+    + LP   AE+  LV++LE +    GEDPKL+F +VD +++ ++AVG+ K +  I+ I+ R L+ E++IE++  L  P ++R ++EN VR+A+A+
Sbjct:   84 FLAVEDLERTLDHMPSTGY-VNVISCLDRTYLNQTHGAHLVAAHQRAWGYMLEATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYAN 255          
BLAST of mRNA_P-littoralis_Contig1383.1.1 vs. uniprot
Match: A0A6H5JNE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE4_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 4.420e-22
Identity = 62/173 (35.84%), Postives = 105/173 (60.69%), Query Frame = 1
Query:   64 FMASVGLAQTLE---ITNYPLRIIQGPPRHVLVANYGEPAVAANERALNYLMEATAGANFQVKILTAGSVEEAWTEALNFNLPVSKAEQNDLVKQLEDLRHEDGEDPKLYFLKVDQILSRLRAVGVHKCDAEILEILRRDLSSEFEIEKRGRLTQPRMTRLQLENKVRSAHAD 573
            F+A   L +TL+    T Y + +I    R  L   +G   VAA++RA  Y++EAT G + + ++     V EAW+    + LP   AE+  LV++LE +    GEDPKL+F +VD +++ ++AVG+ K +  I+ I+ R L+ E++IE++  L  P ++R ++EN VR+A+A+
Sbjct:  139 FLAVEDLERTLDHMPSTGY-VNVISCLDRTYLNQTHGAHLVAAHQRAWGYMLEATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYAN 310          
BLAST of mRNA_P-littoralis_Contig1383.1.1 vs. uniprot
Match: A0A6H5L4A7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 4.710e-22
Identity = 62/173 (35.84%), Postives = 105/173 (60.69%), Query Frame = 1
Query:   64 FMASVGLAQTLE---ITNYPLRIIQGPPRHVLVANYGEPAVAANERALNYLMEATAGANFQVKILTAGSVEEAWTEALNFNLPVSKAEQNDLVKQLEDLRHEDGEDPKLYFLKVDQILSRLRAVGVHKCDAEILEILRRDLSSEFEIEKRGRLTQPRMTRLQLENKVRSAHAD 573
            F+A   L +TL+    T Y + +I    R  L   +G   VAA++RA  Y++EAT G + + ++     V EAW+    + LP   AE+  LV++LE +    GEDPKL+F +VD +++ ++AVG+ K +  I+ I+ R L+ E++IE++  L  P ++R ++EN VR+A+A+
Sbjct:   84 FLAVEDLERTLDHMPSTGY-VNVISCLDRTYLNQTHGAHLVAAHQRAWGYMLEATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYAN 255          
BLAST of mRNA_P-littoralis_Contig1383.1.1 vs. uniprot
Match: A0A6H5KYI1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI1_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 4.990e-22
Identity = 62/173 (35.84%), Postives = 105/173 (60.69%), Query Frame = 1
Query:   64 FMASVGLAQTLE---ITNYPLRIIQGPPRHVLVANYGEPAVAANERALNYLMEATAGANFQVKILTAGSVEEAWTEALNFNLPVSKAEQNDLVKQLEDLRHEDGEDPKLYFLKVDQILSRLRAVGVHKCDAEILEILRRDLSSEFEIEKRGRLTQPRMTRLQLENKVRSAHAD 573
            F+A   L +TL+    T Y + +I    R  L   +G   VAA++RA  Y++EAT G + + ++     V EAW+    + LP   AE+  LV++LE +    GEDPKL+F +VD +++ ++AVG+ K +  I+ I+ R L+ E++IE++  L  P ++R ++EN VR+A+A+
Sbjct:   84 FLAVEDLERTLDHMPSTGY-VNVISCLDRTYLNQTHGAHLVAAHQRAWGYMLEATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYAN 255          
BLAST of mRNA_P-littoralis_Contig1383.1.1 vs. uniprot
Match: A0A6H5JBS7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS7_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.810e-20
Identity = 63/194 (32.47%), Postives = 110/194 (56.70%), Query Frame = 1
Query:    7 RKTPKFTGDFVL-FKTMFEAFMASVGLAQTLEITNYPLRIIQGPPRHVLVANYGEPAVAANERALNYLMEATAGANFQVKILTAGSVEEAWTEALNFNLPVSKAEQNDLVKQLEDLRHEDGEDPKLYFLKVDQILSRLRAVGVHKCDAEILEILRRDLSSEFEIEKRGRLTQPRMTRLQLENKVRSAHADHRLS 585
            R  P  T D +L ++  F A+M +  L  T+   +  + ++       L   YG   V  ++R  ++++EA  GA F+  + +  SV EAW    ++ LP   A+   LV +L+++   D EDPKL+F +V Q+ ++LRAVG+ K D E+++IL R L + +++EKR  L++  +TR +L++ VR  +A  + S
Sbjct:   30 RIPPNCTADTLLSWRRRFLAYMDNHDLQHTI-FGSAEVPVVSCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTSLSKRDLTRAELQDVVRGRYATLKAS 222          
BLAST of mRNA_P-littoralis_Contig1383.1.1 vs. uniprot
Match: A0A6H5JU47_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU47_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 4.100e-20
Identity = 62/194 (31.96%), Postives = 110/194 (56.70%), Query Frame = 1
Query:    7 RKTPKFTGD-FVLFKTMFEAFMASVGLAQTLEITNYPLRIIQGPPRHVLVANYGEPAVAANERALNYLMEATAGANFQVKILTAGSVEEAWTEALNFNLPVSKAEQNDLVKQLEDLRHEDGEDPKLYFLKVDQILSRLRAVGVHKCDAEILEILRRDLSSEFEIEKRGRLTQPRMTRLQLENKVRSAHADHRLS 585
            R  P  T D F+ ++  F A++ +  L  T+   +  + ++       L   YG   V  ++R  ++++EA  GA F+  + +  SV EAW    ++ LP   A+   LV +L+++   D EDPKL+F +V Q+ ++LRAVG+ K D E+++IL R L + +++EKR  L++  +TR +L++ VR  +A  + S
Sbjct:   30 RIPPNCTADTFLSWRRRFLAYVDNHNLQHTI-FGSAEVPVVSCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTSLSKRDLTRAELQDVVRGRYATLKAS 222          
BLAST of mRNA_P-littoralis_Contig1383.1.1 vs. uniprot
Match: A0A6H5JN41_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN41_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 5.560e-20
Identity = 62/194 (31.96%), Postives = 110/194 (56.70%), Query Frame = 1
Query:    7 RKTPKFTGD-FVLFKTMFEAFMASVGLAQTLEITNYPLRIIQGPPRHVLVANYGEPAVAANERALNYLMEATAGANFQVKILTAGSVEEAWTEALNFNLPVSKAEQNDLVKQLEDLRHEDGEDPKLYFLKVDQILSRLRAVGVHKCDAEILEILRRDLSSEFEIEKRGRLTQPRMTRLQLENKVRSAHADHRLS 585
            R  P  T D F+ ++  F A++ +  L  T+   +  + ++       L   YG   V  ++R  ++++EA  GA F+  + +  SV EAW    ++ LP   A+   LV +L+++   D EDPKL+F +V Q+ ++LRAVG+ K D E+++IL R L + +++EKR  L++  +TR +L++ VR  +A  + S
Sbjct:  102 RIPPNCTADTFLSWRRRFLAYVDNHNLQHTI-FGSAEVPVVSCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTSLSKRDLTRAELQDVVRGRYATLKAS 294          
BLAST of mRNA_P-littoralis_Contig1383.1.1 vs. uniprot
Match: A0A6H5K2K1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2K1_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 5.900e-20
Identity = 62/194 (31.96%), Postives = 110/194 (56.70%), Query Frame = 1
Query:    7 RKTPKFTGD-FVLFKTMFEAFMASVGLAQTLEITNYPLRIIQGPPRHVLVANYGEPAVAANERALNYLMEATAGANFQVKILTAGSVEEAWTEALNFNLPVSKAEQNDLVKQLEDLRHEDGEDPKLYFLKVDQILSRLRAVGVHKCDAEILEILRRDLSSEFEIEKRGRLTQPRMTRLQLENKVRSAHADHRLS 585
            R  P  T D F+ ++  F A++ +  L  T+   +  + ++       L   YG   V  ++R  ++++EA  GA F+  + +  SV EAW    ++ LP   A+   LV +L+++   D EDPKL+F +V Q+ ++LRAVG+ K D E+++IL R L + +++EKR  L++  +TR +L++ VR  +A  + S
Sbjct:  102 RIPPNCTADTFLSWRRRFLAYVDNHNLQHTI-FGSAEVPVVSCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTSLSKRDLTRAELQDVVRGRYATLKAS 294          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1383.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZW8_9PHAE1.020e-2640.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L089_9PHAE3.390e-2437.21Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KIP6_9PHAE4.240e-2235.84CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JNE4_9PHAE4.420e-2235.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4A7_9PHAE4.710e-2235.84CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KYI1_9PHAE4.990e-2235.84CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JBS7_9PHAE3.810e-2032.47CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JU47_9PHAE4.100e-2031.96CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JN41_9PHAE5.560e-2031.96Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2K1_9PHAE5.900e-2031.96Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1383contigP-littoralis_Contig1383:9440..10036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size597
Hectar predicted targeting categoryother localisation
Exons1
Cds size597
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.3950446-CDS-P-littoralis_Contig1383:9439..100361680789639.3950446-CDS-P-littoralis_Contig1383:9439..10036Pylaiella littoralis U1_48CDSP-littoralis_Contig1383 9440..10036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1383.1.1prot_P-littoralis_Contig1383.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1383 9440..10036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1383.1.1

>prot_P-littoralis_Contig1383.1.1 ID=prot_P-littoralis_Contig1383.1.1|Name=mRNA_P-littoralis_Contig1383.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=199bp
SARKTPKFTGDFVLFKTMFEAFMASVGLAQTLEITNYPLRIIQGPPRHVL
VANYGEPAVAANERALNYLMEATAGANFQVKILTAGSVEEAWTEALNFNL
PVSKAEQNDLVKQLEDLRHEDGEDPKLYFLKVDQILSRLRAVGVHKCDAE
ILEILRRDLSSEFEIEKRGRLTQPRMTRLQLENKVRSAHADHRLSGRTE
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mRNA from alignment at P-littoralis_Contig1383:9440..10036-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1383.1.1 ID=mRNA_P-littoralis_Contig1383.1.1|Name=mRNA_P-littoralis_Contig1383.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=597bp|location=Sequence derived from alignment at P-littoralis_Contig1383:9440..10036- (Pylaiella littoralis U1_48)
AGTGCGAGAAAGACCCCCAAATTCACGGGTGACTTCGTCCTTTTCAAGAC GATGTTCGAAGCGTTCATGGCTAGTGTAGGCCTGGCCCAAACCTTGGAGA TAACCAACTACCCTCTCCGCATCATACAAGGTCCACCTCGCCATGTCCTC GTAGCCAATTACGGGGAACCAGCAGTAGCGGCAAACGAGCGGGCGCTTAA TTACCTCATGGAGGCAACCGCTGGCGCAAACTTCCAAGTCAAGATACTGA CAGCAGGGTCGGTAGAGGAGGCGTGGACAGAAGCCTTAAACTTTAATCTC CCTGTGAGTAAGGCCGAGCAAAACGATCTGGTCAAACAGCTAGAAGACCT GAGGCACGAGGATGGTGAGGACCCCAAGCTATACTTCCTCAAGGTAGACC AGATCCTGAGCCGACTCCGTGCAGTGGGCGTCCACAAGTGCGATGCCGAA ATCCTCGAAATTCTGCGCCGCGACCTTTCCTCCGAGTTCGAAATCGAAAA GCGTGGTAGACTCACCCAACCCAGGATGACACGCTTACAGTTGGAGAACA AAGTACGTTCGGCTCACGCTGATCACCGTCTGAGTGGGAGAACGGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1383:9440..10036-

>mRNA_P-littoralis_Contig1383.1.1 ID=mRNA_P-littoralis_Contig1383.1.1|Name=mRNA_P-littoralis_Contig1383.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=597bp|location=Sequence derived from alignment at P-littoralis_Contig1383:9440..10036- (Pylaiella littoralis U1_48)
AGTGCGAGAAAGACCCCCAAATTCACGGGTGACTTCGTCCTTTTCAAGAC
GATGTTCGAAGCGTTCATGGCTAGTGTAGGCCTGGCCCAAACCTTGGAGA
TAACCAACTACCCTCTCCGCATCATACAAGGTCCACCTCGCCATGTCCTC
GTAGCCAATTACGGGGAACCAGCAGTAGCGGCAAACGAGCGGGCGCTTAA
TTACCTCATGGAGGCAACCGCTGGCGCAAACTTCCAAGTCAAGATACTGA
CAGCAGGGTCGGTAGAGGAGGCGTGGACAGAAGCCTTAAACTTTAATCTC
CCTGTGAGTAAGGCCGAGCAAAACGATCTGGTCAAACAGCTAGAAGACCT
GAGGCACGAGGATGGTGAGGACCCCAAGCTATACTTCCTCAAGGTAGACC
AGATCCTGAGCCGACTCCGTGCAGTGGGCGTCCACAAGTGCGATGCCGAA
ATCCTCGAAATTCTGCGCCGCGACCTTTCCTCCGAGTTCGAAATCGAAAA
GCGTGGTAGACTCACCCAACCCAGGATGACACGCTTACAGTTGGAGAACA
AAGTACGTTCGGCTCACGCTGATCACCGTCTGAGTGGGAGAACGGAA
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