mRNA_P-littoralis_Contig1380.5.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1380.5.2
Unique NamemRNA_P-littoralis_Contig1380.5.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: D8LHB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB6_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.860e-21
Identity = 64/169 (37.87%), Postives = 91/169 (53.85%), Query Frame = 1
Query:  382 HPGASLRVGEFLDGKLRSPDERSVVFASPVDASLIFT-------------TTADAPAT-KVLISADPKKVKRVLQLRADI-----EEENSSGRSETGK---LARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
            HP  SL+VGE L G L SP   S +FAS  D +++F               T   P T   L+++DP KV +   +RA++      E  +    ++GK   LA +  +MPFG+ GFLR+RAR   + ++G+  + +T RG +EGS+DG  V RK   SW GY  KD SY
Sbjct:  137 HPALSLKVGEVLTGTLMSPTMGSRIFASREDGAIVFAKATGEPPRDADGRVTGPTPETITTLVASDPGKVAKRSAIRAELLAEELHERTAQAEGKSGKRGALATIAGWMPFGKGGFLRRRAREHAKVHMGEVNLYVTNRGHLEGSVDGTRVARKSGPSWFGYRTKDPSY 305          
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: A0A6H5LDV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDV1_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.290e-18
Identity = 57/157 (36.31%), Postives = 88/157 (56.05%), Query Frame = 1
Query:  421 GKLRSPDERSVVFASPVDASLIFTT-------------TADAPATK-VLISADPKKVKRVLQLRADIEEENSSGRS---------ETGKLARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
            GKL +P + S+++ASP+D S+I  T             T   P  K VL+ A+ +K+   L LR++I E N   R          + GK+  ++ F+PFG+ GF  +RAR   EA++G+ T+S+T +G +E ++DG TV RK   SW G+ + D SY
Sbjct:    2 GKLLNPAKTSMLYASPIDGSVIHATANGKAPHDKDDDMTGQVPHGKHVLLKANSRKMLNALGLRSEIFEANLEKRKAALEGRELPKEGKVDTLMGFLPFGKNGFRGRRAREHAEAHMGEATLSLTKKGNLEVAVDGMTVLRKSGPSWFGFRKSDSSY 158          
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: A0A6H5L4D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D4_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 5.660e-16
Identity = 64/182 (35.16%), Postives = 95/182 (52.20%), Query Frame = 1
Query:  343 TYTHEPSPAEMLDHPGASLRVGEFLDGKLRSPDERSVVFASPVDASLIFTTT-------ADAPAT-------KVLISADPKKVKRVLQLRAD-----IEEENSSGRSET---GKLARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
            +YTH         HP      G+ L  +L +P   S+ +ASP D S+I  T        AD   T       + L++A+P+K+ +V  LR++     +E++  +    T   GKLA ++ FMPFG+ GFLR+RAR  VEA +G+ T+SIT +G +  S+DG  V RK      G+   D SY
Sbjct:  218 SYTHPGPTVPPRLHP-----EGQVLLARLLNPARTSMAYASPTDGSVILATAIGNAPRDADGNTTGPVTQNNRTLLTANPRKMSKVRALRSENIVAGLEKKRVAREGRTLREGKLATLMGFMPFGKHGFLRRRAREHVEAYMGEATLSITNKGGLGVSVDGIVVLRKSGPYCFGFRRTDRSY 394          
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: D7G9B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B0_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.140e-14
Identity = 54/163 (33.13%), Postives = 92/163 (56.44%), Query Frame = 1
Query:  361 SPAEMLDHPGASLRVGEFLDGKLRSPDERSVVFASPVDASLIFTTTADAPA-TKVLISADPKKVKRVLQLRAD-----IEEENSSGRSET---GKLARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
            +PA + ++P + + + +F+               +P DA     TT   P   + L++A+P+K+ +V  LR++     +E++ ++    T   GK+A ++ F+PFG+ GFLR+RAR   EA++G+ T+SIT +G +E S+DG  V RK   SW G+   D SY
Sbjct:  318 APANVGNNPASGMSIADFM--------------MAPRDAD--GNTTGPVPQKNRTLLTANPRKMSKVRALRSENIAARLEKKRAALEGRTLRRGKVATLMGFLPFGKHGFLRRRAREHAEAHMGEATLSITKKGGLEVSVDGIVVLRKSGPSWFGFRRTDRSY 464          
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: D7FXU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU8_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.390e-14
Identity = 49/146 (33.56%), Postives = 75/146 (51.37%), Query Frame = 1
Query:  451 VVFASPVDASLIFTTTADAP--------------ATKVLISADPKKVKRVLQLRADIEEENSSGRSET--------GKLARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
            +V+A+ +D S++  T    P                + L+ A P+ + +V  LRA+I EE      E          K+  V+ F+PFG+ GF R+RAR    A+LG+ T+S+T  G +E S+DG  V RK   SW G+ +KD +Y
Sbjct:    1 MVYATSIDGSVVHATATGTPPGDLEDRTIDPVSLTRRTLLEAIPRCMSKVEGLRAEIMEEREEAEKEAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHAAAHLGEATLSVTNTGDLEVSVDGFLVLRKSGPSWFGFRQKDSTY 146          
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: D7G0T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T0_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 7.320e-13
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  568 RADIEEENSSGRSET-GKLARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
            R + E+E   GR  T  K+  V+ F+PFG+ GF R+RAR  V A+LG+ T+S+T +G +E S+DG  V RK   SW G+ +KD +Y
Sbjct:    4 RDEAEKEAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHVAAHLGEATLSVTNKGDLEVSVDGSIVLRKSRPSWFGFRQKDSTY 89          
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: D7FMM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM4_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 7.930e-13
Identity = 47/149 (31.54%), Postives = 77/149 (51.68%), Query Frame = 1
Query:  442 ERSVVFASPVDASLIFTTTADAP--------------ATKVLISADPKKVKRVLQLRADIEEENSSGRS--------ETGKLARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
            E ++V+A+ +D S++  T    P                + L+ A+P+++  V  LRA+I  E              +  K+  V+ F+PFG+ GF R+RAR    A+LG+  +S+T +G +E S+DG  V RK   SW G+ +KD +Y
Sbjct:  310 ETAMVYATSIDGSVVHATATGTPPGDLEDRSIDPVSQTRRTLLEANPQRMSIVEGLRAEIVAETEEAEKAAVEGQGLKRSKMVTVLGFLPFGKHGFRRRRARERAAAHLGEAALSVTNKGDLEVSVDGSIVLRKSGPSWFGFRKKDSTY 458          
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: D7G9A5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A5_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 3.190e-12
Identity = 38/87 (43.68%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  571 ADIEEENSSGRSET---GKLARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
            A +E++ ++   +T   GK+A ++ F+PFG+ GFLR+RAR   EA++G+ T+SIT +G +E S+DG  V RK   SW G+   D SY
Sbjct:   14 ARLEKKKAALEGQTLRRGKVATLMGFLPFGKHGFLRRRAREHAEAHVGEATLSITKKGGLEVSVDGTVVLRKSGPSWFGFRRTDRSY 100          
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: D8LJ57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ57_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.640e-12
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  496 TADAPATK-VLISADPKKVKRVLQLRADIEEENSSGRS---------ETGKLARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
            T   P  K VL+ A+ +K+     LR++I E N   R          + GK+A ++ F+P G+ GF R+RAR   EA+LG+ T+S+T +G +E ++DG TV RK   SW G+   D SY
Sbjct:  376 TGQVPHEKHVLLKANARKMLNAQGLRSEIFEANLEKRKAALEGRELPKKGKVAALMGFLPLGKNGFRRRRAREHAEAHLGEATLSLTTKGNLEVAVDGTTVLRKSGPSWFGFRRSDSSY 494          
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: D7FTM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM0_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.450e-11
Identity = 45/146 (30.82%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  451 VVFASPVDASLIFTT-------------TADAPATKV-LISADPKKVKRVLQLRADI-----EEENSSGRSET---GKLARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
            +V+A+P D S++F T             T   P  ++ L++A+ + + +    R++I      ++N+     T    K++  + F+PFG+ GFL +RAR   EA+LG+ T+ +T++G++E S+DG  V RK+  S+ G+   D SY
Sbjct:    1 MVYAAPADGSVVFATSTGRVPRDEEGRATGSLPQKRLTLLAANERLMAKAEDFRSEIILRRLVKKNALREGRTLKKSKMSTFMGFLPFGKRGFLHRRARDRAEAHLGEATLKLTSKGILEVSVDGTVVLRKKGPSYFGFRRTDPSY 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LHB6_ECTSI1.860e-2137.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LDV1_9PHAE2.290e-1836.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4D4_9PHAE5.660e-1635.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9B0_ECTSI1.140e-1433.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXU8_ECTSI1.390e-1433.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0T0_ECTSI7.320e-1345.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMM4_ECTSI7.930e-1331.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G9A5_ECTSI3.190e-1243.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJ57_ECTSI3.640e-1238.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTM0_ECTSI2.450e-1130.82Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1380contigP-littoralis_Contig1380:11347..12431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size826
Hectar predicted targeting categoryother localisation
Exons2
Cds size822
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.264418-CDS-P-littoralis_Contig1380:11348..114291680789639.264418-CDS-P-littoralis_Contig1380:11348..11429Pylaiella littoralis U1_48CDSP-littoralis_Contig1380 11349..11429 -
1680789639.2758024-CDS-P-littoralis_Contig1380:11690..124311680789639.2758024-CDS-P-littoralis_Contig1380:11690..12431Pylaiella littoralis U1_48CDSP-littoralis_Contig1380 11691..12431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1380.5.2prot_P-littoralis_Contig1380.5.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1380 11349..12431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1380.5.2

>prot_P-littoralis_Contig1380.5.2 ID=prot_P-littoralis_Contig1380.5.2|Name=mRNA_P-littoralis_Contig1380.5.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=274bp
AAATASITATNTATRGDAILPNGRDASTTSGGKDEAIDIDQAESGGEFAI
SAPSLRPDARSAGEPQQRFVGEISGGGGGTVTTQPSCIDDAEGQCLRTST
SNTDSSGSGSGSFGTYTHEPSPAEMLDHPGASLRVGEFLDGKLRSPDERS
VVFASPVDASLIFTTTADAPATKVLISADPKKVKRVLQLRADIEEENSSG
RSETGKLARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGS
MDGRTVFRKRMDSWLGYLEKDGSY
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mRNA from alignment at P-littoralis_Contig1380:11347..12431-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1380.5.2 ID=mRNA_P-littoralis_Contig1380.5.2|Name=mRNA_P-littoralis_Contig1380.5.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1085bp|location=Sequence derived from alignment at P-littoralis_Contig1380:11347..12431- (Pylaiella littoralis U1_48)
GCCGCCGCTACCGCCTCCATCACCGCCACCAACACCGCTACGAGGGGCGA CGCGATTCTCCCGAACGGCCGAGACGCCTCGACCACCAGCGGCGGGAAAG ACGAGGCAATCGACATCGACCAGGCGGAAAGCGGCGGTGAATTCGCCATC TCCGCGCCCAGCCTCCGCCCCGACGCCAGGAGTGCCGGCGAGCCGCAGCA GCGCTTCGTCGGAGAAATCAGCGGCGGAGGCGGCGGCACGGTCACCACCC AGCCGTCCTGTATCGACGATGCGGAGGGCCAATGCCTTCGTACTTCAACA AGCAACACCGACAGCAGCGGCAGCGGCAGCGGCAGCTTCGGCACGTACAC GCACGAGCCCTCCCCCGCAGAAATGCTCGACCACCCAGGTGCTTCTCTGA GAGTGGGCGAATTCCTTGACGGCAAGCTGCGGAGCCCCGACGAACGGTCA GTTGTTTTCGCCAGCCCGGTCGATGCTTCGCTGATTTTCACCACCACGGC GGATGCGCCGGCGACCAAGGTGCTAATCTCGGCCGACCCTAAGAAAGTCA AACGGGTTCTTCAGCTGCGAGCGGACATTGAGGAGGAGAACAGCAGCGGA AGGAGCGAGACGGGCAAGCTGGCGCGCGTCATCCGGTTTATGCCGTTCGG CAGGGCCGGGTTCCTCCGGCAACGAGCCAGGCGGGTGGTCGAGGCTAACC TTGGCAAGCGGACCATATCCATCACCGCGAGAGGCGTCGTGGTGAGTAGG GCAGTGAGGGTATCCTGTGGGTTTCTTAAGAGAGGTTAACACGCCCTTCG CTGAAACGACATGCTCATGCTGCGCGAGTCAGCACGCACGTCCTTGTGCT TGATATTTCCCCCCCGAGTTTCGTTGTCGTGTTCTGCGGCTTGAACAAGC AACTCTCTTGACTAATGCAATCTCCCTCCCCCCCTCCCCGTGCGCCCCGC TCCCCCCGCCCCCTCTGGCACGCCATGAACCGACGCCTGCTCAACTCATC AGGAAGGTTCGATGGACGGCCGGACCGTTTTCCGGAAGCGCATGGATTCG TGGCTCGGGTACCTGGAGAAGGACGGGTCTTACGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1380:11347..12431-

>mRNA_P-littoralis_Contig1380.5.2 ID=mRNA_P-littoralis_Contig1380.5.2|Name=mRNA_P-littoralis_Contig1380.5.2|organism=Pylaiella littoralis U1_48|type=CDS|length=822bp|location=Sequence derived from alignment at P-littoralis_Contig1380:11347..12431- (Pylaiella littoralis U1_48)
GCCGCCGCTACCGCCTCCATCACCGCCACCAACACCGCTACGAGGGGCGA
CGCGATTCTCCCGAACGGCCGAGACGCCTCGACCACCAGCGGCGGGAAAG
ACGAGGCAATCGACATCGACCAGGCGGAAAGCGGCGGTGAATTCGCCATC
TCCGCGCCCAGCCTCCGCCCCGACGCCAGGAGTGCCGGCGAGCCGCAGCA
GCGCTTCGTCGGAGAAATCAGCGGCGGAGGCGGCGGCACGGTCACCACCC
AGCCGTCCTGTATCGACGATGCGGAGGGCCAATGCCTTCGTACTTCAACA
AGCAACACCGACAGCAGCGGCAGCGGCAGCGGCAGCTTCGGCACGTACAC
GCACGAGCCCTCCCCCGCAGAAATGCTCGACCACCCAGGTGCTTCTCTGA
GAGTGGGCGAATTCCTTGACGGCAAGCTGCGGAGCCCCGACGAACGGTCA
GTTGTTTTCGCCAGCCCGGTCGATGCTTCGCTGATTTTCACCACCACGGC
GGATGCGCCGGCGACCAAGGTGCTAATCTCGGCCGACCCTAAGAAAGTCA
AACGGGTTCTTCAGCTGCGAGCGGACATTGAGGAGGAGAACAGCAGCGGA
AGGAGCGAGACGGGCAAGCTGGCGCGCGTCATCCGGTTTATGCCGTTCGG
CAGGGCCGGGTTCCTCCGGCAACGAGCCAGGCGGGTGGTCGAGGCTAACC
TTGGCAAGCGGACCATATCCATCACCGCGAGAGGCGTCGTGGAAGGTTCG
ATGGACGGCCGGACCGTTTTCCGGAAGCGCATGGATTCGTGGCTCGGGTA
CCTGGAGAAGGACGGGTCTTAC
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