mRNA_P-littoralis_Contig1380.5.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: D8LHB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB6_ECTSI) HSP 1 Score: 101 bits (252), Expect = 1.860e-21 Identity = 64/169 (37.87%), Postives = 91/169 (53.85%), Query Frame = 1
Query: 382 HPGASLRVGEFLDGKLRSPDERSVVFASPVDASLIFT-------------TTADAPAT-KVLISADPKKVKRVLQLRADI-----EEENSSGRSETGK---LARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
HP SL+VGE L G L SP S +FAS D +++F T P T L+++DP KV + +RA++ E + ++GK LA + +MPFG+ GFLR+RAR + ++G+ + +T RG +EGS+DG V RK SW GY KD SY
Sbjct: 137 HPALSLKVGEVLTGTLMSPTMGSRIFASREDGAIVFAKATGEPPRDADGRVTGPTPETITTLVASDPGKVAKRSAIRAELLAEELHERTAQAEGKSGKRGALATIAGWMPFGKGGFLRRRAREHAKVHMGEVNLYVTNRGHLEGSVDGTRVARKSGPSWFGYRTKDPSY 305
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: A0A6H5LDV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDV1_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 2.290e-18 Identity = 57/157 (36.31%), Postives = 88/157 (56.05%), Query Frame = 1
Query: 421 GKLRSPDERSVVFASPVDASLIFTT-------------TADAPATK-VLISADPKKVKRVLQLRADIEEENSSGRS---------ETGKLARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
GKL +P + S+++ASP+D S+I T T P K VL+ A+ +K+ L LR++I E N R + GK+ ++ F+PFG+ GF +RAR EA++G+ T+S+T +G +E ++DG TV RK SW G+ + D SY
Sbjct: 2 GKLLNPAKTSMLYASPIDGSVIHATANGKAPHDKDDDMTGQVPHGKHVLLKANSRKMLNALGLRSEIFEANLEKRKAALEGRELPKEGKVDTLMGFLPFGKNGFRGRRAREHAEAHMGEATLSLTKKGNLEVAVDGMTVLRKSGPSWFGFRKSDSSY 158
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: A0A6H5L4D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D4_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 5.660e-16 Identity = 64/182 (35.16%), Postives = 95/182 (52.20%), Query Frame = 1
Query: 343 TYTHEPSPAEMLDHPGASLRVGEFLDGKLRSPDERSVVFASPVDASLIFTTT-------ADAPAT-------KVLISADPKKVKRVLQLRAD-----IEEENSSGRSET---GKLARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
+YTH HP G+ L +L +P S+ +ASP D S+I T AD T + L++A+P+K+ +V LR++ +E++ + T GKLA ++ FMPFG+ GFLR+RAR VEA +G+ T+SIT +G + S+DG V RK G+ D SY
Sbjct: 218 SYTHPGPTVPPRLHP-----EGQVLLARLLNPARTSMAYASPTDGSVILATAIGNAPRDADGNTTGPVTQNNRTLLTANPRKMSKVRALRSENIVAGLEKKRVAREGRTLREGKLATLMGFMPFGKHGFLRRRAREHVEAYMGEATLSITNKGGLGVSVDGIVVLRKSGPYCFGFRRTDRSY 394
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: D7G9B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B0_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 1.140e-14 Identity = 54/163 (33.13%), Postives = 92/163 (56.44%), Query Frame = 1
Query: 361 SPAEMLDHPGASLRVGEFLDGKLRSPDERSVVFASPVDASLIFTTTADAPA-TKVLISADPKKVKRVLQLRAD-----IEEENSSGRSET---GKLARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
+PA + ++P + + + +F+ +P DA TT P + L++A+P+K+ +V LR++ +E++ ++ T GK+A ++ F+PFG+ GFLR+RAR EA++G+ T+SIT +G +E S+DG V RK SW G+ D SY
Sbjct: 318 APANVGNNPASGMSIADFM--------------MAPRDAD--GNTTGPVPQKNRTLLTANPRKMSKVRALRSENIAARLEKKRAALEGRTLRRGKVATLMGFLPFGKHGFLRRRAREHAEAHMGEATLSITKKGGLEVSVDGIVVLRKSGPSWFGFRRTDRSY 464
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: D7FXU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU8_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 1.390e-14 Identity = 49/146 (33.56%), Postives = 75/146 (51.37%), Query Frame = 1
Query: 451 VVFASPVDASLIFTTTADAP--------------ATKVLISADPKKVKRVLQLRADIEEENSSGRSET--------GKLARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
+V+A+ +D S++ T P + L+ A P+ + +V LRA+I EE E K+ V+ F+PFG+ GF R+RAR A+LG+ T+S+T G +E S+DG V RK SW G+ +KD +Y
Sbjct: 1 MVYATSIDGSVVHATATGTPPGDLEDRTIDPVSLTRRTLLEAIPRCMSKVEGLRAEIMEEREEAEKEAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHAAAHLGEATLSVTNTGDLEVSVDGFLVLRKSGPSWFGFRQKDSTY 146
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: D7G0T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T0_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 7.320e-13 Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1
Query: 568 RADIEEENSSGRSET-GKLARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
R + E+E GR T K+ V+ F+PFG+ GF R+RAR V A+LG+ T+S+T +G +E S+DG V RK SW G+ +KD +Y
Sbjct: 4 RDEAEKEAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHVAAHLGEATLSVTNKGDLEVSVDGSIVLRKSRPSWFGFRQKDSTY 89
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: D7FMM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM4_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 7.930e-13 Identity = 47/149 (31.54%), Postives = 77/149 (51.68%), Query Frame = 1
Query: 442 ERSVVFASPVDASLIFTTTADAP--------------ATKVLISADPKKVKRVLQLRADIEEENSSGRS--------ETGKLARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
E ++V+A+ +D S++ T P + L+ A+P+++ V LRA+I E + K+ V+ F+PFG+ GF R+RAR A+LG+ +S+T +G +E S+DG V RK SW G+ +KD +Y
Sbjct: 310 ETAMVYATSIDGSVVHATATGTPPGDLEDRSIDPVSQTRRTLLEANPQRMSIVEGLRAEIVAETEEAEKAAVEGQGLKRSKMVTVLGFLPFGKHGFRRRRARERAAAHLGEAALSVTNKGDLEVSVDGSIVLRKSGPSWFGFRKKDSTY 458
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: D7G9A5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A5_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 3.190e-12 Identity = 38/87 (43.68%), Postives = 58/87 (66.67%), Query Frame = 1
Query: 571 ADIEEENSSGRSET---GKLARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
A +E++ ++ +T GK+A ++ F+PFG+ GFLR+RAR EA++G+ T+SIT +G +E S+DG V RK SW G+ D SY
Sbjct: 14 ARLEKKKAALEGQTLRRGKVATLMGFLPFGKHGFLRRRAREHAEAHVGEATLSITKKGGLEVSVDGTVVLRKSGPSWFGFRRTDRSY 100
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: D8LJ57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ57_ECTSI) HSP 1 Score: 76.6 bits (187), Expect = 3.640e-12 Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 1
Query: 496 TADAPATK-VLISADPKKVKRVLQLRADIEEENSSGRS---------ETGKLARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
T P K VL+ A+ +K+ LR++I E N R + GK+A ++ F+P G+ GF R+RAR EA+LG+ T+S+T +G +E ++DG TV RK SW G+ D SY
Sbjct: 376 TGQVPHEKHVLLKANARKMLNAQGLRSEIFEANLEKRKAALEGRELPKKGKVAALMGFLPLGKNGFRRRRAREHAEAHLGEATLSLTTKGNLEVAVDGTTVLRKSGPSWFGFRRSDSSY 494
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Match: D7FTM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM0_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 2.450e-11 Identity = 45/146 (30.82%), Postives = 81/146 (55.48%), Query Frame = 1
Query: 451 VVFASPVDASLIFTT-------------TADAPATKV-LISADPKKVKRVLQLRADI-----EEENSSGRSET---GKLARVIRFMPFGRAGFLRQRARRVVEANLGKRTISITARGVVEGSMDGRTVFRKRMDSWLGYLEKDGSY 822
+V+A+P D S++F T T P ++ L++A+ + + + R++I ++N+ T K++ + F+PFG+ GFL +RAR EA+LG+ T+ +T++G++E S+DG V RK+ S+ G+ D SY
Sbjct: 1 MVYAAPADGSVVFATSTGRVPRDEEGRATGSLPQKRLTLLAANERLMAKAEDFRSEIILRRLVKKNALREGRTLKKSKMSTFMGFLPFGKRGFLHRRARDRAEAHLGEATLKLTSKGILEVSVDGTVVLRKKGPSYFGFRRTDPSY 146 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1380.5.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1380.5.2 >prot_P-littoralis_Contig1380.5.2 ID=prot_P-littoralis_Contig1380.5.2|Name=mRNA_P-littoralis_Contig1380.5.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=274bp AAATASITATNTATRGDAILPNGRDASTTSGGKDEAIDIDQAESGGEFAIback to top mRNA from alignment at P-littoralis_Contig1380:11347..12431- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1380.5.2 ID=mRNA_P-littoralis_Contig1380.5.2|Name=mRNA_P-littoralis_Contig1380.5.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1085bp|location=Sequence derived from alignment at P-littoralis_Contig1380:11347..12431- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1380:11347..12431- >mRNA_P-littoralis_Contig1380.5.2 ID=mRNA_P-littoralis_Contig1380.5.2|Name=mRNA_P-littoralis_Contig1380.5.2|organism=Pylaiella littoralis U1_48|type=CDS|length=822bp|location=Sequence derived from alignment at P-littoralis_Contig1380:11347..12431- (Pylaiella littoralis U1_48)back to top |