mRNA_P-littoralis_Contig138.5.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE) HSP 1 Score: 255 bits (651), Expect = 3.730e-76 Identity = 142/232 (61.21%), Postives = 160/232 (68.97%), Query Frame = 1
Query: 1393 MLAVIHQSHDGTR--VGVDDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEF-RDERVMATWPRTGGR*QR-RGRTLNNRTCGRTVWMLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQKKH-VYHGGEICKDGSIEDEINHLLPAQQPGNARPS-------GGGLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
MLA I Q HDG R V +DDG CSDWFDVGQ LRQGC LAPL FNLF AAMLM AF E +D VMA + + + +GR +++W +PKTETMCMLA+G+EACSFTI+A GM F+QKK VY GG+IC+DGSIE EINH + R S GG LRLKVRLLQAE VETLLYGCVTW LKP E RKLR+ HHFFLLRCIGW KR R DRP S
Sbjct: 1 MLAAILQFHDGMRACVRMDDGRCSDWFDVGQGLRQGCNLAPLLFNLFIAAMLMAAFAEISKDAEVMADMAKVKRKVTKGKGRNARLVEAVKSIW----KPKTETMCMLAKGMEACSFTIDAVGMVFKQKKDFVYLGGKICQDGSIEGEINHRVQRAHACFRRNSQAMYDRPGGPLRLKVRLLQAEVVETLLYGCVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERKDRPLS 228
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5JZD4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD4_9PHAE) HSP 1 Score: 196 bits (498), Expect = 3.430e-50 Identity = 123/287 (42.86%), Postives = 152/287 (52.96%), Query Frame = 1
Query: 1345 RELLWSVLKQLGVPLNMLAVIHQSHDG--TRVGVDDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEF-RDERVMATWPRTGGR*Q---RRGRTLNNRTC----GRTVW---------------------------------MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQK-KHVYHGGEICKDGSIEDEINHLLPAQQPGNARPSGG-------GLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
R+LLW VL++ GVP MLAVI H+G RV DDG S+WFDVGQ LRQGC LAPL FNLFFAAMLMVA EF +D V A + G + + +GR+ +T +W ++VSEPKTE MCML +G+E FT++AAG ++Q + VY G I DG + EI R S +LK+RLLQAE VETLLYGC +W L + KL H FL RCIGW+KR R+DRP S
Sbjct: 229 RDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPNVTANMIKIGTQVEYTGNKGRSAGKKTTVVIDAEALWAMLYADDAAIVSRSPESLEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEEHPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTTEHYAKLNETHRQFLTRCIGWSKRKRSDRPLS 515
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5K8E6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8E6_9PHAE) HSP 1 Score: 193 bits (490), Expect = 3.800e-50 Identity = 121/287 (42.16%), Postives = 153/287 (53.31%), Query Frame = 1
Query: 1345 RELLWSVLKQLGVPLNMLAVIHQSHDG--TRVGVDDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEF-RDERVMATWPRTGGR*Q---RRGRTLNNRTC----GRTVW---------------------------------MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQK-KHVYHGGEICKDGSIEDEINHLLPAQQPGNARPSGG-------GLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
R+LLW VL++ GVP MLAVI H+G RV DDG S+WFDVGQ LR+GC LAPL FNLFFAAMLMVA EF +D +V A + G + + ++GR+ +T +W ++VSEP TE MCML +G+E FT++AAG + Q + VY G I DG ++ EI R S +LK+RLLQAE VETLLYGC +W L + KL H FL RCIGW+KR R+DRP S
Sbjct: 188 RDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRKGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTADMVKIGTQVEYTGKKGRSERKKTTVVTDAEALWAMLYADEAAIVSRSPESLEKMMSVIVRAAGLFGVMVSEPTTEIMCMLPKGIEERPFTVSAAGQTYNQTDRFVYLGRTISADGKVDREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLS 474
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5KKG8_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG8_9PHAE) HSP 1 Score: 188 bits (478), Expect = 5.450e-50 Identity = 120/287 (41.81%), Postives = 152/287 (52.96%), Query Frame = 1
Query: 1345 RELLWSVLKQLGVPLNMLAVIHQSHDG--TRVGVDDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEF-RDERVMATWPRTGGR*Q---RRGRTLNNRTC----GRTVW---------------------------------MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQK-KHVYHGGEICKDGSIEDEINHLLPAQQPGNARPSGG-------GLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
R+LLW VL++ GVP MLAVI +G RV DDG S+WFDVGQ LRQGC LA L FNLFFAA+LMVA EF +D +V A + G + + ++GR+ +T +W ++VSEPKTE MCML +G+E FT++AAG ++Q + VY G I DG + EI R S +LK+RLLQAE VETLLYGC +W L + KL H FL RCIGW+KR R+DRP S
Sbjct: 28 RDLLWDVLRRFGVPPKMLAVIRHLPEGMRARVRTDDGQHSEWFDVGQGLRQGCNLARLLFNLFFAAVLMVAVAEFDKDRKVTADMVKIGTQVENTGKKGRSAGKKTTVVTDAEALWAMLYADDAAIVSRSPESLEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEERPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLS 314
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5KKU2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKU2_9PHAE) HSP 1 Score: 195 bits (495), Expect = 6.980e-50 Identity = 122/287 (42.51%), Postives = 153/287 (53.31%), Query Frame = 1
Query: 1345 RELLWSVLKQLGVPLNMLAVIHQSHDG--TRVGVDDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEF-RDERVMATWPRTGGR*Q---RRGRTLNNRTC----GRTVW---------------------------------MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQK-KHVYHGGEICKDGSIEDEINHLLPAQQPGNARPSGG-------GLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
R+LLW VL++ GVP MLAVI H+G RV DDG S+WFDVGQ LRQGC LAPL FNLFFAAMLMVA EF +D +V A + G + + ++GR+ +T +W ++VSEPKTE MCML +G+E FT++AAG ++Q + VY G I DG + EI R S + K+RLLQAE VETLLYGC +W L + KL H FL RCIGW+KR R+DRP S
Sbjct: 332 RDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTADMVKIGTQVEYTGKKGRSAGRKTTVVTDAEALWAMLYADDAAIVSRSPESLEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEEHPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQHKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLS 618
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5K8M1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M1_9PHAE) HSP 1 Score: 195 bits (495), Expect = 1.360e-49 Identity = 120/280 (42.86%), Postives = 150/280 (53.57%), Query Frame = 1
Query: 1345 RELLWSVLKQLGVPLNMLAVIHQSHDG--TRVGVDDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEF-RDERVMATWPRTGGR*Q---RRGRTLNNRTC----GRTVW---------------------------------MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQK-KHVYHGGEICKDGSIEDEINHLLPAQQPGNARPSGGGLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
R+LLW VL++ GVP MLAVI H+G RV DDG S+WFDVGQ LRQGC LAPL FNLFFAAMLMVA EF +D +V A + G + + ++GR+ +T +W ++VSEPKTE MCML +G+E FT++AAG ++Q + VY G IC DG D +LK+RLLQAE VETLLYGC +W L + KL H FL RCI W+KR R+DRP S
Sbjct: 463 RDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTADMVKIGTQVEYTGKKGRSAGKKTTVVTDAEALWAMLYADDAAIVSRSPESLEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEERPFTVSAAGQTYKQTDQFVYLGRTICADGRRADR--------------------QLKIRLLQAEEVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCISWSKRKRSDRPLS 722
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5JD10_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD10_9PHAE) HSP 1 Score: 196 bits (499), Expect = 4.760e-49 Identity = 122/287 (42.51%), Postives = 149/287 (51.92%), Query Frame = 1
Query: 1345 RELLWSVLKQLGVPLNMLAVIHQSHDG--TRVGVDDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEFRDE--------RVMATWPRTGGR*QRRGRTLNNRTCGRTVW---------------------------------MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQK-KHVYHGGEICKDGSIEDEINHLLPAQQPGNARPSGG-------GLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
R+LLW VL++ GVP MLAVI H+G RV DDG SDWFDVGQ LRQGC LAPL FNLFFAAMLMVA EF+ +V + TG + + G+ T +W ++VSEPKTE MCML +G+E FT++AAG ++Q + VY G I DG + EI R S +LK+RLLQAE VETLLYGC +W L + KL H FL RCIGW+KR R+DRP S
Sbjct: 884 RDLLWDVLRRFGVPPTMLAVIRHFHEGMRARVRTDDGQYSDWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFKVTADMVKIWTQVDGVYIHTGNKDRSAGKKTTVVTDAEALWAMLYADDAAIVSRSPESLEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEEHLFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLS 1170
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5JM98_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM98_9PHAE) HSP 1 Score: 194 bits (493), Expect = 2.340e-48 Identity = 122/287 (42.51%), Postives = 152/287 (52.96%), Query Frame = 1
Query: 1345 RELLWSVLKQLGVPLNMLAVIHQSHDGTRVGV--DDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEF-RDERVMATWPRTGGR*Q---RRGRTLNNRTC----GRTVW---------------------------------MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQK-KHVYHGGEICKDGSIEDEINHLLPAQQPGNARPSGG-------GLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
R+LLW VL + GVP ML VI H+G R V DDG S+WFDVGQ LRQGC LAPL FNLFFAAMLMVA EF +D +V A + G + + ++GR+ +T +W ++VSEPKTE MCML +G+E FT++AAG ++Q + VY G I DG + EI R S +LK+RLLQAE VETLLYGC +W L + KL H FL RCIGW+KR R+DRP S
Sbjct: 687 RDLLWDVLGRFGVPPKMLVVIGHFHEGMRARVRPDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTADMVKIGTQVEYTGKKGRSARRKTTVVTDAEALWAMLYADDAAIVSRSPESLEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEESPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLS 973
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5KKB2_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB2_9PHAE) HSP 1 Score: 191 bits (484), Expect = 2.810e-48 Identity = 120/287 (41.81%), Postives = 151/287 (52.61%), Query Frame = 1
Query: 1345 RELLWSVLKQLGVPLNMLAVIHQSHDG--TRVGVDDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEF-RDERVMATWPRTGGR*Q---RRGRTLNNR----TCGRTVW---------------------------------MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQK-KHVYHGGEICKDGSIEDEINHLLPAQQPGNARPSGG-------GLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
R+LLW VL + GVP MLAVI H+G RV DDG S+WFDVGQ LRQGC LAPL FNLF AAM MVA EF +D +V A + R + +RGR+ + T +W ++VSEPKTE MCML +G+ F ++AAG ++Q + VY G IC DG ++ EI + R S +LK+RLLQAE V+TLLYGC +W L + KL H FL RCIGW+KR R+DRP S
Sbjct: 229 RDLLWDVLGRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFSAAMRMVAVTEFDKDPKVTADMIKIATRVECTGKRGRSAGKKAMMVTVAEALWDMLYADDAAIVSLTPESLEKMMSIIVRVAGLFGLMVSEPKTEIMCMLPKGLGERPFAVSAAGQTYKQTDRFVYLGRTICADGKVDREITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLS 515
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5L020_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L020_9PHAE) HSP 1 Score: 190 bits (483), Expect = 1.170e-47 Identity = 119/287 (41.46%), Postives = 153/287 (53.31%), Query Frame = 1
Query: 1345 RELLWSVLKQLGVPLNMLAVIHQSHDGTRVGV--DDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEF-RDERVMATWPRTGGR*Q---RRGRTLNNRTC----GRTVW---------------------------------MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQK-KHVYHGGEICKDGSIEDEINHLLPAQQPGNARPSGG-------GLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
R+LLW VL++ GVP MLAVI H+G R V + G S+WFDV Q LRQGC LAPL FNLFFAA+LMVA EF +D +V A + G + + ++GR+ +T +W ++VSEPKTE MCML +G+E FT++AAG ++Q + VY G I DG ++ EI R S +LK+RLLQAE VETLLYGC +W L + KL H FL RCIGW+KR R+DRP S
Sbjct: 372 RDLLWDVLRRFGVPPKMLAVIRHFHEGMRAHVRPNGGQYSEWFDVSQGLRQGCNLAPLLFNLFFAAILMVAVAEFDKDPKVTADMVKIGTQVEYTGKKGRSAGRKTTVVTDAEALWAMLYADDAAIVSRSPESLEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEEHPFTVSAAGQTYKQTDRFVYLGRTISADGKVDREITSRTCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLS 658 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig138.5.1 >prot_P-littoralis_Contig138.5.1 ID=prot_P-littoralis_Contig138.5.1|Name=mRNA_P-littoralis_Contig138.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQKKHVYHGGEICKDGSIback to top mRNA from alignment at P-littoralis_Contig138:36102..38157- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig138.5.1 ID=mRNA_P-littoralis_Contig138.5.1|Name=mRNA_P-littoralis_Contig138.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2056bp|location=Sequence derived from alignment at P-littoralis_Contig138:36102..38157- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig138:36102..38157- >mRNA_P-littoralis_Contig138.5.1 ID=mRNA_P-littoralis_Contig138.5.1|Name=mRNA_P-littoralis_Contig138.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig138:36102..38157- (Pylaiella littoralis U1_48)back to top |