mRNA_P-littoralis_Contig138.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig138.5.1
Unique NamemRNA_P-littoralis_Contig138.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 3.730e-76
Identity = 142/232 (61.21%), Postives = 160/232 (68.97%), Query Frame = 1
Query: 1393 MLAVIHQSHDGTR--VGVDDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEF-RDERVMATWPRTGGR*QR-RGRTLNNRTCGRTVWMLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQKKH-VYHGGEICKDGSIEDEINHLLPAQQPGNARPS-------GGGLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
            MLA I Q HDG R  V +DDG CSDWFDVGQ LRQGC LAPL FNLF AAMLM AF E  +D  VMA   +   +  + +GR        +++W    +PKTETMCMLA+G+EACSFTI+A GM F+QKK  VY GG+IC+DGSIE EINH +        R S       GG LRLKVRLLQAE VETLLYGCVTW LKP E RKLR+ HHFFLLRCIGW KR R DRP S
Sbjct:    1 MLAAILQFHDGMRACVRMDDGRCSDWFDVGQGLRQGCNLAPLLFNLFIAAMLMAAFAEISKDAEVMADMAKVKRKVTKGKGRNARLVEAVKSIW----KPKTETMCMLAKGMEACSFTIDAVGMVFKQKKDFVYLGGKICQDGSIEGEINHRVQRAHACFRRNSQAMYDRPGGPLRLKVRLLQAEVVETLLYGCVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERKDRPLS 228          
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5JZD4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD4_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 3.430e-50
Identity = 123/287 (42.86%), Postives = 152/287 (52.96%), Query Frame = 1
Query: 1345 RELLWSVLKQLGVPLNMLAVIHQSHDG--TRVGVDDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEF-RDERVMATWPRTGGR*Q---RRGRTLNNRTC----GRTVW---------------------------------MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQK-KHVYHGGEICKDGSIEDEINHLLPAQQPGNARPSGG-------GLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
            R+LLW VL++ GVP  MLAVI   H+G   RV  DDG  S+WFDVGQ LRQGC LAPL FNLFFAAMLMVA  EF +D  V A   + G + +    +GR+   +T        +W                                 ++VSEPKTE MCML +G+E   FT++AAG  ++Q  + VY G  I  DG  + EI            R S           +LK+RLLQAE VETLLYGC +W L  +   KL   H  FL RCIGW+KR R+DRP S
Sbjct:  229 RDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPNVTANMIKIGTQVEYTGNKGRSAGKKTTVVIDAEALWAMLYADDAAIVSRSPESLEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEEHPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTTEHYAKLNETHRQFLTRCIGWSKRKRSDRPLS 515          
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5K8E6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8E6_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 3.800e-50
Identity = 121/287 (42.16%), Postives = 153/287 (53.31%), Query Frame = 1
Query: 1345 RELLWSVLKQLGVPLNMLAVIHQSHDG--TRVGVDDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEF-RDERVMATWPRTGGR*Q---RRGRTLNNRTC----GRTVW---------------------------------MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQK-KHVYHGGEICKDGSIEDEINHLLPAQQPGNARPSGG-------GLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
            R+LLW VL++ GVP  MLAVI   H+G   RV  DDG  S+WFDVGQ LR+GC LAPL FNLFFAAMLMVA  EF +D +V A   + G + +   ++GR+   +T        +W                                 ++VSEP TE MCML +G+E   FT++AAG  + Q  + VY G  I  DG ++ EI            R S           +LK+RLLQAE VETLLYGC +W L  +   KL   H  FL RCIGW+KR R+DRP S
Sbjct:  188 RDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRKGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTADMVKIGTQVEYTGKKGRSERKKTTVVTDAEALWAMLYADEAAIVSRSPESLEKMMSVIVRAAGLFGVMVSEPTTEIMCMLPKGIEERPFTVSAAGQTYNQTDRFVYLGRTISADGKVDREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLS 474          
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5KKG8_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG8_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 5.450e-50
Identity = 120/287 (41.81%), Postives = 152/287 (52.96%), Query Frame = 1
Query: 1345 RELLWSVLKQLGVPLNMLAVIHQSHDG--TRVGVDDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEF-RDERVMATWPRTGGR*Q---RRGRTLNNRTC----GRTVW---------------------------------MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQK-KHVYHGGEICKDGSIEDEINHLLPAQQPGNARPSGG-------GLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
            R+LLW VL++ GVP  MLAVI    +G   RV  DDG  S+WFDVGQ LRQGC LA L FNLFFAA+LMVA  EF +D +V A   + G + +   ++GR+   +T        +W                                 ++VSEPKTE MCML +G+E   FT++AAG  ++Q  + VY G  I  DG  + EI            R S           +LK+RLLQAE VETLLYGC +W L  +   KL   H  FL RCIGW+KR R+DRP S
Sbjct:   28 RDLLWDVLRRFGVPPKMLAVIRHLPEGMRARVRTDDGQHSEWFDVGQGLRQGCNLARLLFNLFFAAVLMVAVAEFDKDRKVTADMVKIGTQVENTGKKGRSAGKKTTVVTDAEALWAMLYADDAAIVSRSPESLEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEERPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLS 314          
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5KKU2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKU2_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 6.980e-50
Identity = 122/287 (42.51%), Postives = 153/287 (53.31%), Query Frame = 1
Query: 1345 RELLWSVLKQLGVPLNMLAVIHQSHDG--TRVGVDDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEF-RDERVMATWPRTGGR*Q---RRGRTLNNRTC----GRTVW---------------------------------MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQK-KHVYHGGEICKDGSIEDEINHLLPAQQPGNARPSGG-------GLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
            R+LLW VL++ GVP  MLAVI   H+G   RV  DDG  S+WFDVGQ LRQGC LAPL FNLFFAAMLMVA  EF +D +V A   + G + +   ++GR+   +T        +W                                 ++VSEPKTE MCML +G+E   FT++AAG  ++Q  + VY G  I  DG  + EI            R S           + K+RLLQAE VETLLYGC +W L  +   KL   H  FL RCIGW+KR R+DRP S
Sbjct:  332 RDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTADMVKIGTQVEYTGKKGRSAGRKTTVVTDAEALWAMLYADDAAIVSRSPESLEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEEHPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQHKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLS 618          
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5K8M1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M1_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.360e-49
Identity = 120/280 (42.86%), Postives = 150/280 (53.57%), Query Frame = 1
Query: 1345 RELLWSVLKQLGVPLNMLAVIHQSHDG--TRVGVDDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEF-RDERVMATWPRTGGR*Q---RRGRTLNNRTC----GRTVW---------------------------------MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQK-KHVYHGGEICKDGSIEDEINHLLPAQQPGNARPSGGGLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
            R+LLW VL++ GVP  MLAVI   H+G   RV  DDG  S+WFDVGQ LRQGC LAPL FNLFFAAMLMVA  EF +D +V A   + G + +   ++GR+   +T        +W                                 ++VSEPKTE MCML +G+E   FT++AAG  ++Q  + VY G  IC DG   D                     +LK+RLLQAE VETLLYGC +W L  +   KL   H  FL RCI W+KR R+DRP S
Sbjct:  463 RDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTADMVKIGTQVEYTGKKGRSAGKKTTVVTDAEALWAMLYADDAAIVSRSPESLEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEERPFTVSAAGQTYKQTDQFVYLGRTICADGRRADR--------------------QLKIRLLQAEEVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCISWSKRKRSDRPLS 722          
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5JD10_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD10_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 4.760e-49
Identity = 122/287 (42.51%), Postives = 149/287 (51.92%), Query Frame = 1
Query: 1345 RELLWSVLKQLGVPLNMLAVIHQSHDG--TRVGVDDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEFRDE--------RVMATWPRTGGR*QRRGRTLNNRTCGRTVW---------------------------------MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQK-KHVYHGGEICKDGSIEDEINHLLPAQQPGNARPSGG-------GLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
            R+LLW VL++ GVP  MLAVI   H+G   RV  DDG  SDWFDVGQ LRQGC LAPL FNLFFAAMLMVA  EF+          +V   +  TG + +  G+     T    +W                                 ++VSEPKTE MCML +G+E   FT++AAG  ++Q  + VY G  I  DG  + EI            R S           +LK+RLLQAE VETLLYGC +W L  +   KL   H  FL RCIGW+KR R+DRP S
Sbjct:  884 RDLLWDVLRRFGVPPTMLAVIRHFHEGMRARVRTDDGQYSDWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFKVTADMVKIWTQVDGVYIHTGNKDRSAGKKTTVVTDAEALWAMLYADDAAIVSRSPESLEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEEHLFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLS 1170          
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5JM98_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM98_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 2.340e-48
Identity = 122/287 (42.51%), Postives = 152/287 (52.96%), Query Frame = 1
Query: 1345 RELLWSVLKQLGVPLNMLAVIHQSHDGTRVGV--DDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEF-RDERVMATWPRTGGR*Q---RRGRTLNNRTC----GRTVW---------------------------------MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQK-KHVYHGGEICKDGSIEDEINHLLPAQQPGNARPSGG-------GLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
            R+LLW VL + GVP  ML VI   H+G R  V  DDG  S+WFDVGQ LRQGC LAPL FNLFFAAMLMVA  EF +D +V A   + G + +   ++GR+   +T        +W                                 ++VSEPKTE MCML +G+E   FT++AAG  ++Q  + VY G  I  DG  + EI            R S           +LK+RLLQAE VETLLYGC +W L  +   KL   H  FL RCIGW+KR R+DRP S
Sbjct:  687 RDLLWDVLGRFGVPPKMLVVIGHFHEGMRARVRPDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTADMVKIGTQVEYTGKKGRSARRKTTVVTDAEALWAMLYADDAAIVSRSPESLEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEESPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLS 973          
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5KKB2_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB2_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 2.810e-48
Identity = 120/287 (41.81%), Postives = 151/287 (52.61%), Query Frame = 1
Query: 1345 RELLWSVLKQLGVPLNMLAVIHQSHDG--TRVGVDDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEF-RDERVMATWPRTGGR*Q---RRGRTLNNR----TCGRTVW---------------------------------MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQK-KHVYHGGEICKDGSIEDEINHLLPAQQPGNARPSGG-------GLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
            R+LLW VL + GVP  MLAVI   H+G   RV  DDG  S+WFDVGQ LRQGC LAPL FNLF AAM MVA  EF +D +V A   +   R +   +RGR+   +    T    +W                                 ++VSEPKTE MCML +G+    F ++AAG  ++Q  + VY G  IC DG ++ EI   +        R S           +LK+RLLQAE V+TLLYGC +W L  +   KL   H  FL RCIGW+KR R+DRP S
Sbjct:  229 RDLLWDVLGRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFSAAMRMVAVTEFDKDPKVTADMIKIATRVECTGKRGRSAGKKAMMVTVAEALWDMLYADDAAIVSLTPESLEKMMSIIVRVAGLFGLMVSEPKTEIMCMLPKGLGERPFAVSAAGQTYKQTDRFVYLGRTICADGKVDREITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLS 515          
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Match: A0A6H5L020_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L020_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.170e-47
Identity = 119/287 (41.46%), Postives = 153/287 (53.31%), Query Frame = 1
Query: 1345 RELLWSVLKQLGVPLNMLAVIHQSHDGTRVGV--DDGTCSDWFDVGQRLRQGCILAPLFFNLFFAAMLMVAFDEF-RDERVMATWPRTGGR*Q---RRGRTLNNRTC----GRTVW---------------------------------MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQK-KHVYHGGEICKDGSIEDEINHLLPAQQPGNARPSGG-------GLRLKVRLLQAEAVETLLYGCVTWRLKPDENRKLRTLHHFFLLRCIGWNKR*RTDRPTS 2052
            R+LLW VL++ GVP  MLAVI   H+G R  V  + G  S+WFDV Q LRQGC LAPL FNLFFAA+LMVA  EF +D +V A   + G + +   ++GR+   +T        +W                                 ++VSEPKTE MCML +G+E   FT++AAG  ++Q  + VY G  I  DG ++ EI            R S           +LK+RLLQAE VETLLYGC +W L  +   KL   H  FL RCIGW+KR R+DRP S
Sbjct:  372 RDLLWDVLRRFGVPPKMLAVIRHFHEGMRAHVRPNGGQYSEWFDVSQGLRQGCNLAPLLFNLFFAAILMVAVAEFDKDPKVTADMVKIGTQVEYTGKKGRSAGRKTTVVTDAEALWAMLYADDAAIVSRSPESLEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEEHPFTVSAAGQTYKQTDRFVYLGRTISADGKVDREITSRTCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLS 658          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig138.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2J8_9PHAE3.730e-7661.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZD4_9PHAE3.430e-5042.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8E6_9PHAE3.800e-5042.16Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKG8_9PHAE5.450e-5041.81Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KKU2_9PHAE6.980e-5042.51Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K8M1_9PHAE1.360e-4942.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JD10_9PHAE4.760e-4942.51Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JM98_9PHAE2.340e-4842.51Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKB2_9PHAE2.810e-4841.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L020_9PHAE1.170e-4741.46Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig138contigP-littoralis_Contig138:36102..38157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2056
Hectar predicted targeting categoryother localisation
Exons1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789636.070255-UTR-P-littoralis_Contig138:36101..361261680789636.070255-UTR-P-littoralis_Contig138:36101..36126Pylaiella littoralis U1_48UTRP-littoralis_Contig138 36102..36126 -
1680789636.0944817-UTR-P-littoralis_Contig138:36495..381571680789636.0944817-UTR-P-littoralis_Contig138:36495..38157Pylaiella littoralis U1_48UTRP-littoralis_Contig138 36496..38157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789636.0829818-CDS-P-littoralis_Contig138:36126..364951680789636.0829818-CDS-P-littoralis_Contig138:36126..36495Pylaiella littoralis U1_48CDSP-littoralis_Contig138 36127..36495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig138.5.1prot_P-littoralis_Contig138.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig138 36127..36495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig138.5.1

>prot_P-littoralis_Contig138.5.1 ID=prot_P-littoralis_Contig138.5.1|Name=mRNA_P-littoralis_Contig138.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
MLVSEPKTETMCMLAQGVEACSFTINAAGMAFRQKKHVYHGGEICKDGSI
EDEINHLLPAQQPGNARPSGGGLRLKVRLLQAEAVETLLYGCVTWRLKPD
ENRKLRTLHHFFLLRCIGWNKR*
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mRNA from alignment at P-littoralis_Contig138:36102..38157-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig138.5.1 ID=mRNA_P-littoralis_Contig138.5.1|Name=mRNA_P-littoralis_Contig138.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2056bp|location=Sequence derived from alignment at P-littoralis_Contig138:36102..38157- (Pylaiella littoralis U1_48)
GGGGGTGTGAGGGGGTGTGGTATCTAAGGCCACCCGGGTGGTGAAGTGCA CTTCGTCCGAGCTCGGCAAGCAGGGGGTGGGTGTGATATCAAGGGGGTGT GATACCATTTCTTGCCAAGATTGTTGCTGGCAGTACAAGTAAAGGGGGTT TTTAACAAGGGAGTGTGACGTCGTACCTTTTTCCCACCGAATTGTCGCCA GTGCCGGTAAAGGGGGGATTATGTGATAACAAGGAGGGAAGAAGTGGTGA TATTCCTCTCAAGAATGAGTAGTAAAATTACTCGCAAAATACACGGTGTG CGATAACCGGTACTACGGCAGTGGTGACGTGTGAAAACAAACCCGTGAGT GCCTGTGGGTGCGGGGCGGTACATGCAACCGGAGTCGGTTGCATGTACAA AAACAAGGTTATCTTACGTCGTTCATCGGAACAGGCATGTAAATATGATA GGTATCGATTTTACTGTACCGGTATTCGAGTTCACCAACTTTTGCGAAGA TGACCCGGCATCTACGGCGGTGGTCCTGCTCTTTCCCCTGGGACTCCGCA GAAACCGACAACGACGAGAAGTGCAACACAATATTATCGGAGGAGCGTCC TCCTAGCATTGCTAGCCTATCCAGATGGGAAATGAAACAAGAAGGACCCC CTCTTGCTGCTGGCGGTACCGACCAGTGCTGTGGGTGCCCTACTTTGCGT TCCGCGCGCCCCTCTTCTTTGTGTGCATGGTCACGTCAAGGATACCGGTA TCACGGGGTTGCGATACCCTGAGGCCTCGTGGTGGAATGTGGCGCAACTT AGGGTGTGTGGTATCTAAATGCGACCCGGGTGATAAATCGGATATCGGGT TTGGATTCAGAAACAATTCTACCGGGGTGTGGTTTCTTTGTACGAGGGGG TAAGAGTGTGGTATCTAAATTGGATGTGGTATATTATGCGACCTGCGGTA CAAGATGCTATTTCGTGCTATCATACAAGGCAGCTGTGACTGGTCAGAAA CTCGAAAGTATACGCGTGTGTTCACGGCATGATGTGCGTACTTGCAGCAT ACCCCCAGATTTAGTTCTCTGATTATCTAATTTTTACGACCGAGAGCAAT TGGAAGGCCTTGTGCGGGTCAGGGATACACGTAATAAACGGCATGCTGGT CGCCTCCCGGCCGGGCGGTTACTGCGGACGAGAGGGTATTCTGCCGGAGT AACAGACCGGTTTCCGACCAAACTGCTCAACGGTTGACGTGGCGTTTGCA GCTTGACGCCTGCACGAGCTTGCGCGAAATAAGTCAACCCCACTGCTGTA CTCCTGTTTCATTGATTTCACGAAAGCCTACGACTCCATCGATACGGGAA CTACTGTGGTCGGTGCTAAAGCAGCTCGGAGTGCCCCTGAACATGCTTGC GGTCATCCACCAATCCCATGACGGCACGCGTGTGGGGGTGGACGACGGAA CGTGCTCCGACTGGTTCGATGTGGGACAGAGACTCCGACAGGGATGCATT CTGGCACCCCTGTTTTTCAACCTTTTCTTTGCTGCGATGCTCATGGTCGC CTTCGACGAGTTCCGCGACGAGAGGGTGATGGCGACTTGGCCAAGGACAG GAGGAAGGTGACAGAGAAGGGGACGAACGCTCAACAATCGCACGTGTGGT CGGACGGTTTGGATGCTGGTGTCGGAACCCAAGACGGAGACCATGTGCAT GCTCGCTCAAGGGGTGGAGGCGTGCTCGTTCACAATCAACGCTGCCGGGA TGGCGTTCAGGCAAAAAAAACACGTGTATCACGGGGGTGAAATCTGCAAG GACGGCAGCATCGAGGATGAGATCAACCACCTGCTTCCGGCACAACAGCC AGGTAATGCACGACCGTCGGGGGGGGGTCTTCGACTCAAAGTACGGCTCC TTCAAGCCGAAGCCGTGGAGACCCTACTCTACGGGTGTGTCACATGGAGA CTGAAGCCAGATGAGAACCGCAAACTCCGGACACTCCACCACTTCTTCCT CCTTCGTTGCATCGGCTGGAATAAGAGGTAGAGGACAGACCGACCCACGT CCTCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig138:36102..38157-

>mRNA_P-littoralis_Contig138.5.1 ID=mRNA_P-littoralis_Contig138.5.1|Name=mRNA_P-littoralis_Contig138.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig138:36102..38157- (Pylaiella littoralis U1_48)
ATGCTGGTGTCGGAACCCAAGACGGAGACCATGTGCATGCTCGCTCAAGG
GGTGGAGGCGTGCTCGTTCACAATCAACGCTGCCGGGATGGCGTTCAGGC
AAAAAAAACACGTGTATCACGGGGGTGAAATCTGCAAGGACGGCAGCATC
GAGGATGAGATCAACCACCTGCTTCCGGCACAACAGCCAGGTAATGCACG
ACCGTCGGGGGGGGGTCTTCGACTCAAAGTACGGCTCCTTCAAGCCGAAG
CCGTGGAGACCCTACTCTACGGGTGTGTCACATGGAGACTGAAGCCAGAT
GAGAACCGCAAACTCCGGACACTCCACCACTTCTTCCTCCTTCGTTGCAT
CGGCTGGAATAAGAGGTAG
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