mRNA_P-littoralis_Contig1378.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1378.12.1
Unique NamemRNA_P-littoralis_Contig1378.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1378.12.1 vs. uniprot
Match: D8LH37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH37_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 9.320e-63
Identity = 98/140 (70.00%), Postives = 115/140 (82.14%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMFLVFRPVLEDRRCMKRQELTDLLDIWGTWEKVLDVLRGLIQARSHLSFAVRAPSYNGLELENLDLLARDVVGFYAKVMGRRGARPTIHSILHVTDTIREHGE 420
            M+Q    LYP GT +LKDIV+NYSSLTGSDKWTLQSIM LVFRPVL  ++ MKRQ++ DL ++WGT  KVL+VL+ L+Q  SHLS+AVRAPS+N  EL  LDLLARDVVGFY+KVMGR G+RPTIHSILH T+ IR HGE
Sbjct:    1 MSQTPSLLYPAGTERLKDIVSNYSSLTGSDKWTLQSIMLLVFRPVLVMKKNMKRQDVNDLREMWGTDGKVLEVLQQLVQVASHLSYAVRAPSHNDRELSQLDLLARDVVGFYSKVMGRTGSRPTIHSILHTTEAIRAHGE 140          
BLAST of mRNA_P-littoralis_Contig1378.12.1 vs. uniprot
Match: A0A6H5J9E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E1_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 1.220e-52
Identity = 95/143 (66.43%), Postives = 113/143 (79.02%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMFLVFRPVLED----RRCMKRQELTDLLDIWGTWEKVLDVLRGLIQARSHLSFAVRAPSYNGLELENLDLLARDVVGFYAKVMGRRGARPTIHSILHVTDTIREHG 417
            +AQ    LYP GT +LKDIV NYSSLTGSDKWTLQSIM LVFRPVL +    ++ MKRQ++ +L D+WGT EKVL+VL+ LI+  SHLS AVRAPS+N LEL  LDLLARDVVG Y+KV+GR G+RPTIHS+LH +  IR HG
Sbjct:  558 VAQNPSLLYPAGTERLKDIVTNYSSLTGSDKWTLQSIMLLVFRPVLANVGAMKKNMKRQDIAELRDVWGTDEKVLEVLQKLIEVASHLSCAVRAPSHNDLELAQLDLLARDVVGVYSKVLGRTGSRPTIHSVLHTSQAIRAHG 700          
BLAST of mRNA_P-littoralis_Contig1378.12.1 vs. uniprot
Match: A0A6H5KXT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT2_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 3.740e-48
Identity = 87/140 (62.14%), Postives = 103/140 (73.57%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMFLVFRPVLEDRRCMKRQELTDLLDIWGTWEKVLDVLRGLIQARSHLSFAVRAPSYNGLELENLDLLARDVVGFYAKVMGRRGARPTIHSILHVTDTIREHGE 420
            MAQ+   LYPPGT +LKDIV NY+SLTGSDKWTLQSIM LVFR VL++   M R E+ DL   WGT+E VL+ LR L++  S LS A+RAPS+   EL  LD LARD VG + K+MGR G+RPTIHSILH  + IR HGE
Sbjct:  115 MAQKPPLLYPPGTEKLKDIVTNYTSLTGSDKWTLQSIMLLVFRMVLQNVPAMTR-EINDLKAEWGTYEDVLEALRELLKRASLLSIALRAPSFTEPELLQLDKLARDAVGAFFKIMGRTGSRPTIHSILHTVEAIRLHGE 253          
BLAST of mRNA_P-littoralis_Contig1378.12.1 vs. uniprot
Match: A0A6H5KLQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ7_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 8.210e-45
Identity = 88/145 (60.69%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMFLVFRPVLED----RRCMKRQELTDLLDIWGTWEKVLDVLRGLIQARSHLSFAVRAPSYNGLELENLDLLARDV--VGFYAKVMGRRGARPTIHSILHVTDTIREHG 417
            MAQ++  LYPPGT++LKDI+ +Y SLTGSDKWTLQSIM LVFR VL+D    RR MK++++      WGT+E VLD LR LIQ  S LSFA+RAPSYN  EL  LD LARD   VG ++++MGR G+RPTIHS+LH  + IR HG
Sbjct:  283 MAQKSSLLYPPGTDKLKDILTDYPSLTGSDKWTLQSIMLLVFRVVLQDIPSMRRNMKKRDMKAFKAEWGTYESVLDALRTLIQMVSLLSFALRAPSYNDKELRQLDNLARDAPGVGAFSQMMGRTGSRPTIHSMLHAVEAIRLHG 427          
BLAST of mRNA_P-littoralis_Contig1378.12.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 1.900e-43
Identity = 85/143 (59.44%), Postives = 104/143 (72.73%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMFLVFRPVLED----RRCMKRQELTDLLDIWGTWEKVLDVLRGLIQARSHLSFAVRAPSYNGLELENLDLLARDVVGFYAKVMGRRGARPTIHSILHVTDTIREHG 417
            MAQ+   LYPPGT ++KDIV NY+SLTGSDKWTLQSIM LVFR VL++    RR M  +E+  L   WGT+E +L+ LR L+   S LSFA+RAPS+   EL  LD LARD V  ++K+MGR G+RPTIHSILH  +TIR HG
Sbjct:  851 MAQKPSLLYPPGTGKIKDIVTNYASLTGSDKWTLQSIMLLVFRMVLQNVPAMRRNMNTREINGLKAEWGTYEGLLEALRELMIRSSLLSFALRAPSFTEPELRQLDKLARDAVEAFSKIMGRTGSRPTIHSILHTVETIRLHG 993          
BLAST of mRNA_P-littoralis_Contig1378.12.1 vs. uniprot
Match: A0A6H5JWD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWD2_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.010e-42
Identity = 77/113 (68.14%), Postives = 89/113 (78.76%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMFLVFRPVLEDRRCMK----RQELTDLLDIWGTWEKVLDVLRGLIQARSHLSFAVRAPSYNGLELENLDLLARDVV 327
            M+Q    LYP GT +LKDIV+NYSSLTGSDKWTLQSIM LVFRPVL+D R MK    RQ++ DL +IWGT  KVL+VL+ L+Q  SHLS+AVRAPS+N  EL  LDLLARDVV
Sbjct:   45 MSQTPSLLYPAGTERLKDIVSNYSSLTGSDKWTLQSIMLLVFRPVLQDVRAMKKNMKRQDINDLREIWGTDGKVLEVLQQLVQVASHLSYAVRAPSHNDRELSQLDLLARDVV 157          
BLAST of mRNA_P-littoralis_Contig1378.12.1 vs. uniprot
Match: D7G2D4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2D4_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 3.250e-38
Identity = 75/113 (66.37%), Postives = 87/113 (76.99%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMFLVFRPVLEDRRCMK----RQELTDLLDIWGTWEKVLDVLRGLIQARSHLSFAVRAPSYNGLELENLDLLARDVV 327
            M+Q    LYP GT +LKD+V+NYSSLTGSDKWTLQSIM LVFRPV +D R MK    RQ + DL +IWGT  KVL+VL+ L+Q  SHLS+AVRAPS+N  EL  LDLLARDVV
Sbjct:  375 MSQTPSLLYPAGTERLKDMVSNYSSLTGSDKWTLQSIMLLVFRPVFQDFRAMKKNMKRQNINDLREIWGTDGKVLEVLQQLVQVASHLSYAVRAPSHNDRELSQLDLLARDVV 487          
BLAST of mRNA_P-littoralis_Contig1378.12.1 vs. uniprot
Match: A0A6H5KBT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT3_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 3.640e-34
Identity = 64/111 (57.66%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMFLVFRPVLED----RRCMKRQELTDLLDIWGTWEKVLDVLRGLIQARSHLSFAVRAPSYNGLELENLDLLARD 321
            MAQ+   LYPPGT +LKD+V NY+SL GSDKWTLQSI+ L+FR VL+D    RR M  +E+ DL+  WGT++KVL+ LR L++  S LSFA+RAPS+   EL  LD LA D
Sbjct:   14 MAQKPSLLYPPGTRKLKDVVTNYASLNGSDKWTLQSIILLIFRMVLQDVSAMRRNMMTREIKDLVTEWGTYDKVLEALRELMKRASLLSFALRAPSFTDPELRQLDKLAHD 124          
BLAST of mRNA_P-littoralis_Contig1378.12.1 vs. uniprot
Match: A0A6H5KDY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDY2_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 3.900e-34
Identity = 66/111 (59.46%), Postives = 83/111 (74.77%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMFLVFRPVLED----RRCMKRQELTDLLDIWGTWEKVLDVLRGLIQARSHLSFAVRAPSYNGLELENLDLLARD 321
            MAQ+   LYPPGT +LKD+V NY+SL GSDKWTLQSI+ L+FR VL+D    RR MK +E+ DL+  WGT++KVL+ LR L++  S LSFA+RAPS+   EL  LD LARD
Sbjct:  144 MAQKPSLLYPPGTRKLKDVVTNYASLNGSDKWTLQSIILLIFRMVLQDVSAMRRNMKTREIKDLVTEWGTYDKVLEALRELMKRASLLSFALRAPSFTDPELRQLDKLARD 254          
BLAST of mRNA_P-littoralis_Contig1378.12.1 vs. uniprot
Match: A0A6H5KU21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU21_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 9.970e-33
Identity = 66/111 (59.46%), Postives = 83/111 (74.77%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMFLVFRPVLED----RRCMKRQELTDLLDIWGTWEKVLDVLRGLIQARSHLSFAVRAPSYNGLELENLDLLARD 321
            MAQ+   LYPPGT +LKD+V NY+SL GSDKWTLQSI+ L+FR VL+D    RR MK +E+ DL+  WGT++KVL+ LR L++  S LSFA+RAPS+   EL  LD LARD
Sbjct:  331 MAQKPSLLYPPGTRKLKDVVTNYASLNGSDKWTLQSIILLIFRMVLQDVSAMRRNMKTREIKDLVTEWGTYDKVLEALRELMKRASLLSFALRAPSFTDPELRQLDKLARD 441          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1378.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH37_ECTSI9.320e-6370.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9E1_9PHAE1.220e-5266.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXT2_9PHAE3.740e-4862.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLQ7_9PHAE8.210e-4560.69Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M0_9PHAE1.900e-4359.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWD2_9PHAE1.010e-4268.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2D4_ECTSI3.250e-3866.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBT3_9PHAE3.640e-3457.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDY2_9PHAE3.900e-3459.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU21_9PHAE9.970e-3359.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1378contigP-littoralis_Contig1378:23204..24469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size420
Hectar predicted targeting categoryother localisation
Exons3
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789635.3653584-CDS-P-littoralis_Contig1378:23203..233471680789635.3653584-CDS-P-littoralis_Contig1378:23203..23347Pylaiella littoralis U1_48CDSP-littoralis_Contig1378 23204..23347 +
1680789635.3804045-CDS-P-littoralis_Contig1378:23798..239781680789635.3804045-CDS-P-littoralis_Contig1378:23798..23978Pylaiella littoralis U1_48CDSP-littoralis_Contig1378 23799..23978 +
1680789635.3895447-CDS-P-littoralis_Contig1378:24373..244691680789635.3895447-CDS-P-littoralis_Contig1378:24373..24469Pylaiella littoralis U1_48CDSP-littoralis_Contig1378 24374..24469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1378.12.1prot_P-littoralis_Contig1378.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1378 23204..24469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1378.12.1

>prot_P-littoralis_Contig1378.12.1 ID=prot_P-littoralis_Contig1378.12.1|Name=mRNA_P-littoralis_Contig1378.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMFLVFRPVLEDRR
CMKRQELTDLLDIWGTWEKVLDVLRGLIQARSHLSFAVRAPSYNGLELEN
LDLLARDVVGFYAKVMGRRGARPTIHSILHVTDTIREHGE
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mRNA from alignment at P-littoralis_Contig1378:23204..24469+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1378.12.1 ID=mRNA_P-littoralis_Contig1378.12.1|Name=mRNA_P-littoralis_Contig1378.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1266bp|location=Sequence derived from alignment at P-littoralis_Contig1378:23204..24469+ (Pylaiella littoralis U1_48)
ATGGCCCAAGAGGCGGGGCAGCTGTACCCACCGGGCACTAACCAGCTCAA GGACATCGTGGCAAACTATTCATCTCTCACCGGTAGTGACAAATGGACGC TACAGTCGATTATGTTCCTAGTCTTCCGGCCGGTCCTGGAAGATGTCGGA TCTATGGTAAGTGTTGACGTGTGTGTCGTATGGGATGACGGGAAAAGTGT GTGCTGAATTCAAACGCCTTCGAATGCCAAAACGTCGCCAGGGAAAATGG ATAACACGCATGATAGCCACGTAATATGGGTCTTATTTTCAGCACAACTC CACTCTGCGCTCGAATGTGGATTTGAAAGGGCCGGAAAAGTCGCCTCTGT AAACATCCAGCCGAAAGCCGCATAACATCGCCACAATTTTGTACATGTTC GAACTCCGCATTTAGCGCACTTTTTTGGCTGCAGAAAGACCGGCCTTAAT GAGCTGCCATGATTGGATGTTGAGCTTCTCATTTTCACTTTTAGTCAAGG GCGTCTCAACCTGAAAACGGGATACATTCGCGATGTGCCTGTGCTGTTTC GCCCTTAACCGTGGCTTCCGTCTTGGGCACGTTGGGGTGTGGCAGAGGCG TTGTATGAAACGGCAGGAACTCACGGACTTGCTGGACATTTGGGGAACAT GGGAGAAGGTGCTCGATGTACTGCGGGGGCTGATTCAGGCAAGATCTCAC CTTTCGTTCGCTGTTCGTGCACCTTCTTACAACGGCCTCGAGTTGGAGAA CCTCGACCTACTCGCTCGGGACGTGGTTCGTACCTCGTTGTCGTAAAAGT GCCGAGCTAACCCTAAATACTTTTCGGCACATCGCGTTGAATGTGCAGGG TAAACGGACCGCCGGCAGTAGCACCACAGCAGTACAATCTCTTTGGCGGA ATGACTAAAGTGCTTGGGGTCGCTTTGGCCGAATGACCATAGTGCTTAGG GTCGCTTTGGCGGCACGACTTAGCTGCTTGGGGTCGGTGATCTCATACCA GTCGGAGATCCTACATTCCCCCGACAATACCTTTTCGAAACTGGCTGTAC GCAAGGCACCGACGTCGGTCGCCATTATAATGTGTGGCCACACTAGTTAG TGGCAAGCGATACATGGCCCAGGCCTGCAAAACACTCATGTAAGCGCCTT GAACTTGTCGGTGCGTTCAGGTAGGGTTCTACGCCAAAGTGATGGGGAGG AGAGGAGCTCGGCCTACGATCCACTCCATTTTGCACGTCACCGACACCAT CAGGGAACACGGTGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1378:23204..24469+

>mRNA_P-littoralis_Contig1378.12.1 ID=mRNA_P-littoralis_Contig1378.12.1|Name=mRNA_P-littoralis_Contig1378.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig1378:23204..24469+ (Pylaiella littoralis U1_48)
ATGGCCCAAGAGGCGGGGCAGCTGTACCCACCGGGCACTAACCAGCTCAA
GGACATCGTGGCAAACTATTCATCTCTCACCGGTAGTGACAAATGGACGC
TACAGTCGATTATGTTCCTAGTCTTCCGGCCGGTCCTGGAAGATAGGCGT
TGTATGAAACGGCAGGAACTCACGGACTTGCTGGACATTTGGGGAACATG
GGAGAAGGTGCTCGATGTACTGCGGGGGCTGATTCAGGCAAGATCTCACC
TTTCGTTCGCTGTTCGTGCACCTTCTTACAACGGCCTCGAGTTGGAGAAC
CTCGACCTACTCGCTCGGGACGTGGTAGGGTTCTACGCCAAAGTGATGGG
GAGGAGAGGAGCTCGGCCTACGATCCACTCCATTTTGCACGTCACCGACA
CCATCAGGGAACACGGTGAG
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