mRNA_P-littoralis_Contig1365.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1365.4.1
Unique NamemRNA_P-littoralis_Contig1365.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: D7G3S0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 6.360e-33
Identity = 58/91 (63.74%), Postives = 68/91 (74.73%), Query Frame = 3
Query:    9 CSIARGNVVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTGPYCAACETDYSPSLSYTC 281
            C IA G +  TCE PLE+T A + G TLETL +  GYWRAT +S  +LACYNADAC GG+TGA+ FC  GY GPYCA CETDYS SL++TC
Sbjct: 1152 CIIADGTITPTCEVPLEHTSADEDGLTLETLKLDEGYWRATTESVIILACYNADACAGGKTGADSFCASGYQGPYCAVCETDYSSSLAHTC 1242          
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.600e-32
Identity = 59/93 (63.44%), Postives = 69/93 (74.19%), Query Frame = 3
Query:    6 GCSIARGNVVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTGPYCAACETDYSPSLSYTCT 284
            G  I RG V   C APLE++ A   GATLETL+I  GYWRATN+SD +LACYNADAC+GGQTG+E FC  GY GPYCA CE  +S SL++ CT
Sbjct:  516 GNDITRGTVTPECAAPLEHSSADAVGATLETLSIDKGYWRATNESDRILACYNADACSGGQTGSESFCASGYMGPYCAVCEPRHSSSLAHNCT 608          
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: A0A6H5J7J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J9_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.600e-32
Identity = 57/97 (58.76%), Postives = 71/97 (73.20%), Query Frame = 3
Query:    9 CSIARGNVVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTGPY-----CAACETDYSPSLSYTCT 284
            C + R +V   CE PLE+T A +PG TLETL+I GGYWRAT++SD +LACYN DAC GGQTGA+ FC  GY GP      C+ CET ++PSL++TCT
Sbjct:  562 CHVTRSSVTPACELPLEHTTAVEPGLTLETLDIHGGYWRATSESDKILACYNTDACTGGQTGADSFCASGYMGPCEEGEDCSVCETGFAPSLAHTCT 658          
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: A0A6H5JWT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT9_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.750e-24
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 3
Query:    9 CSIARGNVVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTGPYCAACETDYSPSLSYTCT 284
            CS+       TC   L+NT + + G +LETL+++ GYWRA+N S  +LACYN +AC GGQTG +  C  GY GPYCA CE+ Y+ SL++TCT
Sbjct:  665 CSVQEAAGRPTCSVALDNTVSEEAGVSLETLSMSRGYWRASNSSLIILACYNPEACLGGQTGVDNSCDNGYQGPYCAVCESGYASSLAHTCT 756          
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.780e-24
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 3
Query:   12 SIARGNVVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTGPYCAACETDYSPSLSYTCT 284
            S+  G+ V  C   L++T +     T+ETL ++ GYWRATNDS NVLACYN DAC GG T    FC  GY GPYC+ C   YS SL++TCT
Sbjct: 1290 SVENGDRVPICVVQLDHTRSEGGDTTIETLELSSGYWRATNDSANVLACYNEDACVGGMTNDPAFCQRGYEGPYCSVCSEGYSMSLAFTCT 1380          
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 5.410e-22
Identity = 47/84 (55.95%), Postives = 54/84 (64.29%), Query Frame = 3
Query:   30 VVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTGPYCAACETDYSPSLSYTC 281
            VV  C   + ++ +     TLETL+I  GYWRATN S  VLACYN DAC GG TGA  +CV GY GPYCA C  DYS  L +TC
Sbjct:  538 VVPLCSDVIPHSRSDGGLVTLETLSIDPGYWRATNSSTEVLACYNVDACVGGITGATEYCVEGYEGPYCAICSDDYSAQLGFTC 621          
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.010e-21
Identity = 45/92 (48.91%), Postives = 56/92 (60.87%), Query Frame = 3
Query:    6 GCSIARGNVVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTGPYCAACETDYSPSLSYTC 281
            GCS     +V  C   LE++ ++    TL+ L I  GYWRAT  S+NVL CYNADAC GG TG+E +C+ GY GPYCA C   Y+  L   C
Sbjct:  490 GCSFEEPQLVPKCSDALEHSNSSGGTVTLDALVIEPGYWRATPSSENVLECYNADACLGGVTGSESYCLEGYEGPYCAVCSGGYTARLGMAC 581          
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 3.540e-21
Identity = 42/92 (45.65%), Postives = 57/92 (61.96%), Query Frame = 3
Query:    6 GCSIARGNVVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTGPYCAACETDYSPSLSYTC 281
            GC  A G++   C   ++++ +     TL+TL+I  G+WRA+  S  VLACY+ADAC GG TGA G+C  GY GPYC  C   Y+  LS+ C
Sbjct: 1023 GCVFAEGSLAPICTEVMDHSTSDGGNVTLQTLSIDRGFWRASTSSTEVLACYHADACLGGVTGASGYCEEGYEGPYCGICSDGYTEQLSFAC 1114          
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 4.840e-21
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 3
Query:    6 GCSIARGNVVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTGPYCAACETDYSPSLSYTC 281
            GC    G +V  C   +E+  +     TLE L+I  GYWRAT  S++VLACY+A+AC GG T   G+C+ GY GPYC+ C   YS  L + C
Sbjct: 1134 GCVFDEGLLVPACTEVMEHATSDGGNITLEALSIDSGYWRATESSEDVLACYHAEACLGGVTATSGYCLEGYEGPYCSVCSNGYSEQLGFVC 1225          
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: A0A6H5JMC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMC1_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.010e-19
Identity = 46/101 (45.54%), Postives = 62/101 (61.39%), Query Frame = 3
Query:    9 CSIARGNVVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTG----------PYCAACETDYSPSLSYTC 281
            C +A  + V TC    ++ ++T  G+T+ETL+I  GYWRAT  S N+LAC+NADAC GG+TGA  +C  GY G          P CA C   ++ SLS+TC
Sbjct:  678 CDVADNSEVPTCTITPDHAQST--GSTVETLSIDRGYWRATPSSRNILACHNADACLGGETGAADYCAEGYEGALKSVSCTREPDCAVCSDGFAESLSFTC 776          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G3S0_ECTSI6.360e-3363.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX12_9PHAE1.600e-3263.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7J9_9PHAE1.600e-3258.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWT9_9PHAE2.750e-2451.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY65_9PHAE2.780e-2452.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHH1_ECTSI5.410e-2255.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2Z8_ECTSI1.010e-2148.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0E9_9PHAE3.540e-2145.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FTI5_ECTSI4.840e-2145.65Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JMC1_9PHAE2.010e-1945.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1365contigP-littoralis_Contig1365:14326..14800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size287
Hectar predicted targeting categorymitochondrion
Exons2
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789631.2110243-CDS-P-littoralis_Contig1365:14327..143811680789631.2110243-CDS-P-littoralis_Contig1365:14327..14381Pylaiella littoralis U1_48CDSP-littoralis_Contig1365 14328..14381 -
1680789631.2225127-CDS-P-littoralis_Contig1365:14569..148001680789631.2225127-CDS-P-littoralis_Contig1365:14569..14800Pylaiella littoralis U1_48CDSP-littoralis_Contig1365 14570..14800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1365.4.1prot_P-littoralis_Contig1365.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1365 14328..14800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1365.4.1

>prot_P-littoralis_Contig1365.4.1 ID=prot_P-littoralis_Contig1365.4.1|Name=mRNA_P-littoralis_Contig1365.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=95bp
VRAVASQGVTLCRHVRRRWRTPRPRNLAPLWKRSTSPAATGAQRTTVTMS
WPATMRMRATGDKRGQKASVCQGTRDHIARRAKPTILHRFLTPAR
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mRNA from alignment at P-littoralis_Contig1365:14326..14800-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1365.4.1 ID=mRNA_P-littoralis_Contig1365.4.1|Name=mRNA_P-littoralis_Contig1365.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=475bp|location=Sequence derived from alignment at P-littoralis_Contig1365:14326..14800- (Pylaiella littoralis U1_48)
GTTCGGGCTGTAGCATCGCAAGGGGTAACGTTGTGTCGACATGTGAGGCG CCGTTGGAGAACACCGAGGCCACGCAACCTGGCGCCACTCTGGAAACGCT CAACATCGCCGGCGGCTACTGGCGCGCAACGAACGACAGTGACAATGTCC TGGCCTGCTACAATGCGGATGCGTGCAACGGGGGACAAACGGGGGCAGAA GGCTTCTGTGTGCCAGGGTACACGGGACCATGTGAGGGAGTTGTTCGAAG TCATGCAGTTGCTTCTACTCTGTTTCTGGGTGGTAGAGGAAGAACCCACT CTCTCGGTTCGTTTCCGTTGAAAGGCGCTCCATACACACGTTTTCCTAGT TTCCTAGGCCCTCACTACAGTACGCTCTTGTTCTCGCGTACATTTTCGCG TGTCTTATGTTCTTTGCAGATTGCGCGGCGTGCGAAACCGACTATTCTCC ATCGCTTTCTTACACCTGCACGCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1365:14326..14800-

>mRNA_P-littoralis_Contig1365.4.1 ID=mRNA_P-littoralis_Contig1365.4.1|Name=mRNA_P-littoralis_Contig1365.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=285bp|location=Sequence derived from alignment at P-littoralis_Contig1365:14326..14800- (Pylaiella littoralis U1_48)
GTTCGGGCTGTAGCATCGCAAGGGGTAACGTTGTGTCGACATGTGAGGCG
CCGTTGGAGAACACCGAGGCCACGCAACCTGGCGCCACTCTGGAAACGCT
CAACATCGCCGGCGGCTACTGGCGCGCAACGAACGACAGTGACAATGTCC
TGGCCTGCTACAATGCGGATGCGTGCAACGGGGGACAAACGGGGGCAGAA
GGCTTCTGTGTGCCAGGGTACACGGGACCATATTGCGCGGCGTGCGAAAC
CGACTATTCTCCATCGCTTTCTTACACCTGCACGC
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