mRNA_P-littoralis_Contig1365.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: D7G3S0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI) HSP 1 Score: 129 bits (325), Expect = 6.360e-33 Identity = 58/91 (63.74%), Postives = 68/91 (74.73%), Query Frame = 3
Query: 9 CSIARGNVVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTGPYCAACETDYSPSLSYTC 281
C IA G + TCE PLE+T A + G TLETL + GYWRAT +S +LACYNADAC GG+TGA+ FC GY GPYCA CETDYS SL++TC
Sbjct: 1152 CIIADGTITPTCEVPLEHTSADEDGLTLETLKLDEGYWRATTESVIILACYNADACAGGKTGADSFCASGYQGPYCAVCETDYSSSLAHTC 1242
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE) HSP 1 Score: 128 bits (322), Expect = 1.600e-32 Identity = 59/93 (63.44%), Postives = 69/93 (74.19%), Query Frame = 3
Query: 6 GCSIARGNVVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTGPYCAACETDYSPSLSYTCT 284
G I RG V C APLE++ A GATLETL+I GYWRATN+SD +LACYNADAC+GGQTG+E FC GY GPYCA CE +S SL++ CT
Sbjct: 516 GNDITRGTVTPECAAPLEHSSADAVGATLETLSIDKGYWRATNESDRILACYNADACSGGQTGSESFCASGYMGPYCAVCEPRHSSSLAHNCT 608
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: A0A6H5J7J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J9_9PHAE) HSP 1 Score: 128 bits (322), Expect = 1.600e-32 Identity = 57/97 (58.76%), Postives = 71/97 (73.20%), Query Frame = 3
Query: 9 CSIARGNVVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTGPY-----CAACETDYSPSLSYTCT 284
C + R +V CE PLE+T A +PG TLETL+I GGYWRAT++SD +LACYN DAC GGQTGA+ FC GY GP C+ CET ++PSL++TCT
Sbjct: 562 CHVTRSSVTPACELPLEHTTAVEPGLTLETLDIHGGYWRATSESDKILACYNTDACTGGQTGADSFCASGYMGPCEEGEDCSVCETGFAPSLAHTCT 658
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: A0A6H5JWT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT9_9PHAE) HSP 1 Score: 105 bits (261), Expect = 2.750e-24 Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 3
Query: 9 CSIARGNVVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTGPYCAACETDYSPSLSYTCT 284
CS+ TC L+NT + + G +LETL+++ GYWRA+N S +LACYN +AC GGQTG + C GY GPYCA CE+ Y+ SL++TCT
Sbjct: 665 CSVQEAAGRPTCSVALDNTVSEEAGVSLETLSMSRGYWRASNSSLIILACYNPEACLGGQTGVDNSCDNGYQGPYCAVCESGYASSLAHTCT 756
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE) HSP 1 Score: 105 bits (261), Expect = 2.780e-24 Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 3
Query: 12 SIARGNVVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTGPYCAACETDYSPSLSYTCT 284
S+ G+ V C L++T + T+ETL ++ GYWRATNDS NVLACYN DAC GG T FC GY GPYC+ C YS SL++TCT
Sbjct: 1290 SVENGDRVPICVVQLDHTRSEGGDTTIETLELSSGYWRATNDSANVLACYNEDACVGGMTNDPAFCQRGYEGPYCSVCSEGYSMSLAFTCT 1380
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 5.410e-22 Identity = 47/84 (55.95%), Postives = 54/84 (64.29%), Query Frame = 3
Query: 30 VVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTGPYCAACETDYSPSLSYTC 281
VV C + ++ + TLETL+I GYWRATN S VLACYN DAC GG TGA +CV GY GPYCA C DYS L +TC
Sbjct: 538 VVPLCSDVIPHSRSDGGLVTLETLSIDPGYWRATNSSTEVLACYNVDACVGGITGATEYCVEGYEGPYCAICSDDYSAQLGFTC 621
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 97.8 bits (242), Expect = 1.010e-21 Identity = 45/92 (48.91%), Postives = 56/92 (60.87%), Query Frame = 3
Query: 6 GCSIARGNVVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTGPYCAACETDYSPSLSYTC 281
GCS +V C LE++ ++ TL+ L I GYWRAT S+NVL CYNADAC GG TG+E +C+ GY GPYCA C Y+ L C
Sbjct: 490 GCSFEEPQLVPKCSDALEHSNSSGGTVTLDALVIEPGYWRATPSSENVLECYNADACLGGVTGSESYCLEGYEGPYCAVCSGGYTARLGMAC 581
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 3.540e-21 Identity = 42/92 (45.65%), Postives = 57/92 (61.96%), Query Frame = 3
Query: 6 GCSIARGNVVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTGPYCAACETDYSPSLSYTC 281
GC A G++ C ++++ + TL+TL+I G+WRA+ S VLACY+ADAC GG TGA G+C GY GPYC C Y+ LS+ C
Sbjct: 1023 GCVFAEGSLAPICTEVMDHSTSDGGNVTLQTLSIDRGFWRASTSSTEVLACYHADACLGGVTGASGYCEEGYEGPYCGICSDGYTEQLSFAC 1114
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 4.840e-21 Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 3
Query: 6 GCSIARGNVVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTGPYCAACETDYSPSLSYTC 281
GC G +V C +E+ + TLE L+I GYWRAT S++VLACY+A+AC GG T G+C+ GY GPYC+ C YS L + C
Sbjct: 1134 GCVFDEGLLVPACTEVMEHATSDGGNITLEALSIDSGYWRATESSEDVLACYHAEACLGGVTATSGYCLEGYEGPYCSVCSNGYSEQLGFVC 1225
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Match: A0A6H5JMC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMC1_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 2.010e-19 Identity = 46/101 (45.54%), Postives = 62/101 (61.39%), Query Frame = 3
Query: 9 CSIARGNVVSTCEAPLENTEATQPGATLETLNIAGGYWRATNDSDNVLACYNADACNGGQTGAEGFCVPGYTG----------PYCAACETDYSPSLSYTC 281
C +A + V TC ++ ++T G+T+ETL+I GYWRAT S N+LAC+NADAC GG+TGA +C GY G P CA C ++ SLS+TC
Sbjct: 678 CDVADNSEVPTCTITPDHAQST--GSTVETLSIDRGYWRATPSSRNILACHNADACLGGETGAADYCAEGYEGALKSVSCTREPDCAVCSDGFAESLSFTC 776 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1365.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1365.4.1 >prot_P-littoralis_Contig1365.4.1 ID=prot_P-littoralis_Contig1365.4.1|Name=mRNA_P-littoralis_Contig1365.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=95bp VRAVASQGVTLCRHVRRRWRTPRPRNLAPLWKRSTSPAATGAQRTTVTMSback to top mRNA from alignment at P-littoralis_Contig1365:14326..14800- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1365.4.1 ID=mRNA_P-littoralis_Contig1365.4.1|Name=mRNA_P-littoralis_Contig1365.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=475bp|location=Sequence derived from alignment at P-littoralis_Contig1365:14326..14800- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1365:14326..14800- >mRNA_P-littoralis_Contig1365.4.1 ID=mRNA_P-littoralis_Contig1365.4.1|Name=mRNA_P-littoralis_Contig1365.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=285bp|location=Sequence derived from alignment at P-littoralis_Contig1365:14326..14800- (Pylaiella littoralis U1_48)back to top |