mRNA_P-littoralis_Contig136.77.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig136.77.3
Unique NamemRNA_P-littoralis_Contig136.77.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig136.77.3 vs. uniprot
Match: A0A6H5JJ43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ43_9PHAE)

HSP 1 Score: 384 bits (987), Expect = 3.740e-118
Identity = 312/760 (41.05%), Postives = 373/760 (49.08%), Query Frame = 3
Query:  177 DNNAFVIRLLRVFLGAAVRDXXXXXXXXPDLPSHHSSSRTSCGRRVQCAPSSLPATAA-APTTVASEQAEKVQPA--------QNIAKCEESPGPTAQQGATKGKTDIAAAAAEASATVDAREQAGCTLWDMSADERHASAMCSAGLVAVSCAVLGYCAGAAATAQLRALAVAKEEPDGSAVTKLPVILVTAAEPVEAPKAPDTALSAPSGGQEVERLREIACGLLANACSHRSLRQQIAGDPPLGEELLLAFHCTDDSASLTELLRLFSTAALM---------------------------------------------------------------------------------PTAG-----------------------------------------GLSSGLAAKDTLERLAFILENSLEEKLLARACSLAYSLMYKHGDAVIRPLVEAFRLEESLAALLNFRSTDLAYEKLGGKETGFDVLLRCLEVLSTSEYSCIGPSPPAAVALPPAVKNXXXXXXXXXXXXXXXXXXEVKGGCASALQYVENHXXXXXXXXXRTRKKTGAGEEDNLIDPAKGNDRTTAVVE-GVTTTKTQ-AMSKSDKRGSVIRGMVAALVPWEHSRQTQRAALLVLGNVLDNCLDGGPDAPSEGVKDGKYADRSASESCAEDLDKALVTSATGGQGEWANEEXXXXXXXXEVVGVDRLAKRRREFLQSVNNLVSGGDSTAAAAVADEGDGLGEELHEAVEAVRKVLEIAG 2057
            D  A +IRLLR+FLGAAV D           PS   S+          AP  LPAT+  AP    S    K  P         +N  K    P     Q   + +TD+A+         DAREQAGC LWDMSADE +A AMCSAGLVAVSCAVL  CA    +A + A A A+     S+ +  PV    AA  V AP  PD         ++VERLRE+ CGLLAN  SHRSLRQQIAGD  LG+ELL AFH TDD A LTELLRLFSTAAL+                                                                                 P AG                                         GL+SG+AA++TLERLAF L+NSLEE+LLA ACSL YSLMY+HGDAVIRPL+E F LEESL +LL  RS DLAYEKLGG ETGFD LLRCLEVL+TSE S +GP    A A PP V +                          AL               + RK+    EE     P  G     A  E    T+KT+ ++S+ + RG VIRG+V+AL PWEHSR +QRAALLVLGN+L+N ++   DA + G        R ASESCA +LD+ L   A GG GEWA ++            V R+ K RREF++SV+NLV   D   AA   +E DGLGE+L EAVEA+RK+LE +G
Sbjct:    7 DEKASIIRLLRIFLGAAVGDEDHENTPLSAPPSLPDSTS---------APP-LPATSPKAPPRAESPLTGKPDPCLPGGDRLERNSPKLLGQPRKP--QRTAESETDMAS-------VPDAREQAGCALWDMSADEGNAFAMCSAGLVAVSCAVLRQCA----SAIVSAAAEARAGGLSSSKSLAPVEAKEAAMAV-APPLPDRE-------EQVERLREVTCGLLANVFSHRSLRQQIAGDLALGQELLGAFHSTDDPACLTELLRLFSTAALIKSTESAYATKAMNEDNGDAQVAGSTNDPVGDGRAATTALPETNLSGDIHGEGQTAAGALRMVAGAAGAAEAALGAVEISSKPAAGENRTAVTLVTRERNEAEATAVPASEPNTAGAALAMAAWGSAGLASGIAAEETLERLAFFLQNSLEERLLAWACSLTYSLMYRHGDAVIRPLIEVFGLEESLCSLLQSRSGDLAYEKLGGTETGFDALLRCLEVLTTSEVSGVGPPSSPAAAEPPVVVDPP------------------------ALAQDSGELSPKQQLNEQPRKRRNLAEESTEEGPTNGGGDCEAACEVQPETSKTRPSLSRGEMRGRVIRGLVSALTPWEHSRHSQRAALLVLGNILENAIE--EDAGAVGGVKSPEGARRASESCAVELDRGLAALAAGGTGEWAEDDERDP-----AAAVRRVGKSRREFVESVHNLVHSDDPVTAA---NEEDGLGEDLLEAVEAIRKILEESG 701          
BLAST of mRNA_P-littoralis_Contig136.77.3 vs. uniprot
Match: D7FSE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSE1_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 4.390e-110
Identity = 326/784 (41.58%), Postives = 388/784 (49.49%), Query Frame = 3
Query:  105 VDNAVDDAGGGTLPIYERSLLGEGD---NNAFVIRLLRVFLGAAVRDXXXXXXXXPDLPSHHSSSRTSCGRRVQCAPSSLPATAAAPTTVA----------SEQAEKVQPAQNIAKC--EESPG----PTAQQGATKGKTDIAAAAAEASATVDAREQAGCTLWDMSADERHASAMCSAGLVAVSCAVLGYCAGAAATAQLRALAVAKEEPDGSAVTKLPVILVTAAEPVEAPKAPDTALSAPSGGQEVERLREIACGLLANACSHRSLRQQIAGDPPLGEELLLAFHCTDDSASLTELLRLFSTAALM-----------------------------------------------------------------------PTAG-----------------------------------------GLSSGLAAKDTLERLAFILENSLEEKLLARACSLAYSLMYKHGDAVIRPLVEAFRLEESLAALLNFRSTDLAYEKLGGKETGFDVLLRCLEVLSTSEYSCIGPSPPAAVALPPAVKNXXXXXXXXXXXXXXXXXXEVKGGCASALQYVENHXXXXXXXXXRTRKKTGAGEEDNLIDPAKGNDRTTAVVE-GVTTTKTQ-AMSKSDKRGSVIRGMVAALVPWEHSRQTQRAALLVLGNVLDNCLDGGPDAPSEGVKDGKYADRSASESCAEDLDKALVTSATGGQGEWANEEXXXXXXXXEVVGVDRLAKRRREFLQSVNNLVSGGDSTAAAAVADEGDGLGEELHEAVEAVRKVLEIAG 2057
            +D   +D GG        +L  EGD    NA +IRLLR+FLGAAV D           PS               AP SLP + +AP   A          S    K  P  +   C    SP     P   Q   + +TD+A+         DAREQAGC LWDMSA+ER+ASAMCSAGLVAVSCAVL  CA A  +A   A A        S+ + +P     AA  V  P  P          ++VERLRE+ CGLLAN  SHR LRQQIAGD  LG+ELL AFH TDD A LTELLRLFSTAALM                                                                       P  G                                         GL+SG+AA +TLERLAF L NSLEE+LLA ACSL YSLMY+HGDAVIRPL+E F LE+SL +LL  RS DLAYEKLGG ETGFD LLRCLEVL+TS+ S +GP                      XXXXXXXXXX                XXXXXXXXX  RK     EE     P  G +   AV E    T+KT+ ++ + + RG VIRG+V+AL PWEHSR++Q+AALLVLGN+L+N ++   DA + G        RSASESCA +LD+ L   A GG GEWA +             V+R+ K RREF++SV  LV   D   +A   +E DGLGE+L EAVEAVRK+LE +G
Sbjct:    1 MDVMHEDGGG--------NLYNEGDPSDENASIIRLLRIFLGAAVGDQDDDNTP----PS---------------APPSLPDSTSAPPLPAXXXXXXXLGQSPLTGKPDPCLSGGDCLGRNSPKLLGQPPKLQRTAESETDMAS-------VPDAREQAGCALWDMSAEERNASAMCSAGLVAVSCAVLRQCANAIVSAAAEARAGGLS----SSKSLMPAEAKEAAMAVAPPLPPR---------EQVERLREVTCGLLANVFSHRGLRQQIAGDLALGQELLGAFHSTDDPACLTELLRLFSTAALMKSTESAYDAHAAGSTNDPVGDGRAATTVSPEPNRSGEIHGEGHTGAGALRMVAGAAGAAEAASGPVELSSEPAVGDNRTAVTSAARERNEAEATAVSASAPNTEGAALAIAARGSAGLASGIAAGETLERLAFFLGNSLEERLLAWACSLTYSLMYRHGDAVIRPLIEVFGLEKSLCSLLQSRSGDLAYEKLGGTETGFDALLRCLEVLTTSKVSGVGPP---------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRK---LAEEGTAEGPTNGGENCEAVCEVQPETSKTRPSLGRGEMRGRVIRGLVSALTPWEHSRRSQKAALLVLGNILENAIE--EDAGAVGGVKSTEGARSASESCAVELDRGLAALAAGGAGEWAEDGERDP-----AAAVERVGKNRREFVESVQKLVHSDDPVTSA---NEEDGLGEDLLEAVEAVRKILEESG 703          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig136.77.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJ43_9PHAE3.740e-11841.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSE1_ECTSI4.390e-11041.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig136contigP-littoralis_Contig136:433357..443341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4155.Migut.D02321.1.p
Model size2645
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.39e-06
EggNOG OGs28JS7@1|root,2QTWY@2759|Eukaryota,37NGC@33090|Viridiplantae,3G96B@35493|Streptophyta,44G1I@71274|asterids
Cds size1986
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig136.77.3prot_P-littoralis_Contig136.77.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig136 433452..442777 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789630.5676308-UTR-P-littoralis_Contig136:433356..4334511680789630.5676308-UTR-P-littoralis_Contig136:433356..433451Pylaiella littoralis U1_48UTRP-littoralis_Contig136 433357..433451 +
1680789630.6398976-UTR-P-littoralis_Contig136:442777..4433411680789630.6398976-UTR-P-littoralis_Contig136:442777..443341Pylaiella littoralis U1_48UTRP-littoralis_Contig136 442778..443341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789630.5776637-CDS-P-littoralis_Contig136:433451..4335231680789630.5776637-CDS-P-littoralis_Contig136:433451..433523Pylaiella littoralis U1_48CDSP-littoralis_Contig136 433452..433523 +
1680789630.5886443-CDS-P-littoralis_Contig136:439662..4403511680789630.5886443-CDS-P-littoralis_Contig136:439662..440351Pylaiella littoralis U1_48CDSP-littoralis_Contig136 439663..440351 +
1680789630.6006296-CDS-P-littoralis_Contig136:440720..4409401680789630.6006296-CDS-P-littoralis_Contig136:440720..440940Pylaiella littoralis U1_48CDSP-littoralis_Contig136 440721..440940 +
1680789630.6089282-CDS-P-littoralis_Contig136:441187..4413221680789630.6089282-CDS-P-littoralis_Contig136:441187..441322Pylaiella littoralis U1_48CDSP-littoralis_Contig136 441188..441322 +
1680789630.6174662-CDS-P-littoralis_Contig136:441511..4421971680789630.6174662-CDS-P-littoralis_Contig136:441511..442197Pylaiella littoralis U1_48CDSP-littoralis_Contig136 441512..442197 +
1680789630.6267564-CDS-P-littoralis_Contig136:442593..4427771680789630.6267564-CDS-P-littoralis_Contig136:442593..442777Pylaiella littoralis U1_48CDSP-littoralis_Contig136 442594..442777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig136.77.3

>prot_P-littoralis_Contig136.77.3 ID=prot_P-littoralis_Contig136.77.3|Name=mRNA_P-littoralis_Contig136.77.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=662bp
MNAVDNAVDDAGGGTLPIYERSLLGEGDNNAFVIRLLRVFLGAAVRDDDD
DGGTTPDLPSHHSSSRTSCGRRVQCAPSSLPATAAAPTTVASEQAEKVQP
AQNIAKCEESPGPTAQQGATKGKTDIAAAAAEASATVDAREQAGCTLWDM
SADERHASAMCSAGLVAVSCAVLGYCAGAAATAQLRALAVAKEEPDGSAV
TKLPVILVTAAEPVEAPKAPDTALSAPSGGQEVERLREIACGLLANACSH
RSLRQQIAGDPPLGEELLLAFHCTDDSASLTELLRLFSTAALMPTAGGLS
SGLAAKDTLERLAFILENSLEEKLLARACSLAYSLMYKHGDAVIRPLVEA
FRLEESLAALLNFRSTDLAYEKLGGKETGFDVLLRCLEVLSTSEYSCIGP
SPPAAVALPPAVKNSPAVEETSTVGAETTAAAEVKGGCASALQYVENHHQ
QQQQQQLRTRKKTGAGEEDNLIDPAKGNDRTTAVVEGVTTTKTQAMSKSD
KRGSVIRGMVAALVPWEHSRQTQRAALLVLGNVLDNCLDGGPDAPSEGVK
DGKYADRSASESCAEDLDKALVTSATGGQGEWANEEEQEQEQEEEVVGVD
RLAKRRREFLQSVNNLVSGGDSTAAAAVADEGDGLGEELHEAVEAVRKVL
EIAGKLKNNQL*
back to top

mRNA from alignment at P-littoralis_Contig136:433357..443341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig136.77.3 ID=mRNA_P-littoralis_Contig136.77.3|Name=mRNA_P-littoralis_Contig136.77.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=9985bp|location=Sequence derived from alignment at P-littoralis_Contig136:433357..443341+ (Pylaiella littoralis U1_48)
ATGGGGGGTCATGTACCATAGACCACAACACACAATCCAGATCAGCCTTT TCTCGTGCTCCTTCGTCTGTCGGCGGCTTCAAGTAGTGTCGAAGAATGAA TGCGGTAGATAATGCAGTGGATGATGCAGGAGGCGGAACCCTCCCCATCT ACGAACGAAGTCTGCTGGTGAGACCGCAACACGCCCAAACAAACAGCATA GATGCAGACAGAAGTGCCGCCGCAATCGACTGCTTTCAAAGTCCACCTCA TCTGATATTATCTGCAATGCATGTCGTGCTGCGTATTGAATTTTGAAACA AATGTTCCGTGTTGTTTTGACCCGCATCTTTGTACACTGCCGCGGGGTAC TTCTTGCGATGATCTTTGACCAGGCAGGCGTACATATACCAGATGAGCTG GAAGGTGATGAGCGACTACGTATGCTTTTGATTGCACGGTACGAAACATT TTTCCAAAGAGGTGTGTCGCGGGACTGTCAGCTTCGTCCTGACGCCGAGG TAACCGAAATACTGCTGTACCAAAACGCCAAAAAACAGCGCTGGTCAAGG GCATCGCTGGGCGAAGAGTTGTGGCGGTCAGAACGTTGCATGCACGGGAC CACAGTACCCAAATCTGTCCTACGTTCTTGCCTAGATTCTTTTTTTATTG AGAAGCAGTCCACGAGCCCAGCGAAGTGAAACTTCGTTGTCGAATTGCTT CGAATTCATACCTACTTAATGTGCAGGTGTTAGAGTGTTCGAATACTAGT GGGTCGGGGGTGAAAATATTTAGGGCTGCTTCTCAAGTAAATGCGTTATC CTTTGAACCCCCCAACCCCGATTGGGGACAATTTGGGGACACCTGCTTTT TTTTTGTGACTTGGGTTTTGAAGGCGCCTTTCTACAGGTATTTTGGGTGT GGTTCCGTGAGCTCGATGGAATGTGTGTGGATCGACCAATCGTTGGCTGC CTCCGTGCGCGCGCCCGACCGTTATAGGTTTGTTGTGTGTTCTTGTGTCT TCCCTCTACAGCGTAGACACAACTAACTGCGATCGTCTTGTATCACACAC CATGCCGGCACCCCTCCCTGCCTTGCACACATGCACACAAACATAATACA TGATACATATGTTAGACTATACCGCTGCGATGAAACGCTGATTGACGATG ACGTACGGCTGCTGCACTTAGAACAGATGCTGCAGCAGCTGATTGATGTG TCGTGCGATTGGTTGGTGAGACACACACCGCGCGCACGCGGGCCGACACT ACAAACAGACACATCGTGCCACGCACGTTTGAAAGCTCACAAGCATACCC GACGATCTCGTACGAGTATCATCACATACTACATACATGGGTACCATCAC ATGCCGACACCCTTGCGTTGATCATGCAACATATATATGTTTGTTTGTCA TGGGACTGCTGTATCGTAGGGAAGATGCTGCTGATAAGGATGATGATGGT GATGCTGTAGACCCTGCCTGAGTGACTGTCGTGCGCGGGTATAACCTTGC GGAGTGGAACCCTACTGCTGTGTGGTTGTCGAGCGGGGTACCCTGATCTG CCATGCTAAGTGGCGGTGTTGCTGCTTGCGTGCTACTTGCACACAGCAGT ATCCCTTTGTTTGAAGCAACATACATCCTGCAAAACTAAACAAACAACTT TTGTGTAGGTGACCCTCCCAAAAACGTTTGGTGTAGCTTTAGACTGGAAT CTGTCCCCATTTTTTTCAGGGCAAATTGGGGACAGATTTCTGTGTATAAC CAAGTCACACCCTTTTCTCACCGGACAGAGCCAGCGAGACGTCAGTCCCT TTTTTTTAATGAGACTGTCCACCATTCGCCAATCATCGGCGCACCGAAAT CAGTTAATTTTTGGCTCCGTGATTATTTTTTCAGACCCCTGGGGGATGAA AGGGTTATGCCGTGTGCGTTGCTGTCAAGTCTCGTGGCTCGATTATCCCT TGGTAACATACAGCAGAACAGCTGGTGGTGTTCCGCCAGCACAACGAACA CAAAACGCCTCTCATAATTTTTCATAAAAAAGCGACACCGATAATTACGC GCCTTCGACAACATAGCTGTGCGCATATGACACGGGCTGCGGTGAACCCA GCAGCAATGGGTGAATGATATTTACCTCGTCAGTTGAAGCCCTTGGTCGT AACGATCTGCGCTAAGCTGGTACCTTGAGGTTGCAGAATATGGACCATAT CTCGGACGGACACACAGACCGACATTGACACCATCAACCTCGAATATTAT ATAAAGGCACCCCTGTCTCATTTTTATTTTATTTTATTGAGAAGCAGTCC ATGAGCGCAGCAGAGTGTAACTTCTGTGTCGAACCGCTTCGAATTCATTC CGACTTGATCGTGATGTGTATGTGCGAATAAAAAAAAGAATGAGACAGGG GTGCCTTTATTTAGTTTGCGAGGTTTATGGTGTCTGTGTGTCCGCCCGAG ATGATGCCCACATTTTGCGACACTTTGACACCAGTTCAGCACAGATCGTT ACGACCAAGGGCTTCAACTGATGAGGTAAACAGCATCTACCCACTGCTGC TGGCTTTATCCCGGCCTGTGTCCTGTGCGCACAGCTATGTTGTCGAAGGC GCGCAAATATTGGCGTCCCTTTTCTTGTGCAAAATGATGACATGTTGTTC GTTGTGCTGGTGGAACCCAGAGTGGCTATACACAACTCTACATATGGAAC CGCACGCGGATTAACGAAGGGATTTGAGAAGCGGCCCTCCAACGCACACT GCTTCTCAACTCTTATCCACTAGTATTTAGAAGCAGTCCACGAGCGCACC GGAGTGTAACTTCGGTGTCGAACGGCTTCGAATTCATACCGACTTGGTCG TGATGTCCACGTGTGAGTGTATGTGCGAGTACCAAAAACAAAATGAGTCA GGGGTGCCATTTTTCGAGGTTTATGATATCTTGTGTGTCTGTGTGTCTGT CCGAGATAATGTCCATATTTTGCAACACTTGGGCACCAGTGCAGCACATA TCGTTAGGCCCTGTATTAACGATAGTGGGAAAATCATTATTGGAATAAAT CATTATCATAGAAGGTCGCTGATCGGCCAAGCTTTTATTACCTTCCGACG ACGCCAATGATTTTCCGAAAAACCCTTCGAGGCCAAAGAAGTCCAAAAAT ACTTCATTGGAAGAAAATCATTAATCATTATTGGAGAAGGCTTTTTCTGA ACGATGTGCCTCGCGCACGAGGCTGGCCAGACCAAATACTACCGAGGCAA CCAACAGCAGTGCCACAGAACATAGCATAGAGGTTTGCCGTGGCACCAGG CAAGCCAACGTTAGTACCACACATGACAGCGCAACAAACAAATACACCAG TTAGTTTGCATGATTGATGATGACGACCCACATTTCATTTTGCACAACAC ACCATCAGCACACACGACGCAGACAGGCAGGTCACAGGTCACGAGCACGA AGTTGCCTCTCACAGCCCATGGCAGACAGACACATGACACAGTAGCATTC TTGAGTGCACGAGCCAACACACATACACACACCGCACACAGCTACAAACG GGGTGTCTGTCAGCATCAAGGCTTGGTGCACAGAGCCCACGACCTTGCCT TGCATGCGAGAGAGGAGGCACATGATGCGTCCAAGTACTGCTGCACTGCT GTACGGAGTACTTTGTACAGCAGTAGATTTTATTGTTCTGTTTTACCCGT CGTGTCGTCATCATCAGAGGTTTAGCTCTTTCGTTAATATGGCTCGAAGG GTTTTTCGGAAAATCATACTATGATAATGATTTCAATAGTGATTTTCCGA CTTCCGTTAACACAGGGCCTTACGACCAAAGGGCTTCAACTGATGAGGTA GGGCTTCAACTGATGAGGTAAAAAATACCTACTAATGGCTGCTGGTTTCA CCGCAGCCCCTCTCCTGTGCGCACAGCCATGTTGTCGGAGGCGCGCAGTA ATCGGTGTCCTCTTTTGGTGCAAAATGATGCGAGACGTTTTGTTTTGTGA TGGCGGAACACCAGCAGCTGTTCTTTTGCTGTAGATTTTGTAGCAAGGGT ATATACGCCGCTGGCGCTCTTCACACCAATTCCCCGCCGACAGCGTGCAC ATCTTCCTATGATATGCATGCACCGTGGGTGTGACATGGGGACTTCCTGC GCTGCAACGGCAGCTTTCATTGGGTAAACTCTGCTGGCCGTTCTTCTCCT TGTTCCATCGGGAGCCATTTTTCCCTTCGTTGTGTGTCAACACCCCAGTA GTATGTGAGGTGGCTTTCGTAGTGCGTCAACATCCAGTAGTATGTGATGT GGGATAGAAGTGAGTGAGTGCTGAAGGATGTTCACGAAGCCCAGAGTGGC TACAAATCGAACCACAAAACTCAACAGCAACGCACCCGGCTCAACGCAGT TATTTGAGAAGCGGCCCTCCAACGCACACTGCTTATCAACCCCAATCCAC TTGTAAGGTCACGCTGGGTTCAGTACAAAAAGAAAGCGGAAGAAAAAACG AACGACGTTTTTGCTAGAGTAATTATCACTGAAATATAGGATCGGGGATT TGCATAATGCAGCTTTCTTTCCAGGGGACGAAAAAGTCAACAGGGTATCA TCTTTTTTTGGAACATACTGCGCGGTAGAATGATTTTTTCAAACTCCGCC AACCCAAAAACCTCCGGATGTTTTTACTGCTTGTGCCAGCCCGGTAAGCC AGCTACATTTGCGTCGAGTCCGTCTGTAAATCGGGAATGTACGCGTTGAG AACGGCAGTTTCGCATTATCGCACCCCGCAGATGTTCAAGTGCGATGCAA TTTCGGGCCGCTGCATGCATCTAGATACTAAATCAAAAGTTCCGAAGAAT ACCTCTAGAATCGTTTCTGGCTGCCCGTTGCTGCTGCCAAGGCATTGGAC GCCTCTCACCCACCATATCTATGGGCTGTGGCACTTTCGAGCAGTGTGGT TGCTTGTGGCGAGCTTGCGCTATCGTGAACTGAAGCACAGTTTTCTGGGC TTTTTCACCAATTTCTTCTCGAGAAGATGTTGCTCAAAACGTTAATTTTG ATCGTCTCGATCTCGCGCTACAAGGCCTAGACTGGCATGCGGCACAGTTT TGATCCACTCAAGATCACAAGCTAAGGTGCTTCTCCACAGAGATAAGGAG GATTCTACCTCCGAACGCAAGCAGAGGAGGGGATGGGATGTGGAGTTTAC AGCAGTAAGGGGGGGCACGGCGAAGGATTTTTTATCTGTAAGTTGAAAGA AAAAATGATGCCGTTGGAGCAAAAATGCAACAAGGGAACCCGGGATACCG GGACGCGTCTTCCCCTTTCTTTTTGTACTGAACCCGGCGTAGCGTTAAGA ATCCACTGACAAGGGCGGTAAAACCCTCGGGGAAAATCTCATTGCGGGCC CTAAGGGTAAATTTCATTATTTTATCAAGTCAAACCAACTGATTCTCATA CGGCTCGAAGGGCTGTTGTGCGAACTCAATAATATCACGTACGTTTATCA GTAGAGGATACTGTAGAGCAGCTATGTGTGTGTTGGCACGTCCAGGCATG CTGCTGGAGCTGAGATATCGAAGCCTGCAGCAATGGCTCAAAACGTCCGC AAACTGCGGCCGAACTGGACCGACACCAAAGGTTTGTCACTTCTTTGCTT GCCGCCACGGACCCCAACCGCCTGAACTGCAGGCCATCCGAGGTAGCTGT GGTACTGCAGTAGACCCGCAGCTCAGGAGGTTGGGGCTTGTGGCGGCAAG TACCGCAGTGGCAAGCCTCTGTTGTCGGTCCAGTTCGGCCGTAGTTTGCG GACTTTCTGAGCCACTGCTGCAGCCTTCGACATCTCAGCTCCAGCAGCAT GTCTGAACGTGCCGAGACACACATAGCTGCTCCAAGGTGTCCTCTACTGA TAAACGTACGTGGTGTAATTGAGTTCGCACAATAGCTCCTTTTTGAGCCT TATCAAATGAAGCTATTTTGACTTGATTTTAGTACGGAAAGAACATATCT TGATGTTTTTGAGGGAGATTGGAGGTAGAGATGTGTGATATGCATGTGAA GAGAGGCCCCTACCGCCGCTGCGTGCGATAACCAACAGTGTGTATCTTTC CCGACGCCTCCCTACTGGTCTAAGGTACCCAGTGTATGATTATCAGGGCC CCTTCGCTGTTTTTCCAAATCCGTGCCTCTCAACAATCTATCGTCCCTGC ATGCTTAATGTCCGAAATAAGTCTCGGTGATCTGTGATGTAGGGAGACCT GAATCTTGTCTCGGAGATCTGTAGATGATGACCCGCTCACCCCGCGTTCC GCCCAGGGTGAGGGCGACAACAACGCCTTCGTGATCCGACTGCTTCGTGT CTTCCTCGGTGCGGCGGTTCGAGATGACGACGACGACGGTGGTACAACTC CGGATCTGCCCTCCCATCACAGCAGTAGCAGGACCAGTTGCGGTAGGAGA GTGCAGTGTGCACCGTCCTCATTGCCAGCAACGGCAGCAGCACCAACAAC AGTAGCTTCTGAGCAGGCGGAAAAGGTACAGCCGGCCCAAAACATAGCAA AGTGCGAAGAATCGCCGGGGCCAACGGCGCAGCAGGGTGCAACCAAAGGG AAAACAGATATCGCAGCAGCAGCAGCAGAAGCATCAGCAACAGTGGATGC CCGCGAACAGGCTGGCTGCACGTTGTGGGACATGTCGGCGGACGAGCGAC ACGCCTCTGCCATGTGCTCAGCGGGTCTGGTCGCCGTTTCGTGTGCCGTC CTCGGCTACTGCGCCGGCGCCGCCGCGACAGCGCAACTTAGAGCTCTGGC CGTAGCTAAGGAAGAGCCCGATGGGTCGGCGGTAACGAAGCTGCCCGTGA TCCTCGTGACAGCTGCTGAGCCGGTGGAAGCGCCGAAAGCACCGGATACA GCACTCAGCGCACCGTCCGGTGGACAGGAGGTGGAAAGACTGCGTGAAAT AGCGTGTGGGCTGTTAGCCAACGCCTGTTCCCACCGATCCCTTCGGTGAG AAACAGACCAGAGATGTCTTATGTTTGTTGGGCCCAAGTAGAGATTACAA TACACCACAACGCGTTCGCCTGCTGTCGTGTTTGTAACACAACCAGACAG CTTAAAATACCTATGCAAGTATTTTCGTTCCAAGTCAACGACATTCTCGT CGTTCTTGATCATGATGCGAGAACAACAAACAGCACACATCCGCTTTCCC CATATCGTTTTTTTTTTTTGGTGTGCCCAGGCTCTGCGCGATTGTAGGCT GTTCCATGTTGGATGCATGGGCTGATTATTGCTCGAACTTTAGCATCAGC AATAGCAACACCACCCACGCTGAAATACTGATTTGCATTCGATTCCGCCA CCAAACGTCTTCAGGCAGCAGATCGCAGGAGACCCTCCCCTAGGAGAGGA ACTTCTCCTGGCGTTTCACTGCACCGACGATTCTGCTTCCCTCACAGAAT TGCTTCGTTTGTTTTCTACTGCTGCGCTGATGCCCACGGCGGGAGGGCTG TCTTCGGGGCTAGCGGCGAAGGATACCCTGGAGAGATTAGCTTTTATTCT CGAAAACTCATTGGAGGAGAAGCTCTTAGCGCGGGTAAGCGGTTGCGTAC CCTCAGAAATCATGTTTCGAGTTGTTCGCCGTGACACGACCCTGAAACTC CTAGACTTGCACATCGTACTGCACGACTATTTTTTGCCCCACCAACGGAC GTTCCATCCATGTGGCGCTTGGGAGTTGTCCGTAGAATGTGATCTTAGCC CGCCCCCTTCTTCTTGCCTCGCCTTGTCGGGACGTCGACACCCCCCTACC CGCCCACGCACACACCCGCGTTCCCAAACAGGCGTGCTCGCTGGCATACT CATTAATGTACAAGCACGGCGATGCTGTGATCCGTCCCCTGGTTGAGGCG TTCCGGTTAGAGGAATCGCTGGCCGCCCTCCTCAACTTCCGCAGCACGGA TCTTGCGTATGAGAAGGTATGGCGGCCGCTGTTGGTATTAATGTGGTGGT CATGTGAGTATGGTCACGTCGTATTCCCTCTATAAACCCCGATAACGAGC CGCAACAGGTAGTACAATCGAAGCAAATCGCGTCGCTATGTCGACGGCCT CCTCGCTACCCCCCCGCCCCCTCACCGGACATCGCGAAAACAAATTGAGG CATAGCTGGGGGGCAAGGAGACCGGGTTCGACGTCCTCCTACGGTGCCTC GAAGTTCTCTCCACAAGCGAATATTCTTGTATCGGCCCTTCCCCGCCTGC CGCCGTAGCCTTGCCACCGGCGGTAAAAAACTCGCCTGCTGTTGAGGAAA CCTCCACCGTTGGAGCGGAAACAACGGCAGCGGCGGAGGTAAAGGGAGGG TGCGCGAGCGCATTGCAATATGTAGAGAATCATCATCAGCAGCAGCAGCA ACAACAGCTGCGAACGAGGAAGAAGACCGGGGCAGGGGAGGAAGATAATT TGATTGACCCGGCGAAAGGAAACGACAGGACGACCGCCGTCGTTGAAGGC GTGACAACGACGAAAACGCAAGCTATGAGTAAAAGCGACAAACGGGGAAG CGTGATCAGAGGGATGGTCGCGGCGCTGGTGCCATGGGAGCACTCGCGCC AGACCCAGAGAGCGGCATTGCTGGTGCTCGGGAACGTTCTCGATAATTGT CTCGACGGAGGCCCTGATGCCCCTTCCGAAGGCGTGAAAGATGGAAAGTA CGCTGATAGGAGCGCGTCGGAGTCTTGCGCTGAGGACTTGGATAAGGCAC TGGTGACGTCAGCTACGGGAGGGCAGGGAGAGTGGGCGAATGAGGAGGAG CAGGAGCAGGAGCAGGAGGAGGAGGTTGTCGGTGTTGATAGGTGAGTCGT TTGTGACTGGTAAGCCTTGTTGTCTCCTAATACACCTCCTATTGCGAGCA TAAACCATGTTTGCCACCCTCGACCCTCGGCGAGCCCGGCGCAAAAACTC GCCTCCTAATAATGGTGCTGTTGCTGCTGCCTGGGTGTCTGGAGCCTCGG GGTATACAGTACCTCCGTGCCCCCACCCTCGTCGTAGTAAACGCCCGTCG CCATTGTTGTTGTCCCAATAACAAGTGTGGGAGACTGCGAGAGAAAGAGA GAAATATACAGAGCGAGAGAGACCACCAATCGTGAGGTTTTGTGGTACGT AGGATGCTAGACTTCAGTCAAGCAGCCCAGTGTCACGTTTGTCACATCAT TGTGCTTGGCTATCTGTTGAATGCGCATGACTTTTAGGTTGGCGAAGAGA AGGCGCGAGTTTCTGCAATCTGTCAACAACTTGGTCAGCGGCGGTGATTC GACAGCGGCCGCAGCGGTGGCAGACGAGGGGGACGGGCTGGGAGAGGAGC TTCATGAGGCTGTAGAGGCCGTCCGAAAAGTTCTAGAAATTGCAGGAAAA TTAAAAAATAACCAGTTATAAAAGGAATTTTTACGCCATCGGCTGATGCT TTTTTCGTTGGGTTTTTGTTCAGTGCGAACGCCTGAAGCAGGTCCCCTGA TCCCGGCGCCAACACTGAGACCTTTGGCTGCGTTAGCTATAGTAAGTGGG ACCTCGTGGTTCGTCTAAAACCAGGTCGGGGGCGGAGGTGAACGGGCGAA GCCAACAGAGGTTTGGAACGCTAACAACAGAGTCACCGTAGGGCGCAGCA TGGGTTACGCGGCGATATCTCTACCGGCTGCTCGGAGGTCGAGATCTTCA CGCGTTTACCTCTGGACCTTTGGCAAGATGACTTATCTAGCAAAGTGAAA CTTATGTATGAATTCAGCTGGCCATCATGGCGCATTCGTTATGTTTGTGT AGCTGTCCTCTTTAGACGCAGAAGGATAACTTCCATGGTGCGTGGCTTAA CGCAGTTGATGTCAAGGCTGGCTTCGACGGGCTCGACATGCTTGTGATCT TTTACGGCCGTACACGCTAGCGCAAAAATTCTCAAAGAGAACCTGAGGTT CTCTAGAGTATCTGTGGACCAACATTCAAAATACC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig136:433357..443341+

>mRNA_P-littoralis_Contig136.77.3 ID=mRNA_P-littoralis_Contig136.77.3|Name=mRNA_P-littoralis_Contig136.77.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1986bp|location=Sequence derived from alignment at P-littoralis_Contig136:433357..443341+ (Pylaiella littoralis U1_48)
ATGAATGCGGTAGATAATGCAGTGGATGATGCAGGAGGCGGAACCCTCCC
CATCTACGAACGAAGTCTGCTGGGTGAGGGCGACAACAACGCCTTCGTGA
TCCGACTGCTTCGTGTCTTCCTCGGTGCGGCGGTTCGAGATGACGACGAC
GACGGTGGTACAACTCCGGATCTGCCCTCCCATCACAGCAGTAGCAGGAC
CAGTTGCGGTAGGAGAGTGCAGTGTGCACCGTCCTCATTGCCAGCAACGG
CAGCAGCACCAACAACAGTAGCTTCTGAGCAGGCGGAAAAGGTACAGCCG
GCCCAAAACATAGCAAAGTGCGAAGAATCGCCGGGGCCAACGGCGCAGCA
GGGTGCAACCAAAGGGAAAACAGATATCGCAGCAGCAGCAGCAGAAGCAT
CAGCAACAGTGGATGCCCGCGAACAGGCTGGCTGCACGTTGTGGGACATG
TCGGCGGACGAGCGACACGCCTCTGCCATGTGCTCAGCGGGTCTGGTCGC
CGTTTCGTGTGCCGTCCTCGGCTACTGCGCCGGCGCCGCCGCGACAGCGC
AACTTAGAGCTCTGGCCGTAGCTAAGGAAGAGCCCGATGGGTCGGCGGTA
ACGAAGCTGCCCGTGATCCTCGTGACAGCTGCTGAGCCGGTGGAAGCGCC
GAAAGCACCGGATACAGCACTCAGCGCACCGTCCGGTGGACAGGAGGTGG
AAAGACTGCGTGAAATAGCGTGTGGGCTGTTAGCCAACGCCTGTTCCCAC
CGATCCCTTCGGCAGCAGATCGCAGGAGACCCTCCCCTAGGAGAGGAACT
TCTCCTGGCGTTTCACTGCACCGACGATTCTGCTTCCCTCACAGAATTGC
TTCGTTTGTTTTCTACTGCTGCGCTGATGCCCACGGCGGGAGGGCTGTCT
TCGGGGCTAGCGGCGAAGGATACCCTGGAGAGATTAGCTTTTATTCTCGA
AAACTCATTGGAGGAGAAGCTCTTAGCGCGGGCGTGCTCGCTGGCATACT
CATTAATGTACAAGCACGGCGATGCTGTGATCCGTCCCCTGGTTGAGGCG
TTCCGGTTAGAGGAATCGCTGGCCGCCCTCCTCAACTTCCGCAGCACGGA
TCTTGCGTATGAGAAGCTGGGGGGCAAGGAGACCGGGTTCGACGTCCTCC
TACGGTGCCTCGAAGTTCTCTCCACAAGCGAATATTCTTGTATCGGCCCT
TCCCCGCCTGCCGCCGTAGCCTTGCCACCGGCGGTAAAAAACTCGCCTGC
TGTTGAGGAAACCTCCACCGTTGGAGCGGAAACAACGGCAGCGGCGGAGG
TAAAGGGAGGGTGCGCGAGCGCATTGCAATATGTAGAGAATCATCATCAG
CAGCAGCAGCAACAACAGCTGCGAACGAGGAAGAAGACCGGGGCAGGGGA
GGAAGATAATTTGATTGACCCGGCGAAAGGAAACGACAGGACGACCGCCG
TCGTTGAAGGCGTGACAACGACGAAAACGCAAGCTATGAGTAAAAGCGAC
AAACGGGGAAGCGTGATCAGAGGGATGGTCGCGGCGCTGGTGCCATGGGA
GCACTCGCGCCAGACCCAGAGAGCGGCATTGCTGGTGCTCGGGAACGTTC
TCGATAATTGTCTCGACGGAGGCCCTGATGCCCCTTCCGAAGGCGTGAAA
GATGGAAAGTACGCTGATAGGAGCGCGTCGGAGTCTTGCGCTGAGGACTT
GGATAAGGCACTGGTGACGTCAGCTACGGGAGGGCAGGGAGAGTGGGCGA
ATGAGGAGGAGCAGGAGCAGGAGCAGGAGGAGGAGGTTGTCGGTGTTGAT
AGGTTGGCGAAGAGAAGGCGCGAGTTTCTGCAATCTGTCAACAACTTGGT
CAGCGGCGGTGATTCGACAGCGGCCGCAGCGGTGGCAGACGAGGGGGACG
GGCTGGGAGAGGAGCTTCATGAGGCTGTAGAGGCCGTCCGAAAAGTTCTA
GAAATTGCAGGAAAATTAAAAAATAACCAGTTATAA
back to top