mRNA_P-littoralis_Contig1351.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1351.1.1
Unique NamemRNA_P-littoralis_Contig1351.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1351.1.1 vs. uniprot
Match: A0A1E3GXS9_9HYPH (Uncharacterized protein n=2 Tax=Methylobrevis pamukkalensis TaxID=1439726 RepID=A0A1E3GXS9_9HYPH)

HSP 1 Score: 68.6 bits (166), Expect = 1.050e-11
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 3
Query:  192 FGADPERYVPAYGGHCALAAAEGMAVSAQPDIFVTMGSRVFLFRSPAARYAFLLEAETLITRADSLWPDVVRTLS 416
            F A P  YVPAYGGH A+AAA G  V   P+ F    +R+FLF S   R  +L +A  LI  AD+ WP ++ +L+
Sbjct:   98 FAAAPAVYVPAYGGHSAVAAAAGFPVPGAPEFFAIRDNRLFLFSSAQQRDQWLKDAARLIAEADARWPVIIESLA 172          
BLAST of mRNA_P-littoralis_Contig1351.1.1 vs. uniprot
Match: A0A833GH96_9HYPH (Uncharacterized protein n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GH96_9HYPH)

HSP 1 Score: 67.0 bits (162), Expect = 2.370e-11
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 3
Query:  192 FGADPERYVPAYGGHCALAAAEGMAVSAQPDIFVTMGSRVFLFRSPAARYAFLLEAETLITRADSLWPDVVRTLSP 419
            F A PE Y+P +GG+     A G+A    P +++    R++LF S AAR  F  +A+ ++ RA+S WP+V+RTL P
Sbjct:   72 FAAGPEIYMPQFGGYDPTGIARGVATPGHPQLWLIHDRRLYLFYSDAARNDFAADADAILARAESRWPEVLRTLVP 147          
BLAST of mRNA_P-littoralis_Contig1351.1.1 vs. uniprot
Match: A0A257HGU3_9HYPH (YHS domain-containing protein n=1 Tax=Rhizobiales bacterium PAR1 TaxID=2015577 RepID=A0A257HGU3_9HYPH)

HSP 1 Score: 67.0 bits (162), Expect = 5.050e-11
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 3
Query:  192 FGADPERYVPAYGGHCALAAAEGMAVSAQPDIFVTMGSRVFLFRSPAARYAFLLEAETLITRADSLWPDVVRTLSP 419
            F ++P  Y+PA+GGH  +A A G  ++  P+ F   G RV+LFR P +R AFL + E + T A+S WP V R L P
Sbjct:  112 FLSNPTNYLPAFGGHDPVAIAAGFVLAGSPEFFAIAGQRVYLFRHPESRDAFLQDPE-IGTTAESQWPQVKRHLVP 186          
BLAST of mRNA_P-littoralis_Contig1351.1.1 vs. uniprot
Match: A0A363TEI4_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TEI4_9BRAD)

HSP 1 Score: 63.5 bits (153), Expect = 6.920e-10
Identity = 28/76 (36.84%), Postives = 46/76 (60.53%), Query Frame = 3
Query:  192 FGADPERYVPAYGGHCALAAAEGMAVSAQPDIFVTMGSRVFLFRSPAARYAFLLEAETLITRADSLWPDVVRTLSP 419
            F ADP+ Y+P +GG+  +  A G+A    PD++V  G+R++LF +   R +F      +I  A+  WPD++R L+P
Sbjct:   88 FAADPDIYMPRFGGYDPVGVARGVATPGHPDLWVRAGNRLYLFHTAEDRDSFAKNPAPMIGAAEVRWPDLLRVLAP 163          
BLAST of mRNA_P-littoralis_Contig1351.1.1 vs. uniprot
Match: A0A346A4A2_9HYPH (Uncharacterized protein n=2 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A4A2_9HYPH)

HSP 1 Score: 62.0 bits (149), Expect = 1.670e-9
Identity = 30/72 (41.67%), Postives = 43/72 (59.72%), Query Frame = 3
Query:  192 FGADPERYVPAYGGHCALAAAEGMAVSAQPDIFVTMGSRVFLFRSPAARYAFLLEAETLITRADSLWPDVVR 407
            F A+PE Y+P +GG+  +A   G AV   P I+   G R++LF S A R AF+ +A+ ++  A   WPDV R
Sbjct:   64 FVANPEVYMPQFGGYDPVAIERGRAVPGHPLIWTVTGDRLYLFYSDADRAAFIADADRIVAAATRKWPDVAR 135          
BLAST of mRNA_P-littoralis_Contig1351.1.1 vs. uniprot
Match: UPI001647BED0 (YHS domain protein n=1 Tax=Bosea sp. CS1GBMeth4 TaxID=1892849 RepID=UPI001647BED0)

HSP 1 Score: 62.4 bits (150), Expect = 1.800e-9
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 3
Query:  189 LFGADPERYVPAYGGHCALAAAEGMAVSAQPDIFVTMGSRVFLFRSPAARYAFLLEAETLITRADSLWP 395
            LF ADP+RY+PAYGG CA   + G  V  +P+ +  +G R+FL      + ++L   +T I RAD+ WP
Sbjct:   84 LFEADPQRYLPAYGGFCAYGTSRGYLVKIEPEAWSIVGGRLFLNYDLGVKDSWLRRTKTYIARADAGWP 152          
BLAST of mRNA_P-littoralis_Contig1351.1.1 vs. uniprot
Match: A0A1D7U1S9_9HYPH (Uncharacterized protein n=2 Tax=Bosea TaxID=85413 RepID=A0A1D7U1S9_9HYPH)

HSP 1 Score: 62.0 bits (149), Expect = 2.430e-9
Identity = 28/71 (39.44%), Postives = 42/71 (59.15%), Query Frame = 3
Query:  189 LFGADPERYVPAYGGHCALAAAEGMAVSAQPDIFVTMGSRVFLFRSPAARYAFLLEAETLITRADSLWPDV 401
            LF ADP+RY+PAYGG CA   + G  V  +P+ +  +  R++L      R  +L + +T I RAD+ WP +
Sbjct:   82 LFEADPQRYLPAYGGFCAYGTSRGYLVKIEPEAWSIVNGRLYLNYDLGVRKTWLAKTQTYIARADANWPKL 152          
BLAST of mRNA_P-littoralis_Contig1351.1.1 vs. uniprot
Match: UPI0008D9CBE1 (YHS domain-containing protein n=1 Tax=Halofilum ochraceum TaxID=1611323 RepID=UPI0008D9CBE1)

HSP 1 Score: 60.8 bits (146), Expect = 5.530e-9
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 3
Query:  192 FGADPERYVPAYGGHCALAAAEGMAVSAQPDIFVTMGSRVFLFRSPAARYAFLLEAETLITRADSLWPDV 401
            F ADPERY PAYGGHCA A AEG   +  P+ +   G R++L  +   +  +  + +  I  A+  WP+V
Sbjct:   77 FRADPERYAPAYGGHCAYAVAEGYTAAGDPEHWTIHGGRLYLNYNAEVQTRWEADRDDYIAAANDNWPEV 146          
BLAST of mRNA_P-littoralis_Contig1351.1.1 vs. uniprot
Match: A0A1E3C7B7_9GAMM (Twin-arginine translocation pathway signal protein n=5 Tax=Marinobacter TaxID=2742 RepID=A0A1E3C7B7_9GAMM)

HSP 1 Score: 60.1 bits (144), Expect = 1.070e-8
Identity = 27/71 (38.03%), Postives = 42/71 (59.15%), Query Frame = 3
Query:  192 FGADPERYVPAYGGHCALAAAEGMAVSAQPDIFVTMGSRVFLFRSPAARYAFLLEAETLITRADSLWPDVV 404
            F A+PERY+P YGG+CA A A+G      P+ +     R++L  + + +Y +L   E  I +AD+ WP V+
Sbjct:   76 FEANPERYLPVYGGYCAWAVAQGYLAKGDPEHWAIRDGRLYLNYNQSVQYRWLKNTEGFIRQADANWPKVL 146          
BLAST of mRNA_P-littoralis_Contig1351.1.1 vs. uniprot
Match: UPI00123C56F2 (hypothetical protein n=1 Tax=Rhabdaerophilum calidifontis TaxID=2604328 RepID=UPI00123C56F2)

HSP 1 Score: 60.1 bits (144), Expect = 1.460e-8
Identity = 30/76 (39.47%), Postives = 45/76 (59.21%), Query Frame = 3
Query:  192 FGADPERYVPAYGGHCALAAAEGMAVSAQPDIFVTMGSRVFLFRSPAARYAFLLEAETLITRADSLWPDVVRTLSP 419
            F A+P+ Y+P +GG+   A A G AV+  P++F+ +  R++LFR P +R AFL +       A + WP V R L P
Sbjct:   90 FLAEPQSYLPVFGGYDPAAIAAGFAVAGSPELFLILDERIYLFRKPESREAFLRDPAIREAAARN-WPQVKRDLVP 164          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1351.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E3GXS9_9HYPH1.050e-1145.33Uncharacterized protein n=2 Tax=Methylobrevis pamu... [more]
A0A833GH96_9HYPH2.370e-1140.79Uncharacterized protein n=1 Tax=Pseudorhodoplanes ... [more]
A0A257HGU3_9HYPH5.050e-1144.74YHS domain-containing protein n=1 Tax=Rhizobiales ... [more]
A0A363TEI4_9BRAD6.920e-1036.84Uncharacterized protein n=1 Tax=Bradyrhizobiaceae ... [more]
A0A346A4A2_9HYPH1.670e-941.67Uncharacterized protein n=2 Tax=Pseudolabrys taiwa... [more]
UPI001647BED01.800e-942.03YHS domain protein n=1 Tax=Bosea sp. CS1GBMeth4 Ta... [more]
A0A1D7U1S9_9HYPH2.430e-939.44Uncharacterized protein n=2 Tax=Bosea TaxID=85413 ... [more]
UPI0008D9CBE15.530e-940.00YHS domain-containing protein n=1 Tax=Halofilum oc... [more]
A0A1E3C7B7_9GAMM1.070e-838.03Twin-arginine translocation pathway signal protein... [more]
UPI00123C56F21.460e-839.47hypothetical protein n=1 Tax=Rhabdaerophilum calid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1351contigP-littoralis_Contig1351:316..737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog118161.KB235922_gene4499
Model size422
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.27e-11
EggNOG OGsCOG3350@1|root,COG3350@2|Bacteria,1GNSC@1117|Cyanobacteria,3VMZB@52604|Pleurocapsales
Descriptionmonooxygenase activity
Cds size291
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789624.2100952-CDS-P-littoralis_Contig1351:315..6061680789624.2100952-CDS-P-littoralis_Contig1351:315..606Pylaiella littoralis U1_48CDSP-littoralis_Contig1351 316..606 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789624.219694-UTR-P-littoralis_Contig1351:606..7371680789624.219694-UTR-P-littoralis_Contig1351:606..737Pylaiella littoralis U1_48UTRP-littoralis_Contig1351 607..737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1351.1.1prot_P-littoralis_Contig1351.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1351 316..606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1351.1.1

>prot_P-littoralis_Contig1351.1.1 ID=prot_P-littoralis_Contig1351.1.1|Name=mRNA_P-littoralis_Contig1351.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=97bp
MSCCIRDLSGALPIGNETCLFGADPERYVPAYGGHCALAAAEGMAVSAQP
DIFVTMGSRVFLFRSPAARYAFLLEAETLITRADSLWPDVVRTLSP*
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mRNA from alignment at P-littoralis_Contig1351:316..737-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1351.1.1 ID=mRNA_P-littoralis_Contig1351.1.1|Name=mRNA_P-littoralis_Contig1351.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=422bp|location=Sequence derived from alignment at P-littoralis_Contig1351:316..737- (Pylaiella littoralis U1_48)
AGCATTGCCAGCGCACCGGTTTTCGCCAATGAACGCATTCTTTCCAATCC AAGCTTTCAACTGGCTCTGCATGGTTATGATGCTGTTGCCTATAGCGCTG ACGGCGCTGCAAGGAGTGGGACAGGAGAGCCATGAGTTGTTGTATCAGGG ACTTGTCTGGCGCTTTGCCAATCGGCAATGAAACTTGCCTTTTCGGCGCA GACCCGGAACGCTATGTTCCTGCCTATGGCGGTCATTGTGCGCTGGCTGC CGCCGAAGGCATGGCTGTGTCCGCCCAGCCGGATATTTTCGTCACCATGG GCAGCCGCGTGTTTCTGTTCCGCTCGCCAGCTGCGCGCTACGCTTTTCTG CTGGAAGCTGAGACGCTGATCACACGGGCGGACTCACTATGGCCAGATGT TGTTCGCACCTTATCACCCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1351:316..737-

>mRNA_P-littoralis_Contig1351.1.1 ID=mRNA_P-littoralis_Contig1351.1.1|Name=mRNA_P-littoralis_Contig1351.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig1351:316..737- (Pylaiella littoralis U1_48)
ATGAGTTGTTGTATCAGGGACTTGTCTGGCGCTTTGCCAATCGGCAATGA
AACTTGCCTTTTCGGCGCAGACCCGGAACGCTATGTTCCTGCCTATGGCG
GTCATTGTGCGCTGGCTGCCGCCGAAGGCATGGCTGTGTCCGCCCAGCCG
GATATTTTCGTCACCATGGGCAGCCGCGTGTTTCTGTTCCGCTCGCCAGC
TGCGCGCTACGCTTTTCTGCTGGAAGCTGAGACGCTGATCACACGGGCGG
ACTCACTATGGCCAGATGTTGTTCGCACCTTATCACCCTAA
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