prot_P-littoralis_Contig1346.2.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1346.2.1
Unique Nameprot_P-littoralis_Contig1346.2.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length115
Homology
BLAST of mRNA_P-littoralis_Contig1346.2.1 vs. uniprot
Match: A0A7S6PUZ9_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Pedospumella sp. Jangsampo120217C5 TaxID=2782409 RepID=A0A7S6PUZ9_9STRA)

HSP 1 Score: 137 bits (344), Expect = 4.030e-35
Identity = 84/141 (59.57%), Postives = 90/141 (63.83%), Query Frame = 0
Query:    1 MTEEGTFIINGYERIVISQIIRSPGLYFRKELITPRKTIYTATLISDKGLWTNL------------------------------ESKEKKEDLDQDKIFFTIYWIIIKYHQRNIRQY---KASLLFEAQQLTQESKKAANF 108
            MTEEGTFIINGYERIVISQIIRSPGLYFRKEL+TPRKT+YTATLISDKGLWT                                ESKEKKED DQDKIF  IY ++  Y   +   Y   K  LLFEAQQLTQESKK+  F
Sbjct:  141 MTEEGTFIINGYERIVISQIIRSPGLYFRKELVTPRKTVYTATLISDKGLWTKFILDEKINKQTKRFEKDRIYLKLNEFKAHSPESKEKKEDSDQDKIF--IYDLLHYYKISSKEIYDNLKHPLLFEAQQLTQESKKSGEF 279          
BLAST of mRNA_P-littoralis_Contig1346.2.1 vs. uniprot
Match: A0A0D3MK66_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Ochromonas sp. CCMP1393 TaxID=420556 RepID=A0A0D3MK66_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.060e-23
Identity = 63/135 (46.67%), Postives = 81/135 (60.00%), Query Frame = 0
Query:    1 MTEEGTFIINGYERIVISQIIRSPGLYFRKELITPRKTIYTATLISDKGLWT------------------------------NLESKEKKEDLDQDKIFFTIYWIIIKYHQRNIRQYKASLLF----EAQQLTQE 101
            MTEEGTFIING ER++ISQIIRSPG+YFRKE  T RK IYTAT+IS+KGLWT                              ++ESKEKKE+ D DK+F    + +I+Y   N+++   SL +    + QQLT+E
Sbjct:  149 MTEEGTFIINGCERVIISQIIRSPGVYFRKEFGTTRKVIYTATVISNKGLWTKFVLDEKTNRETKKVDRDRIYIKLNDFKIKSIESKEKKEESDDDKLFI---YDLIRYFGLNLQEVYDSLKYPLHLDNQQLTRE 280          
BLAST of mRNA_P-littoralis_Contig1346.2.1 vs. uniprot
Match: A0A3G2QZU6_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Neotessella volvocina TaxID=2419522 RepID=A0A3G2QZU6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 9.590e-20
Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 0
Query:    1 MTEEGTFIINGYERIVISQIIRSPGLYFRKELITPRKTIYTATLISDKGLWTNLESKEKKEDLDQDKIFFTI 72
            MTEEGTF+ING ERIVISQIIRSPG+YFRKE    RKT+YTAT+IS+KGLWT     +   ++D D+IF  +
Sbjct:  128 MTEEGTFVINGCERIVISQIIRSPGIYFRKEYGLNRKTLYTATVISNKGLWTKF-ILDSHPEIDMDRIFLKL 198          
BLAST of mRNA_P-littoralis_Contig1346.2.1 vs. uniprot
Match: A0A3G2QZV3_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Mallomonas splendens TaxID=52552 RepID=A0A3G2QZV3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.150e-18
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    1 MTEEGTFIINGYERIVISQIIRSPGLYFRKELITPRKTIYTATLISDKGLWTNLESKEKK 60
            MTEEGTF+I+G ERIVISQIIRSPG+YFRKE  T RK IYTAT+IS+KGLWT      KK
Sbjct:  137 MTEEGTFVISGCERIVISQIIRSPGIYFRKEYGTNRKAIYTATIISNKGLWTKFILDRKK 196          
BLAST of mRNA_P-littoralis_Contig1346.2.1 vs. uniprot
Match: A0A3G2QZ39_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Synura uvella TaxID=52557 RepID=A0A3G2QZ39_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.890e-17
Identity = 47/81 (58.02%), Postives = 62/81 (76.54%), Query Frame = 0
Query:    1 MTEEGTFIINGYERIVISQIIRSPGLYFRKELITPRKTI-YTATLISDKGLWTN--LESKEKKED------LDQDKIFFTI 72
            MTEEGTF+I+G ERIVISQIIRSPG+YFRKE    RKTI Y+AT+IS+KGLWT   L+ K++KE       +++D+I+  +
Sbjct:  138 MTEEGTFVISGCERIVISQIIRSPGIYFRKEFGQNRKTIIYSATIISNKGLWTRFFLDQKKQKESELKENIINKDRIYMKL 218          
BLAST of mRNA_P-littoralis_Contig1346.2.1 vs. uniprot
Match: A0A3G2QYQ1_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Synura petersenii TaxID=52555 RepID=A0A3G2QYQ1_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 8.950e-17
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 0
Query:    1 MTEEGTFIINGYERIVISQIIRSPGLYFRKELITPRKTIYTATLISDKGLWTNLESKEK 59
            MTEEGTFII+G ERI+ISQIIRSPG+YFRKE    +KT YTAT+IS+KGLWT     +K
Sbjct:  149 MTEEGTFIISGCERIIISQIIRSPGIYFRKEFGLSKKTHYTATIISNKGLWTKFILDQK 207          
BLAST of mRNA_P-littoralis_Contig1346.2.1 vs. uniprot
Match: A0A3G2QZ03_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Synura sphagnicola TaxID=52556 RepID=A0A3G2QZ03_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.270e-16
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 MTEEGTFIINGYERIVISQIIRSPGLYFRKELITPRKTIYTATLISDKGLWTNL 54
            MTEEGTF+I+G ERIVISQIIRSPG+YFRKE    RK  YTAT+IS+KGLWT +
Sbjct:  138 MTEEGTFVISGCERIVISQIIRSPGIYFRKEFGLTRKINYTATIISNKGLWTKV 191          
BLAST of mRNA_P-littoralis_Contig1346.2.1 vs. uniprot
Match: A0A7S6PV59_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Poteriospumella lacustris TaxID=1117027 RepID=A0A7S6PV59_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.780e-14
Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = 0
Query:    1 MTEEGTFIINGYERIVISQIIRSPGLYFRKELITPRKTIYTATLISDKGLWT-----NLESKEKKEDLDQDKIFFTIYWIIIKY 79
            +TE+G+F +NG ER+V++QI+RSPG+YF+KE ++ +KTIY+AT ISD  LWT     N  S  KK++  ++    TI    +KY
Sbjct:  168 LTEDGSFFVNGCERVVVNQIVRSPGIYFKKEYLSSQKTIYSATFISDNWLWTKFRLENSSSITKKQNDIENAATNTITKPALKY 251          
BLAST of mRNA_P-littoralis_Contig1346.2.1 vs. uniprot
Match: A0A4D6WUJ9_9FLOR (DNA-directed RNA polymerase subunit beta n=1 Tax=Malaconema sp. TaxID=2575621 RepID=A0A4D6WUJ9_9FLOR)

HSP 1 Score: 77.0 bits (188), Expect = 4.460e-14
Identity = 44/113 (38.94%), Postives = 70/113 (61.95%), Query Frame = 0
Query:    1 MTEEGTFIINGYERIVISQIIRSPGLYFRKELITPRKTIYTATLISDKGLWTNLESKEKKE---DLDQDK-----IFFTIYWIIIKYHQRNIRQYK----ASLLFEAQQLTQE 101
            MT  GTFII+G ER++I+QI+RSPG+Y++KEL    K+IY+A LIS++G W   E   K +    +D++      IF     + ++  +R + +Y     ASLL+E ++L +E
Sbjct:  127 MTNRGTFIISGIERVIINQIVRSPGIYYKKELDKNNKSIYSANLISNRGSWLKFEIDSKNQIWVKIDKNYKVNAYIFLRAIGLQVQEIKRKLNKYSFLINASLLYEKKELYKE 239          
BLAST of mRNA_P-littoralis_Contig1346.2.1 vs. uniprot
Match: A0A1Z1M8S6_9FLOR (DNA-directed RNA polymerase subunit beta n=1 Tax=Caloglossa beccarii TaxID=131038 RepID=A0A1Z1M8S6_9FLOR)

HSP 1 Score: 76.3 bits (186), Expect = 8.300e-14
Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 0
Query:    1 MTEEGTFIINGYERIVISQIIRSPGLYFRKELITPRKTIYTATLISDKGLWTNLESKEKKED-LDQDKIFFTIYWIIIKYHQRNIRQYKASL 91
            MT  GTFII+G ERI+I+QIIRSPG+Y++KEL    K IY+A+LIS++G W   E   K +  +  DK +    +I +K    NI++ K+ L
Sbjct:  127 MTNRGTFIISGIERIIINQIIRSPGIYYKKELDKNNKLIYSASLISNRGSWLKFEIDAKNQIWVKIDKNYKINAYIFLKAIGLNIQEIKSKL 218          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1346.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6PUZ9_9STRA4.030e-3559.57DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A0D3MK66_9STRA4.060e-2346.67DNA-directed RNA polymerase subunit beta n=1 Tax=O... [more]
A0A3G2QZU6_9STRA9.590e-2063.89DNA-directed RNA polymerase subunit beta n=1 Tax=N... [more]
A0A3G2QZV3_9STRA2.150e-1873.33DNA-directed RNA polymerase subunit beta n=1 Tax=M... [more]
A0A3G2QZ39_9STRA1.890e-1758.02DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A3G2QYQ1_9STRA8.950e-1769.49DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A3G2QZ03_9STRA2.270e-1674.07DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A7S6PV59_9STRA1.780e-1446.43DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A4D6WUJ9_9FLOR4.460e-1438.94DNA-directed RNA polymerase subunit beta n=1 Tax=M... [more]
A0A1Z1M8S6_9FLOR8.300e-1445.65DNA-directed RNA polymerase subunit beta n=1 Tax=C... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.1100.10coord: 1..25
e-value: 1.9E-17
score: 64.3
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..75
IPR037034RNA polymerase Rpb2, domain 2 superfamilyGENE3D3.90.1110.10RNA polymerase Rpb2, domain 2coord: 26..60
e-value: 1.9E-17
score: 64.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1346contigP-littoralis_Contig1346:12788..13219 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1346.2.1mRNA_P-littoralis_Contig1346.2.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig1346 12767..18700 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1346.2.1 ID=prot_P-littoralis_Contig1346.2.1|Name=mRNA_P-littoralis_Contig1346.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
MTEEGTFIINGYERIVISQIIRSPGLYFRKELITPRKTIYTATLISDKGL
WTNLESKEKKEDLDQDKIFFTIYWIIIKYHQRNIRQYKASLLFEAQQLTQ
ESKKAANFYLKRKT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037034RNA_pol_Rpb2_2_sf