mRNA_P-littoralis_Contig134.50.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig134.50.2 vs. uniprot
Match: A0A6H5L195_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L195_9PHAE) HSP 1 Score: 1160 bits (3002), Expect = 0.000e+0 Identity = 918/1372 (66.91%), Postives = 962/1372 (70.12%), Query Frame = 1
Query: 1996 NRSLTREARLLLLEALAGATGRALGDVVFETT--GRGLTLSPAKKMS---GKSSDXXXXXXXXXXXXXXSTAI-AQPDPAWFATLRATARRAWGGDGDVDLES----LPPHLVLQEAGGFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVDGEGALVPEFSASIAARMAQELFSEMAAGKEPGRVSSRAQASLVRANFRSSLARSRGPAPPASLSDLADRTLTSFDEAGLELALAAGQLVADKLRIKAPKKAKAARTAGAXXXXXXXXXXXANATXXXXXXXXNXXXXXXX-------------------------------------QNTSGDAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNSGRRAD-----ASRPGELGGFWASSTLLQEGLACNYTAGAEIVLETMSKDGHWPMTSTYNTLLWYFRQERDAKGALSILQGLRECNNVKPDQLSYTLAIQACVWSGSCVEEAWAVVEEAEAAE---DYSFASKDLLDARLILVQAVGGDVMGGLKEMAARGVTADESTLLGVIEACAQRGDTNGALDVLQMMRGSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYACPRPSYRSYLAALTACSRALPAAAADEGXXXXXXXXXXXXXXXVVQGGGSGSGSGSGMVRGDWRASKEILRMMWEDEEARVAK--------------------------GDIAVPGTWSPGLQEALSLGPSHVTMPAVPDAACYQLAMECCVSRGRVDEALALLAEMEDRGLSPNEAALRALIRGFALEGLGDSEGXXXXXXXXXXXXXEQAARRWKGVENALGVFEELAERFDPPSRASFEQAIDACVSHPDGLQHAGDLISRMKAVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGAKSRTLGWEVEEDMFAALVGACTRSGEAENLSEAIGFLRMNGVNPPSEILSYLQNDEFESELYDEIFGEKDRAAGKAKDQRSRGRKYGTLALA-HLIGSGGAGXXXXXXXEG-----EDTEEVGPGGGKQGVASRGGRSDGSASLGGGREGARGGGKKGKDGAKLREEQTFAEAVLDILRRAEDRRTKSEQVEEDGGAFPGNPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKRQEAERLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNGVGAIPKSIDKPKGGFDGAAEGSGGDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSFSEEPSPALEAVVAGLRRKGSNSKWRSRRGSGMSIVPSQPSLRRKEKNGG 5850
NR LTREARL LLEALA ATGRALG+VVFET GRGLTL+P K+ XXXXXXXXXXXX +TAI AQPDPAWF TLRATARRAW G G D + PP LV EAGGFG AEVDGEGALVP F A IAARMAQELFSEMAAGKE GRVSSRAQASLVRA FRS+LA SRG APPASLS+LADRTLTSFDE LELAL AGQL AD+L+IK PK A+ XXXXXXXXXXX XXXXXXXX XXXXXXX + S D K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + + ASR GE+G FWA+STLLQE LACNYTAGAEIVL TMSK+G W TSTYNTLLWYFRQERDAKGALS+LQ LRE NVKPDQ SYTLAIQACVWSGS VEEAWA+VEEA+AA DYSFASKDLLDARL LVQAVGGDV+ GL+EM+ RGVTADEST+LGVIEACAQRGD GALD+LQMMRG+ XXXXXXXXXXXXXXXXXX CPRPSYRSYLAA XXXXXXXXXXXXX SG G VRGDWRA+KE+LRMMWEDE AR G +A GTWS LQEAL LGPSHVTMPAVPDAACYQLAMECCVS GR DEALALL+EME RGLSPNEAALRALIRGFALEG+ G E+A RRW+GVENALGVFEELAERFDPPSRASFEQAIDACVSHPDGLQHAGDLISRMK+VGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGA+SRTLGWEVEEDMFAALVGACTRSGEAEN+SEAIGFLRMNGVNPPSEILSYLQN+EFESELYDEIFGEKDR AGKAK+QRSRGRKYGT ALA HLI G G XXXX ED+ EV S R R GG K REEQTFAEA ILRRAE+RR K E+VEEDGGAF NPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKR+EAERLAAXXXXXXXXXXXXXXXXXXX S AIP+SIDKPKGGFD AAE XXXXX XXXXXXXXXXXXXXXXXXXXXX GS SEEPSP LEAVVAGLRRKGSNSK RSRRGSG+S VPSQP +RRK GG
Sbjct: 15 NRGLTREARLRLLEALAVATGRALGNVVFETAAAGRGLTLAPLSKIKQXXXXXXXXXXXXXXXXXXXASATAIVAQPDPAWFETLRATARRAWSGGGGCDADGNDLEAPPRLV-PEAGGFGCGNGGGGWVPVGARAAGTGR--------AEVDGEGALVPAFDARIAARMAQELFSEMAAGKEAGRVSSRAQASLVRAKFRSTLALSRGAAPPASLSELADRTLTSFDETDLELALQAGQLTADQLKIKNPKTTPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNVRGKERGSADVGKNKTKGREGPSSPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATSGQKEEKVERKAGPASRAGEMGRFWAASTLLQESLACNYTAGAEIVLHTMSKEGLWATTSTYNTLLWYFRQERDAKGALSMLQSLRESENVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAQAAATGGDYSFASKDLLDARLALVQAVGGDVLHGLREMSERGVTADESTMLGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXXXXATA-------------------VCPRPSYRSYLAAXX----------------XXXXXXXXXXXXXXXXXXXSGDG-----VRGDWRAAKEVLRMMWEDEAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGLAWCGTWSTELQEALRLGPSHVTMPAVPDAACYQLAMECCVSGGRNDEALALLSEMEGRGLSPNEAALRALIRGFALEGVVADGGGGGPAAER-----ERAERRWRGVENALGVFEELAERFDPPSRASFEQAIDACVSHPDGLQHAGDLISRMKSVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGARSRTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEFESELYDEIFGEKDRLAGKAKEQRSRGRKYGTHALAAHLIRGSGGGMVSXXXXXXXXXXXEDSGEVXXXXXXXXXXSASAR--------------RVGGNGAAGSIKNREEQTFAEAARGILRRAEERRMKVERVEEDGGAFSANPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKRREAERLAAXXXXXXXXXXXXXXXXXXXSG---------SAKTVAIPRSIDKPKGGFDAAAESXXXXXXXXXXRVGALXXXXXXXXXXXXXXXXXXXXXXGSRLEPRRKPVLVKTGGGGSGVQGSLSEEPSPVLEAVVAGLRRKGSNSKGRSRRGSGLSAVPSQPLVRRKGNGGG 1309
BLAST of mRNA_P-littoralis_Contig134.50.2 vs. uniprot
Match: D8LKT0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT0_ECTSI) HSP 1 Score: 1053 bits (2724), Expect = 0.000e+0 Identity = 789/1191 (66.25%), Postives = 828/1191 (69.52%), Query Frame = 1
Query: 2473 MAQELFSEMAAGKEPG-------------RVSSRAQASLVRANFRSSLARSRGPAPPASLSDLADRTLTSFDEAGLELALAAGQLVADKLRIKAPKKAKAARTAGAXXXXXXXXXXXANATXXXXXXXXNXXXXXXX--------------------------------------------QNTSGDAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNSGR----RADASRPGELGGFWASSTLLQEGLACNYTAGAEIVLETMSKDGHWPMTSTYNTLLWYFRQERDAKGALSILQGLRECNNVKPDQLSYTLAIQACVWSGSCVEEAWAVVEEAEAAE---DYSFASKDLLDARLILVQAVGGDVMGGLKEMAARGVTADESTLLGVIEACAQRGDTNGALDVLQMMRGSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYACPRPSYRSYLAALTACSRALPAAAADEGXXXXXXXXXXXXXXXVVQGGGSGSGSGSGMVRGDWRASKEILRMMWEDEEARVAKGDIAVPGTWSPGLQEALSLGPSHVTMPAVPDAACYQLAMECCVSRGRVDEALALLAEMEDRGLSPNEAALRALIRGFALEGLGDSEGXXXXXXXXXXXXXEQAARRWKGVENALGVFEELAERFDPPSRASFEQAIDACVSHPDGLQHAGDLISRMKAVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGAKSRTLGWEVEEDMFAALVGACTRSGEAENLSEAIGFLRMNGVNPPSEILSYLQNDEFESELYDEIFGEKDRAAGKAKDQRSRGRKYGTLALA-HLIGSGGAGXXXXXXXEGEDTEEVGPGGGKQGVASRGGRSDGSASLGGGREGARGGGKKGKDGAKLREEQTFAEAVLDILRRAEDRRTKSEQVEEDGGAFPGNPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKRQEAERLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNGVGAIPKSIDKPKGGFDGAAEGSGGDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSFSEEPSPALEAVVAGLRRKGSNSKWRSRRGSGMSIVPSQPSLRRKEKNGG 5850
MAQELFSEMAAGKE G RVSSRAQASLVRA FRS+LARSRG APPASLSDLADRTLTSFDE LELAL AGQL AD+L+IK P A+ + XXXXXXXXXXX XXXXXXXX XXXXXXX + S D K XXXXXXXXXXXXXXXX XXXXXXXX + A ASR GE+G FWA+STLLQE LACNYTAGAEIVL+TMS +G W TSTYNT LWYFRQERDAKGALS+LQ LRE NVKPDQ SYTLAIQACVWSGS VEEAWA+VEEAEA D SFASKDLLDARL+LVQAVGGDV+ GLKEM+ RGVTADEST+LGVIEACAQRGD GALD+LQMMRG+ XXXXXXXXXXXXXXX CPRPSYRSYLAAL XXXXXXXXXX SG G VRGDWRA+KE+LRMMWEDE AR AKGD+AVPGTWS LQEALSLGPSHVTMPAVPDAACYQLAMECCVS GR DEAL LL+EME RGLSPNEAALRALIRGFALEG+ G E+A RRW+GVENALGVFEELAERFDPPSRASFEQAIDACVSHPDGLQHAGDLISRMK+VGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGA+SRTLGWEVEEDMFAALVGACTRSGEAEN+SEAIGFLRMNGVNPPSEILSYLQN+EFESELYDEIFGEKDR AGKAK+QRSRGRKYGT ALA HLIG G XXXXXXX TFAEAV DILRRAE+RR + E+VEEDGGAFP NPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKR+EAERLAAXXXXXXXXXXXXXXXXXXXXXXXXX AIPKSIDKPKGGFD AAE +GGD XXXXXXXXXXXXXXXXXXX GS SEEPSP LEAVVAGLRRKGSNSK RSRRGSG+S VPSQP ++RKE GG
Sbjct: 1 MAQELFSEMAAGKEAGSRQPTSPRRFAPVRVSSRAQASLVRAKFRSTLARSRGAAPPASLSDLADRTLTSFDETDLELALQAGQLTADQLKIKNPTTTPASASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNARGKERGSADVGKNKTKGGRGQPSPAAAKGGXXXXXXXXXXXXXXXXTXXXXXXXXASGKEKLQRGGSGDAETATGGQKKEKVERKAAPASRAGEMGRFWAASTLLQESLACNYTAGAEIVLDTMSNEGLWATTSTYNTFLWYFRQERDAKGALSMLQSLRESENVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAEAVATGGDSSFASKDLLDARLVLVQAVGGDVLQGLKEMSERGVTADESTMLGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXTTA----------------------VCPRPSYRSYLAALX-------------------XXXXXXXXXXXXXXXXSGDG-----VRGDWRAAKEVLRMMWEDEAARAAKGDVAVPGTWSTELQEALSLGPSHVTMPAVPDAACYQLAMECCVSGGRNDEALGLLSEMEGRGLSPNEAALRALIRGFALEGVVADGGGGGPAADR-----ERAERRWRGVENALGVFEELAERFDPPSRASFEQAIDACVSHPDGLQHAGDLISRMKSVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGARSRTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEFESELYDEIFGEKDRLAGKAKEQRSRGRKYGTHALAAHLIGGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXTFAEAVRDILRRAEERRKRVERVEEDGGAFPANPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKRREAERLAAXXXXXXXXXXXXXXXXXXXXXXXXXAKTV------AIPKSIDKPKGGFDAAAESAGGDGARRRGRVGALSAHXXXXXXXXXXXXXXXXXXXGSRLEPRRKPVLVKTGGGGSGVQGSLSEEPSPVLEAVVAGLRRKGSNSKGRSRRGSGLSAVPSQPMVKRKENGGG 1125
BLAST of mRNA_P-littoralis_Contig134.50.2 vs. uniprot
Match: A0A6H5KDS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS3_9PHAE) HSP 1 Score: 200 bits (509), Expect = 3.800e-56 Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 1
Query: 4393 RASFEQAIDACVSHPDGLQHAGDLISRMKAVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGAKSRTLGWEVEEDMFAALVGACTR 4689
RASFEQAIDACVSHPDGLQHAGDLISRMK+VGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGA+SRTLGWEVEEDMFAALVGACTR
Sbjct: 9 RASFEQAIDACVSHPDGLQHAGDLISRMKSVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGARSRTLGWEVEEDMFAALVGACTR 107
BLAST of mRNA_P-littoralis_Contig134.50.2 vs. uniprot
Match: A0A6H5L1W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W2_9PHAE) HSP 1 Score: 213 bits (543), Expect = 3.230e-55 Identity = 136/192 (70.83%), Postives = 141/192 (73.44%), Query Frame = 1
Query: 1435 HDE--VDPGTVAAEEFAELAARCLGSALPEIALEA---FSLYNRAAASGLQPHTKPLLPPFPLTTDDADDGVGDDHSISDASSRQRRDAEISLLVTAARAHIAMGGVLDGLALIDDATGIGGXXXXXXXXXXXXXXXALRASGRWGGDGEAGAGLARLGDGDASAVAEELCVSGGSVGLRAALRLRERLAEE 1995
HD V VAAEEFAELAARCLGSALPEIALEA SLY RA ASGLQP T LLP +PLTTDD D DD R+R DAE+SLLVTAARAHIAMGGVLDG+ALIDDAT IGG ALRA+GRWGGDG AGAGLARLGDGDAS VAEELCVSGG GLRAALRLRERLAEE
Sbjct: 362 HDSTAVAAAAVAAEEFAELAARCLGSALPEIALEASVAHSLYVRAEASGLQPRTTALLPEYPLTTDDVDTQDDDD-----GHWRRRWDAEVSLLVTAARAHIAMGGVLDGIALIDDATAIGGDGASAAA--------ALRAAGRWGGDGVAGAGLARLGDGDASTVAEELCVSGGDTGLRAALRLRERLAEE 540
BLAST of mRNA_P-littoralis_Contig134.50.2 vs. uniprot
Match: A0A7S0BNT0_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BNT0_9RHOD) HSP 1 Score: 74.3 bits (181), Expect = 9.610e-10 Identity = 39/148 (26.35%), Postives = 73/148 (49.32%), Query Frame = 1
Query: 4390 SRASFEQAIDACVSHPDGLQHAGDLISRMKAVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGAKSRTLGWEVEEDMFAALVGACTRSGEAENLSEAIGFLRMNGVNPPSEILSYLQNDEF----ESELYDEIFG 4821
+R ++ + +DAC+ HP G+ HA + M A+G + ++Y+ L++G+G AR L + F+ + G EV E F A++ AC EAI + +G+ P +++ YLQN + ++++ ++FG
Sbjct: 234 NRTAYRRMVDACLKHPQGIAHACTTLEEMTAMGFSMDNEYYDTLLKGYGRARELEKVVARFRNVNR---------------PGPEVGEVTFGAVLNACNNEESLPTADEAIDRMVSSGIRPTRQMMDYLQNGKSVAKSKNKIMQDVFG 366 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig134.50.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig134.50.2 >prot_P-littoralis_Contig134.50.2 ID=prot_P-littoralis_Contig134.50.2|Name=mRNA_P-littoralis_Contig134.50.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1912bp MRALATTLVLGTATTVFLLIGTATIVDGMRPSSGGPQRHHRQALVSWRGSback to top mRNA from alignment at P-littoralis_Contig134:273680..296705+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig134.50.2 ID=mRNA_P-littoralis_Contig134.50.2|Name=mRNA_P-littoralis_Contig134.50.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=23026bp|location=Sequence derived from alignment at P-littoralis_Contig134:273680..296705+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig134:273680..296705+ >mRNA_P-littoralis_Contig134.50.2 ID=mRNA_P-littoralis_Contig134.50.2|Name=mRNA_P-littoralis_Contig134.50.2|organism=Pylaiella littoralis U1_48|type=CDS|length=5736bp|location=Sequence derived from alignment at P-littoralis_Contig134:273680..296705+ (Pylaiella littoralis U1_48)back to top |