mRNA_P-littoralis_Contig133.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig133.8.1
Unique NamemRNA_P-littoralis_Contig133.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig133.8.1 vs. uniprot
Match: A0A6H5L0L4_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L4_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 4.080e-26
Identity = 60/130 (46.15%), Postives = 83/130 (63.85%), Query Frame = -1
Query:    1 LLVWVFGYNDFSSLREVMDKNPASYQDLAMFLSRTISSQVASAADVRHAMRG-EPEPAGASDNHTPPAGDPLERPATECIAVTPPAACFPPPEVARDSTAEDEYIRDFHADLANITTKSNTHSCTFTCHK 387
            LLVWV+GYNDF+S RE+MDK P  Y +LA +L + I +Q+A+ +D+ H MRG +P P   +D   PP  D L RPA E +AV PP++CFP     R++  +D+Y    + DLA +T  +N H C  TC K
Sbjct:  748 LLVWVYGYNDFASFRELMDKTPTRYFELAEYLDKVIFNQIATLSDINHVMRGVQPSPEVETDAPAPPP-DQLMRPAKERMAVPPPSSCFPRDGQPRNNVHDDKYAHLMYLDLAGLTGGANLHKCQATCRK 876          
BLAST of mRNA_P-littoralis_Contig133.8.1 vs. uniprot
Match: A0A6H5K8N9_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N9_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 5.480e-26
Identity = 60/130 (46.15%), Postives = 83/130 (63.85%), Query Frame = -1
Query:    1 LLVWVFGYNDFSSLREVMDKNPASYQDLAMFLSRTISSQVASAADVRHAMRG-EPEPAGASDNHTPPAGDPLERPATECIAVTPPAACFPPPEVARDSTAEDEYIRDFHADLANITTKSNTHSCTFTCHK 387
            LLVWV+GYNDF+S RE+MDK P  Y +LA +L + I +Q+A+ +D+ H MRG +P P   +D   PP  D L RPA E +AV PP++CFP     R++  +D+Y    + DLA +T  +N H C  TC K
Sbjct:  668 LLVWVYGYNDFASFRELMDKTPTRYFELAEYLDKVIFNQIATLSDINHVMRGVQPSPEVETDVPAPPP-DQLMRPAKERMAVPPPSSCFPRDGQPRNNVHDDKYAHLMYLDLAGLTGGANLHKCQATCRK 796          
BLAST of mRNA_P-littoralis_Contig133.8.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.580e-21
Identity = 58/134 (43.28%), Postives = 72/134 (53.73%), Query Frame = -1
Query:    1 LLVWVFGYNDFSSLREVMDKNPASYQDLAMFLSRTISSQVASAADVRHAMRGEPEPAGASDNHTPPAGD-----PLERPATECIAVTPPAACFPPPEVARDSTAEDEYIRDFHADLANITTKSNTHSCTFTCHK 387
            LLVWVFGYNDF+S R++MD+ PA Y +LA +L   I +QVA+ AD+   M G     G     T P GD     P  R A EC+   PP  CFP     R    + +Y R  + DLA IT  +N H C  TC K
Sbjct:  749 LLVWVFGYNDFASFRDLMDRTPARYTELAQYLDNIIFNQVATLADITRVMHG-----GVEGISTLPVGDTCQTDPNHRHAKECLPTAPPTNCFPRDGEDRCPVHDQDYARLMYLDLAGITPGANLHKCNATCTK 877          
BLAST of mRNA_P-littoralis_Contig133.8.1 vs. uniprot
Match: A0A6H5J5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5A5_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 5.320e-21
Identity = 60/130 (46.15%), Postives = 74/130 (56.92%), Query Frame = -1
Query:    1 LLVWVFGYNDFSSLREVMDKNPASYQDLAMFLSRTISSQVASAADVRHAMRGEPEPAGASDNHTPP-AGDPLERPATECIAVTPPAACFPPPEVARDSTAEDEYIRDFHADLANITTKSNTHSCTFTCHK 387
            ++VWV+G+N+FSS R++MDK P  Y+ LA FL R I +QVAS ADV  AM G      AS    P    DPL RPA E +A  P  ACFP   V R    +D Y R  + DLA +   +  H C  TCHK
Sbjct:  494 VVVWVYGFNEFSSFRDLMDKRPEKYK-LARFLERVIFNQVASFADVNLAMHGHDHTPRASSELEPENVSDPLVRPAKERMAQPPSPACFPRQGVKRCPVHDDSYARLMYLDLAELVPGAQLHRCQPTCHK 622          
BLAST of mRNA_P-littoralis_Contig133.8.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 6.880e-18
Identity = 58/133 (43.61%), Postives = 71/133 (53.38%), Query Frame = -1
Query:    1 LLVWVFGYNDFSSLREVMDKNPASYQDLAMFLSRTISSQVASAADVRHAMRG---EPEPAGASDNHTPPAG-DPLERPATECIAVTPPAACFPPPEVARDSTAEDEYIRDFHADLANITTKSNTHSCTFTCHK 387
            LLVWV+GYNDFS  RE+MDK+P  Y  LA FL + I +QVA+  D   A  G   E     + D  T  AG DP    A E IA  PP ACFP   V R    ++ + R  + DLA IT   + H C   C+K
Sbjct:  757 LLVWVYGYNDFSIFRELMDKSPEKYNKLARFLEQVIFNQVATLTDTNLAFDGHEYEHMSRASEDTGTSEAGPDPQHVAAKERIARPPPTACFPRDGVDRCRVHDEAFSRLVYLDLAEITPAVSLHKCQLACNK 889          
BLAST of mRNA_P-littoralis_Contig133.8.1 vs. uniprot
Match: A0A6H5K882_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K882_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.590e-14
Identity = 53/129 (41.09%), Postives = 66/129 (51.16%), Query Frame = -1
Query:    1 LLVWVFGYNDFSSLREVMDKNPASYQDLAMFLSRTISSQVASAADVRHAMRGEPEPAGASDNHTPPAGDPLERPATECIAVTPPAACFPPPEVARDSTAEDEYIRDFHADLANITTKSNTHSCTFTCHK 387
            +LVWV+G+NDFSS R++MDK P  Y  LA FL R I +QV S A+V  AM G         +HTP A         E   V+ P   FP   V R    +D Y R  + DLA +   +  H C  TCHK
Sbjct:  461 VLVWVYGFNDFSSFRDLMDKRPEKYNKLARFLERVIFNQVVSFANVNLAMHGH--------DHTPRASS-----EPEPENVSDPLHAFP---VERCFVHDDSYPRFMYLDLAELVPGAQLHRCQPTCHK 573          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig133.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L0L4_9PHAE4.080e-2646.15Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5K8N9_9PHAE5.480e-2646.15Helitron_like_N domain-containing protein n=1 Tax=... [more]
D7G3U9_ECTSI1.580e-2143.28ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5J5A5_9PHAE5.320e-2146.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN07_9PHAE6.880e-1843.61ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K882_9PHAE1.590e-1441.09ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig133contigP-littoralis_Contig133:29470..29857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size388
Hectar predicted targeting categoryother localisation
Exons1
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789608.117467-CDS-P-littoralis_Contig133:29470..298571680789608.117467-CDS-P-littoralis_Contig133:29470..29857Pylaiella littoralis U1_48CDSP-littoralis_Contig133 29471..29857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig133.8.1prot_P-littoralis_Contig133.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig133 29471..29857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig133.8.1

>prot_P-littoralis_Contig133.8.1 ID=prot_P-littoralis_Contig133.8.1|Name=mRNA_P-littoralis_Contig133.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp
LVAGERARVGVGLGCDVGQVSVEVANVLVFCSGIPCDFRRREACRRWCNR
DALCGRAFKRVTSRRRVVIACARRLGLAPHGVADVGRRGNLRGDGTAQEH
GKVLVAGRVLVHDLPQAGKIIVAEDPHQE
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mRNA from alignment at P-littoralis_Contig133:29470..29857-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig133.8.1 ID=mRNA_P-littoralis_Contig133.8.1|Name=mRNA_P-littoralis_Contig133.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=388bp|location=Sequence derived from alignment at P-littoralis_Contig133:29470..29857- (Pylaiella littoralis U1_48)
CTTGTGGCAGGTGAACGTGCAAGAGTGGGTGTTGGACTTGGTTGTGATGT TGGCCAGGTCAGCGTGGAAGTCGCGAATGTACTCGTCTTCTGCAGTGGAA TCCCGTGCGACTTCAGGCGGAGGGAAGCATGCCGCCGGTGGTGTAACCGC GATGCACTCTGTGGCCGGGCGTTCAAGAGGGTCACCAGCAGGAGGCGTGT GGTTATCGCTTGCGCCCGCCGGCTCGGGCTCGCCCCTCATGGCGTGGCGG ACGTCGGCCGCCGAGGCAACTTGCGAGGAGATGGTACGGCTCAGGAACAT GGCAAGGTCTTGGTAGCTGGCAGGGTTCTTGTCCATGACCTCCCTCAAGC TGGAAAAATCATTGTAGCCGAAGACCCACACCAGGAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig133:29470..29857-

>mRNA_P-littoralis_Contig133.8.1 ID=mRNA_P-littoralis_Contig133.8.1|Name=mRNA_P-littoralis_Contig133.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig133:29470..29857- (Pylaiella littoralis U1_48)
CTTGTGGCAGGTGAACGTGCAAGAGTGGGTGTTGGACTTGGTTGTGATGT
TGGCCAGGTCAGCGTGGAAGTCGCGAATGTACTCGTCTTCTGCAGTGGAA
TCCCGTGCGACTTCAGGCGGAGGGAAGCATGCCGCCGGTGGTGTAACCGC
GATGCACTCTGTGGCCGGGCGTTCAAGAGGGTCACCAGCAGGAGGCGTGT
GGTTATCGCTTGCGCCCGCCGGCTCGGGCTCGCCCCTCATGGCGTGGCGG
ACGTCGGCCGCCGAGGCAACTTGCGAGGAGATGGTACGGCTCAGGAACAT
GGCAAGGTCTTGGTAGCTGGCAGGGTTCTTGTCCATGACCTCCCTCAAGC
TGGAAAAATCATTGTAGCCGAAGACCCACACCAGGAG
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