mRNA_P-littoralis_Contig133.8.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig133.8.1 vs. uniprot
Match: A0A6H5L0L4_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L4_9PHAE) HSP 1 Score: 112 bits (279), Expect = 4.080e-26 Identity = 60/130 (46.15%), Postives = 83/130 (63.85%), Query Frame = -1
Query: 1 LLVWVFGYNDFSSLREVMDKNPASYQDLAMFLSRTISSQVASAADVRHAMRG-EPEPAGASDNHTPPAGDPLERPATECIAVTPPAACFPPPEVARDSTAEDEYIRDFHADLANITTKSNTHSCTFTCHK 387
LLVWV+GYNDF+S RE+MDK P Y +LA +L + I +Q+A+ +D+ H MRG +P P +D PP D L RPA E +AV PP++CFP R++ +D+Y + DLA +T +N H C TC K
Sbjct: 748 LLVWVYGYNDFASFRELMDKTPTRYFELAEYLDKVIFNQIATLSDINHVMRGVQPSPEVETDAPAPPP-DQLMRPAKERMAVPPPSSCFPRDGQPRNNVHDDKYAHLMYLDLAGLTGGANLHKCQATCRK 876
BLAST of mRNA_P-littoralis_Contig133.8.1 vs. uniprot
Match: A0A6H5K8N9_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N9_9PHAE) HSP 1 Score: 111 bits (278), Expect = 5.480e-26 Identity = 60/130 (46.15%), Postives = 83/130 (63.85%), Query Frame = -1
Query: 1 LLVWVFGYNDFSSLREVMDKNPASYQDLAMFLSRTISSQVASAADVRHAMRG-EPEPAGASDNHTPPAGDPLERPATECIAVTPPAACFPPPEVARDSTAEDEYIRDFHADLANITTKSNTHSCTFTCHK 387
LLVWV+GYNDF+S RE+MDK P Y +LA +L + I +Q+A+ +D+ H MRG +P P +D PP D L RPA E +AV PP++CFP R++ +D+Y + DLA +T +N H C TC K
Sbjct: 668 LLVWVYGYNDFASFRELMDKTPTRYFELAEYLDKVIFNQIATLSDINHVMRGVQPSPEVETDVPAPPP-DQLMRPAKERMAVPPPSSCFPRDGQPRNNVHDDKYAHLMYLDLAGLTGGANLHKCQATCRK 796
BLAST of mRNA_P-littoralis_Contig133.8.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 1.580e-21 Identity = 58/134 (43.28%), Postives = 72/134 (53.73%), Query Frame = -1
Query: 1 LLVWVFGYNDFSSLREVMDKNPASYQDLAMFLSRTISSQVASAADVRHAMRGEPEPAGASDNHTPPAGD-----PLERPATECIAVTPPAACFPPPEVARDSTAEDEYIRDFHADLANITTKSNTHSCTFTCHK 387
LLVWVFGYNDF+S R++MD+ PA Y +LA +L I +QVA+ AD+ M G G T P GD P R A EC+ PP CFP R + +Y R + DLA IT +N H C TC K
Sbjct: 749 LLVWVFGYNDFASFRDLMDRTPARYTELAQYLDNIIFNQVATLADITRVMHG-----GVEGISTLPVGDTCQTDPNHRHAKECLPTAPPTNCFPRDGEDRCPVHDQDYARLMYLDLAGITPGANLHKCNATCTK 877
BLAST of mRNA_P-littoralis_Contig133.8.1 vs. uniprot
Match: A0A6H5J5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5A5_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 5.320e-21 Identity = 60/130 (46.15%), Postives = 74/130 (56.92%), Query Frame = -1
Query: 1 LLVWVFGYNDFSSLREVMDKNPASYQDLAMFLSRTISSQVASAADVRHAMRGEPEPAGASDNHTPP-AGDPLERPATECIAVTPPAACFPPPEVARDSTAEDEYIRDFHADLANITTKSNTHSCTFTCHK 387
++VWV+G+N+FSS R++MDK P Y+ LA FL R I +QVAS ADV AM G AS P DPL RPA E +A P ACFP V R +D Y R + DLA + + H C TCHK
Sbjct: 494 VVVWVYGFNEFSSFRDLMDKRPEKYK-LARFLERVIFNQVASFADVNLAMHGHDHTPRASSELEPENVSDPLVRPAKERMAQPPSPACFPRQGVKRCPVHDDSYARLMYLDLAELVPGAQLHRCQPTCHK 622
BLAST of mRNA_P-littoralis_Contig133.8.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 6.880e-18 Identity = 58/133 (43.61%), Postives = 71/133 (53.38%), Query Frame = -1
Query: 1 LLVWVFGYNDFSSLREVMDKNPASYQDLAMFLSRTISSQVASAADVRHAMRG---EPEPAGASDNHTPPAG-DPLERPATECIAVTPPAACFPPPEVARDSTAEDEYIRDFHADLANITTKSNTHSCTFTCHK 387
LLVWV+GYNDFS RE+MDK+P Y LA FL + I +QVA+ D A G E + D T AG DP A E IA PP ACFP V R ++ + R + DLA IT + H C C+K
Sbjct: 757 LLVWVYGYNDFSIFRELMDKSPEKYNKLARFLEQVIFNQVATLTDTNLAFDGHEYEHMSRASEDTGTSEAGPDPQHVAAKERIARPPPTACFPRDGVDRCRVHDEAFSRLVYLDLAEITPAVSLHKCQLACNK 889
BLAST of mRNA_P-littoralis_Contig133.8.1 vs. uniprot
Match: A0A6H5K882_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K882_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 1.590e-14 Identity = 53/129 (41.09%), Postives = 66/129 (51.16%), Query Frame = -1
Query: 1 LLVWVFGYNDFSSLREVMDKNPASYQDLAMFLSRTISSQVASAADVRHAMRGEPEPAGASDNHTPPAGDPLERPATECIAVTPPAACFPPPEVARDSTAEDEYIRDFHADLANITTKSNTHSCTFTCHK 387
+LVWV+G+NDFSS R++MDK P Y LA FL R I +QV S A+V AM G +HTP A E V+ P FP V R +D Y R + DLA + + H C TCHK
Sbjct: 461 VLVWVYGFNDFSSFRDLMDKRPEKYNKLARFLERVIFNQVVSFANVNLAMHGH--------DHTPRASS-----EPEPENVSDPLHAFP---VERCFVHDDSYPRFMYLDLAELVPGAQLHRCQPTCHK 573 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig133.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig133.8.1 >prot_P-littoralis_Contig133.8.1 ID=prot_P-littoralis_Contig133.8.1|Name=mRNA_P-littoralis_Contig133.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp LVAGERARVGVGLGCDVGQVSVEVANVLVFCSGIPCDFRRREACRRWCNRback to top mRNA from alignment at P-littoralis_Contig133:29470..29857- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig133.8.1 ID=mRNA_P-littoralis_Contig133.8.1|Name=mRNA_P-littoralis_Contig133.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=388bp|location=Sequence derived from alignment at P-littoralis_Contig133:29470..29857- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig133:29470..29857- >mRNA_P-littoralis_Contig133.8.1 ID=mRNA_P-littoralis_Contig133.8.1|Name=mRNA_P-littoralis_Contig133.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig133:29470..29857- (Pylaiella littoralis U1_48)back to top |