mRNA_P-littoralis_Contig1322.3.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5KR64_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR64_9PHAE) HSP 1 Score: 203 bits (516), Expect = 1.340e-63 Identity = 104/152 (68.42%), Postives = 124/152 (81.58%), Query Frame = 2
Query: 2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQP---NSSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLP 448
+VD+SYAD DRRS +G+A VGG VV + TQP S+ ++EYIAAGEGV+EALFVR VLSFIAPETSG+TI+V EDNEGA+AL+QNP SS+RSKHIDVRFHFIRELF++G I+ ++V TEEQHAD+LTK L R YHRKALMNLP
Sbjct: 60 FVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNPFSSARSKHIDVRFHFIRELFKAGKITADYVSTEEQHADMLTKVLGRGKLEYHRKALMNLP 211
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE) HSP 1 Score: 208 bits (530), Expect = 1.470e-63 Identity = 113/153 (73.86%), Postives = 129/153 (84.31%), Query Frame = 2
Query: 2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPN---SSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 451
YVDASYAD DRRSVSG+AT VGG V+SH S TQ SS ++EYIAAGEGV+EALFVR VLSFIAPETSGS+I+VLEDN+GAMAL+QNPLSS+RSKHIDVR+HFIR LFRSG IS++ V T EQHADVLTKA S+ +YHR+ LMNLPE
Sbjct: 230 YVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGEISIKFVSTSEQHADVLTKAHSKSSLQYHRRKLMNLPE 381
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE) HSP 1 Score: 209 bits (533), Expect = 6.660e-62 Identity = 113/153 (73.86%), Postives = 130/153 (84.97%), Query Frame = 2
Query: 2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPN---SSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 451
YVDASYAD DRRSVSG+AT VGG V+SH S TQ SS ++EYIAAGEGV+EALFVR VLSFIAPETSGS+I+VLEDN+GAMAL+QNPLSS+RSKHIDVR+HFIR LFRSG IS++ V T EQHAD+LTKALS+ +YHR+ LMNLPE
Sbjct: 445 YVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLPE 596
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE) HSP 1 Score: 203 bits (517), Expect = 1.010e-61 Identity = 108/152 (71.05%), Postives = 126/152 (82.89%), Query Frame = 2
Query: 2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQ---PNSSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLP 448
YVDASYAD RRSV+GIA VGG VVSH S TQ S++++EYIAAGEGV+EALFVR VLSFIAPETSG+ IKVLEDN+GA++L+QNP SS+RSKHIDVRFHFIRELF+SG ISVE++ T+EQHAD+LTKAL R HR ALMN+P
Sbjct: 219 YVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNIP 370
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5KGI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI0_9PHAE) HSP 1 Score: 203 bits (517), Expect = 1.500e-61 Identity = 111/153 (72.55%), Postives = 128/153 (83.66%), Query Frame = 2
Query: 2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPN---SSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 451
YVDASYAD D+RSV+G+AT VGG VVSH S TQ SS ++EYIAAGEGV+EALFVR VLSF+APETSGS+IKVLEDN+GA+AL+QNPLSS R+KHIDVR+HFI LFRSG ISV+ V T EQHAD+LTKALSR +YHR+ LMNLPE
Sbjct: 235 YVDASYADTE-DKRSVTGMATTVGGTVVSHGSKTQSILSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIHGLFRSGDISVKFVPTTEQHADLLTKALSRANLQYHRRKLMNLPE 386
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5KCR8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR8_9PHAE) HSP 1 Score: 196 bits (498), Expect = 3.080e-61 Identity = 101/152 (66.45%), Postives = 122/152 (80.26%), Query Frame = 2
Query: 2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQP---NSSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLP 448
+VD+SYAD DRRS +G+A VGG VV + TQP S+ ++EYIAAGEGV+EALFVR VLSFIAPETSG+TI+V EDNEGA+AL+QNP SS+RSKHIDVRF FIREL ++G I+ +++ TEEQHAD+LTK L R YHRKALMNLP
Sbjct: 33 FVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNPFSSTRSKHIDVRFPFIRELVKAGKITADYISTEEQHADMLTKVLGRGKLEYHRKALMNLP 184
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE) HSP 1 Score: 202 bits (515), Expect = 5.940e-61 Identity = 104/151 (68.87%), Postives = 124/151 (82.12%), Query Frame = 2
Query: 2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQP---NSSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNL 445
+VD+SYAD DRRS +G+A VGG VV + TQP S+ ++EYIAAGEGV+EALFVR VLSFIAPETSG+TI+VLEDNEGA+AL+QNP SS+RSKHIDVRFHFIRELF++G I+ ++V TEEQHAD+LTK L R YHRKALMNL
Sbjct: 261 FVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVLEDNEGALALVQNPFSSARSKHIDVRFHFIRELFKAGKITADYVSTEEQHADMLTKVLGRGKLEYHRKALMNL 411
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5JFV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV7_9PHAE) HSP 1 Score: 197 bits (501), Expect = 1.220e-60 Identity = 103/152 (67.76%), Postives = 124/152 (81.58%), Query Frame = 2
Query: 2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQ---PNSSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLP 448
+VDASYAD+ DRRS +G+A VGG VV + Q S++++EY+AAGEGVREALFVR VLSFIAPETS + IKVLEDN+GA+ALI+NP SS+RSKHIDVRFH+IRELF+SG I+ E+V T EQHAD+LTK L R+ F YHRKALMNLP
Sbjct: 111 FVDASYADNEVDRRSTTGLAVTVGGTVVCASTKAQRVSAQSTSEAEYMAAGEGVREALFVRGVLSFIAPETSEAKIKVLEDNKGALALIENPFSSARSKHIDVRFHYIRELFKSGKITAEYVPTGEQHADMLTKVLGREKFEYHRKALMNLP 262
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE) HSP 1 Score: 200 bits (508), Expect = 2.390e-60 Identity = 103/152 (67.76%), Postives = 125/152 (82.24%), Query Frame = 2
Query: 2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQP---NSSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLP 448
+VDASYAD+ DRRS +G+A VGG VV + TQP S++++EY+AAGEGV+EALFVR VLSFIAPETSG+ IKVLEDN+GA+A+ +NP SS+RSKHIDVRFHFIRELF+SG I+ E+V T EQHAD+LTK L R+ YHRKALMNLP
Sbjct: 221 FVDASYADNEVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTSEAEYMAAGEGVKEALFVRGVLSFIAPETSGAKIKVLEDNKGALAMFENPFSSARSKHIDVRFHFIRELFKSGKITAEYVPTGEQHADMLTKVLGREKSEYHRKALMNLP 372
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 204 bits (518), Expect = 4.660e-60 Identity = 112/160 (70.00%), Postives = 129/160 (80.62%), Query Frame = 2
Query: 2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPN---SSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE*ATVFPS 472
YVDASYAD DRRSVSG+AT VGG V+SH S TQ SS ++EYIAAGEGV+EALFVR VLSFIAPETSGS+I+VLEDN+GAMAL+QNPLSS+RSKHIDVR+HFIR LFRSG IS++ V T EQHAD+LTKALS+ +YHR+ LMN A S
Sbjct: 358 YVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNFAGVAAAVSS 516 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1322.3.1 >prot_P-littoralis_Contig1322.3.1 ID=prot_P-littoralis_Contig1322.3.1|Name=mRNA_P-littoralis_Contig1322.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp MVGGAVVSHKSSTQPNSSADSEYIAAGEGVREALFVRHVLSFIAPETSGSback to top mRNA from alignment at P-littoralis_Contig1322:24711..25200+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1322.3.1 ID=mRNA_P-littoralis_Contig1322.3.1|Name=mRNA_P-littoralis_Contig1322.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=490bp|location=Sequence derived from alignment at P-littoralis_Contig1322:24711..25200+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1322:24711..25200+ >mRNA_P-littoralis_Contig1322.3.1 ID=mRNA_P-littoralis_Contig1322.3.1|Name=mRNA_P-littoralis_Contig1322.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig1322:24711..25200+ (Pylaiella littoralis U1_48)back to top |