mRNA_P-littoralis_Contig1322.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1322.3.1
Unique NamemRNA_P-littoralis_Contig1322.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5KR64_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR64_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 1.340e-63
Identity = 104/152 (68.42%), Postives = 124/152 (81.58%), Query Frame = 2
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQP---NSSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLP 448
            +VD+SYAD   DRRS +G+A  VGG VV   + TQP    S+ ++EYIAAGEGV+EALFVR VLSFIAPETSG+TI+V EDNEGA+AL+QNP SS+RSKHIDVRFHFIRELF++G I+ ++V TEEQHAD+LTK L R    YHRKALMNLP
Sbjct:   60 FVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNPFSSARSKHIDVRFHFIRELFKAGKITADYVSTEEQHADMLTKVLGRGKLEYHRKALMNLP 211          
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 1.470e-63
Identity = 113/153 (73.86%), Postives = 129/153 (84.31%), Query Frame = 2
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPN---SSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 451
            YVDASYAD   DRRSVSG+AT VGG V+SH S TQ     SS ++EYIAAGEGV+EALFVR VLSFIAPETSGS+I+VLEDN+GAMAL+QNPLSS+RSKHIDVR+HFIR LFRSG IS++ V T EQHADVLTKA S+   +YHR+ LMNLPE
Sbjct:  230 YVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGEISIKFVSTSEQHADVLTKAHSKSSLQYHRRKLMNLPE 381          
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 6.660e-62
Identity = 113/153 (73.86%), Postives = 130/153 (84.97%), Query Frame = 2
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPN---SSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 451
            YVDASYAD   DRRSVSG+AT VGG V+SH S TQ     SS ++EYIAAGEGV+EALFVR VLSFIAPETSGS+I+VLEDN+GAMAL+QNPLSS+RSKHIDVR+HFIR LFRSG IS++ V T EQHAD+LTKALS+   +YHR+ LMNLPE
Sbjct:  445 YVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLPE 596          
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 1.010e-61
Identity = 108/152 (71.05%), Postives = 126/152 (82.89%), Query Frame = 2
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQ---PNSSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLP 448
            YVDASYAD    RRSV+GIA  VGG VVSH S TQ     S++++EYIAAGEGV+EALFVR VLSFIAPETSG+ IKVLEDN+GA++L+QNP SS+RSKHIDVRFHFIRELF+SG ISVE++ T+EQHAD+LTKAL R     HR ALMN+P
Sbjct:  219 YVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNIP 370          
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5KGI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI0_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 1.500e-61
Identity = 111/153 (72.55%), Postives = 128/153 (83.66%), Query Frame = 2
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPN---SSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 451
            YVDASYAD   D+RSV+G+AT VGG VVSH S TQ     SS ++EYIAAGEGV+EALFVR VLSF+APETSGS+IKVLEDN+GA+AL+QNPLSS R+KHIDVR+HFI  LFRSG ISV+ V T EQHAD+LTKALSR   +YHR+ LMNLPE
Sbjct:  235 YVDASYADTE-DKRSVTGMATTVGGTVVSHGSKTQSILSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIHGLFRSGDISVKFVPTTEQHADLLTKALSRANLQYHRRKLMNLPE 386          
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5KCR8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR8_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 3.080e-61
Identity = 101/152 (66.45%), Postives = 122/152 (80.26%), Query Frame = 2
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQP---NSSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLP 448
            +VD+SYAD   DRRS +G+A  VGG VV   + TQP    S+ ++EYIAAGEGV+EALFVR VLSFIAPETSG+TI+V EDNEGA+AL+QNP SS+RSKHIDVRF FIREL ++G I+ +++ TEEQHAD+LTK L R    YHRKALMNLP
Sbjct:   33 FVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNPFSSTRSKHIDVRFPFIRELVKAGKITADYISTEEQHADMLTKVLGRGKLEYHRKALMNLP 184          
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 5.940e-61
Identity = 104/151 (68.87%), Postives = 124/151 (82.12%), Query Frame = 2
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQP---NSSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNL 445
            +VD+SYAD   DRRS +G+A  VGG VV   + TQP    S+ ++EYIAAGEGV+EALFVR VLSFIAPETSG+TI+VLEDNEGA+AL+QNP SS+RSKHIDVRFHFIRELF++G I+ ++V TEEQHAD+LTK L R    YHRKALMNL
Sbjct:  261 FVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVLEDNEGALALVQNPFSSARSKHIDVRFHFIRELFKAGKITADYVSTEEQHADMLTKVLGRGKLEYHRKALMNL 411          
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5JFV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV7_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 1.220e-60
Identity = 103/152 (67.76%), Postives = 124/152 (81.58%), Query Frame = 2
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQ---PNSSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLP 448
            +VDASYAD+  DRRS +G+A  VGG VV   +  Q     S++++EY+AAGEGVREALFVR VLSFIAPETS + IKVLEDN+GA+ALI+NP SS+RSKHIDVRFH+IRELF+SG I+ E+V T EQHAD+LTK L R+ F YHRKALMNLP
Sbjct:  111 FVDASYADNEVDRRSTTGLAVTVGGTVVCASTKAQRVSAQSTSEAEYMAAGEGVREALFVRGVLSFIAPETSEAKIKVLEDNKGALALIENPFSSARSKHIDVRFHYIRELFKSGKITAEYVPTGEQHADMLTKVLGREKFEYHRKALMNLP 262          
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 2.390e-60
Identity = 103/152 (67.76%), Postives = 125/152 (82.24%), Query Frame = 2
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQP---NSSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLP 448
            +VDASYAD+  DRRS +G+A  VGG VV   + TQP    S++++EY+AAGEGV+EALFVR VLSFIAPETSG+ IKVLEDN+GA+A+ +NP SS+RSKHIDVRFHFIRELF+SG I+ E+V T EQHAD+LTK L R+   YHRKALMNLP
Sbjct:  221 FVDASYADNEVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTSEAEYMAAGEGVKEALFVRGVLSFIAPETSGAKIKVLEDNKGALAMFENPFSSARSKHIDVRFHFIRELFKSGKITAEYVPTGEQHADMLTKVLGREKSEYHRKALMNLP 372          
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 4.660e-60
Identity = 112/160 (70.00%), Postives = 129/160 (80.62%), Query Frame = 2
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPN---SSADSEYIAAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE*ATVFPS 472
            YVDASYAD   DRRSVSG+AT VGG V+SH S TQ     SS ++EYIAAGEGV+EALFVR VLSFIAPETSGS+I+VLEDN+GAMAL+QNPLSS+RSKHIDVR+HFIR LFRSG IS++ V T EQHAD+LTKALS+   +YHR+ LMN    A    S
Sbjct:  358 YVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNFAGVAAAVSS 516          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1322.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KR64_9PHAE1.340e-6368.42Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L589_9PHAE1.470e-6373.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGX6_9PHAE6.660e-6273.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K6_9PHAE1.010e-6171.05Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGI0_9PHAE1.500e-6172.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCR8_9PHAE3.080e-6166.45Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCN6_9PHAE5.940e-6168.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFV7_9PHAE1.220e-6067.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWY8_9PHAE2.390e-6067.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCG0_9PHAE4.660e-6070.00Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1322contigP-littoralis_Contig1322:24711..25200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo133508
PFAMsRVT_2,Retrotran_gag_2,rve
Model size490
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.98e-20
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size390
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789606.7552686-UTR-P-littoralis_Contig1322:24710..247741680789606.7552686-UTR-P-littoralis_Contig1322:24710..24774Pylaiella littoralis U1_48UTRP-littoralis_Contig1322 24711..24774 +
1680789606.7766793-UTR-P-littoralis_Contig1322:25164..252001680789606.7766793-UTR-P-littoralis_Contig1322:25164..25200Pylaiella littoralis U1_48UTRP-littoralis_Contig1322 25165..25200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789606.7657266-CDS-P-littoralis_Contig1322:24774..251641680789606.7657266-CDS-P-littoralis_Contig1322:24774..25164Pylaiella littoralis U1_48CDSP-littoralis_Contig1322 24775..25164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1322.3.1prot_P-littoralis_Contig1322.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1322 24775..25164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1322.3.1

>prot_P-littoralis_Contig1322.3.1 ID=prot_P-littoralis_Contig1322.3.1|Name=mRNA_P-littoralis_Contig1322.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
MVGGAVVSHKSSTQPNSSADSEYIAAGEGVREALFVRHVLSFIAPETSGS
TIKVLEDNEGAMALIQNPLSSSRSKHIDVRFHFIRELFRSGVISVEHVRT
EEQHADVLTKALSRDLFRYHRKALMNLPE*
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mRNA from alignment at P-littoralis_Contig1322:24711..25200+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1322.3.1 ID=mRNA_P-littoralis_Contig1322.3.1|Name=mRNA_P-littoralis_Contig1322.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=490bp|location=Sequence derived from alignment at P-littoralis_Contig1322:24711..25200+ (Pylaiella littoralis U1_48)
GTACGTCGACGCGAGCTACGCCGACGACCCGGCTGATAGACGTTCGGTCT CCGGGATAGCAACCATGGTCGGTGGGGCTGTTGTTAGCCACAAAAGTTCA ACGCAGCCGAACTCCTCAGCAGATTCAGAGTACATTGCGGCTGGGGAGGG CGTGAGAGAAGCGTTGTTTGTGCGGCATGTGCTTTCGTTTATTGCGCCGG AGACGAGTGGTAGCACAATCAAGGTCCTTGAGGACAACGAGGGGGCGATG GCGCTGATTCAAAACCCTCTCAGCTCTAGCCGTAGCAAACACATAGACGT GCGCTTCCATTTTATTCGGGAGTTGTTCAGATCGGGGGTCATCTCGGTCG AGCACGTCAGGACGGAGGAACAGCACGCCGACGTTCTCACCAAGGCGCTG AGCCGGGACTTGTTCCGGTACCACCGGAAAGCATTGATGAATTTGCCGGA GTAGGCGACTGTTTTCCCGTCTTTGTTTTGAGCACAGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1322:24711..25200+

>mRNA_P-littoralis_Contig1322.3.1 ID=mRNA_P-littoralis_Contig1322.3.1|Name=mRNA_P-littoralis_Contig1322.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig1322:24711..25200+ (Pylaiella littoralis U1_48)
ATGGTCGGTGGGGCTGTTGTTAGCCACAAAAGTTCAACGCAGCCGAACTC
CTCAGCAGATTCAGAGTACATTGCGGCTGGGGAGGGCGTGAGAGAAGCGT
TGTTTGTGCGGCATGTGCTTTCGTTTATTGCGCCGGAGACGAGTGGTAGC
ACAATCAAGGTCCTTGAGGACAACGAGGGGGCGATGGCGCTGATTCAAAA
CCCTCTCAGCTCTAGCCGTAGCAAACACATAGACGTGCGCTTCCATTTTA
TTCGGGAGTTGTTCAGATCGGGGGTCATCTCGGTCGAGCACGTCAGGACG
GAGGAACAGCACGCCGACGTTCTCACCAAGGCGCTGAGCCGGGACTTGTT
CCGGTACCACCGGAAAGCATTGATGAATTTGCCGGAGTAG
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