mRNA_P-littoralis_Contig132.49.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig132.49.1 vs. uniprot
Match: A0A6H5JS69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS69_9PHAE) HSP 1 Score: 457 bits (1175), Expect = 9.490e-161 Identity = 229/240 (95.42%), Postives = 233/240 (97.08%), Query Frame = 1
Query: 4 MPWEDDNALADDQANLRFLERVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYGGLLRRPMLVDATAQALLNEANSTDGGTRGSTIKTCANNACYFNAVALGGVGAKYKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGFHCTLQAYSAK*VEGAWRLGCSTPEVLTERVARVLYLLAVREVAGEFSDSQRAAIPWTAQAFGVKMRCFHPGGSMKDVE 723
MPWEDDNALADDQANLRFLERVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGY GLLRRPMLVDATAQALLNEA+S DGGTRGSTIKTCANNACYFNAVALGG GA+YKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGF+CTLQAYSAK VEGAWRLGCS PEVLTE VARVLYLLAVREVAGEFSDSQ+AAIPW AQAFGVKMRCFHPGGSMKDVE
Sbjct: 1 MPWEDDNALADDQANLRFLERVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRGSTIKTCANNACYFNAVALGGFGARYKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGFYCTLQAYSAKEVEGAWRLGCSKPEVLTESVARVLYLLAVREVAGEFSDSQQAAIPWIAQAFGVKMRCFHPGGSMKDVE 240
BLAST of mRNA_P-littoralis_Contig132.49.1 vs. uniprot
Match: A0A6H5JIG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG7_9PHAE) HSP 1 Score: 337 bits (865), Expect = 8.360e-112 Identity = 172/233 (73.82%), Postives = 190/233 (81.55%), Query Frame = 1
Query: 25 ALADDQANLRFLERVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYGGLLRRPMLVDATAQALLNEANSTDGGTRGSTIKTCANNACYFNAVALGGVGAKYKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGFHCTLQAYSAK*VEGAWRLGCSTPEVLTERVARVLYLLAVREVAGEFSDSQRAAIPWTAQAFGVKMRCFHPGGSMKDVE 723
A AD QAN+RFLER+RESID VLS GS+ DGV L AC +I++A+SFK VL S+DTDVILPGY GLLRRPM VD TA+ LLN DGG RG +K N ACYFNAV LG G K TPDEAL LSLSVRVAVIRAA+VH + FISGP YGGF+CTLQAYSAK V+ AW LGC TPEVLTE V+RVLYLLAVREVAGEFSDSQ+AA+PWTAQAFG+KMRCFHPGGSMK VE
Sbjct: 2 AFADQQANVRFLERMRESIDGVLSDGSMADGVELEACLGIIQHAKSFKDVLCSEDTDVILPGYEGLLRRPMRVDRTAEDLLNGGEGADGGGRGVPVKVRGNGACYFNAVPLGIFGTKCNTPDEALGLSLSVRVAVIRAAIVHFEEFISGPEYGGFYCTLQAYSAKEVKAAWSLGCDTPEVLTESVSRVLYLLAVREVAGEFSDSQQAAMPWTAQAFGMKMRCFHPGGSMKHVE 234
BLAST of mRNA_P-littoralis_Contig132.49.1 vs. uniprot
Match: A0A6H5KUZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ3_9PHAE) HSP 1 Score: 291 bits (745), Expect = 2.160e-91 Identity = 146/156 (93.59%), Postives = 151/156 (96.79%), Query Frame = 1
Query: 235 MLVDATAQALLNEANSTDGGTRGSTIKTCANNACYFNAVALGGVGAKYKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGFHCTLQAYSAK*VEGAWRLGCSTPEVLTERVARVLYLLAVREVAGEFSDSQRAAIPWTAQAFGVKMRCFHPG 702
MLVDATAQALLNEA+S DGGTRGSTIKTCANNACYFNAVALGGVGA+YKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGF+CTLQAYSAK VEGAWRLG STPEVLTE VARVLYLLAVREVA EFSDSQ+AAIPWTAQAFGV+MRCFHPG
Sbjct: 1 MLVDATAQALLNEADSADGGTRGSTIKTCANNACYFNAVALGGVGARYKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGFYCTLQAYSAKEVEGAWRLGYSTPEVLTESVARVLYLLAVREVACEFSDSQQAAIPWTAQAFGVEMRCFHPG 156
BLAST of mRNA_P-littoralis_Contig132.49.1 vs. uniprot
Match: A0A6H5JM74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM74_9PHAE) HSP 1 Score: 173 bits (438), Expect = 8.400e-51 Identity = 99/163 (60.74%), Postives = 101/163 (61.96%), Query Frame = 1
Query: 235 MLVDATAQALLNEANSTDGGTRGSTIKTCANNACYFNAVALGGVGAKYKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGFHCTLQAYSAK*VEGAWRLGCSTPEVLTERVARVLYLLAVREVAGEFSDSQRAAIPWTAQAFGVKMRCFHPGGSMKDVE 723
MLVDATAQALLNEA+S DGGTRGSTIKTCANNACYFNAVALGG GA STPEVLTE VARVLYLLAVREVAGEFSDSQ+AAIPWTAQAFGVKMRCFHPGGSMKDVE
Sbjct: 1 MLVDATAQALLNEADSADGGTRGSTIKTCANNACYFNAVALGGFGA-----------------------------------------------------------STPEVLTESVARVLYLLAVREVAGEFSDSQQAAIPWTAQAFGVKMRCFHPGGSMKDVE 104
BLAST of mRNA_P-littoralis_Contig132.49.1 vs. uniprot
Match: A0A6H5KB14_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB14_9PHAE) HSP 1 Score: 141 bits (356), Expect = 2.330e-39 Identity = 71/101 (70.30%), Postives = 84/101 (83.17%), Query Frame = 1
Query: 1 GMPWEDDNALADDQANLRFLERVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYGGLLRRPMLVDATAQALLNEANSTDGGTRG 303
GM W+D+NA ADDQANL FLE +RE ID +LSSG++EDG+ALGACS+++E+A SFK LGS DT VILPGY GLLRRPM VD TAQALLN A+S DGG +G
Sbjct: 16 GMSWKDNNAFADDQANLLFLESMRERIDAMLSSGTMEDGLALGACSDVVEHALSFKLDLGSGDTVVILPGYEGLLRRPMCVDVTAQALLNGADSADGGGKG 116
BLAST of mRNA_P-littoralis_Contig132.49.1 vs. uniprot
Match: D8LFN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN7_ECTSI) HSP 1 Score: 107 bits (267), Expect = 2.540e-26 Identity = 59/95 (62.11%), Postives = 70/95 (73.68%), Query Frame = 1
Query: 19 DNALADDQANLRFLERVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYGGLLRRPMLVDATAQALLNEANSTDGGTRG 303
D A+ D QAN+ FLE +RESID VLS S+ D VALGA MIE+A+SFK VL S+DTDVIL GY GL+RRP+ V TA+A LN +S DGG RG
Sbjct: 4 DMAVVDHQANVCFLESMRESIDEVLSGSSMADDVALGAHLGMIEHAKSFKDVLCSKDTDVILSGYEGLVRRPIRVGRTAEAFLNGVDSADGGGRG 98 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig132.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig132.49.1 >prot_P-littoralis_Contig132.49.1 ID=prot_P-littoralis_Contig132.49.1|Name=mRNA_P-littoralis_Contig132.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=173bp MPWEDDNALADDQANLRFLERVRESIDVVLSSGSVEDGVALGACSEMIEYback to top mRNA from alignment at P-littoralis_Contig132:188051..189530- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig132.49.1 ID=mRNA_P-littoralis_Contig132.49.1|Name=mRNA_P-littoralis_Contig132.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1480bp|location=Sequence derived from alignment at P-littoralis_Contig132:188051..189530- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig132:188051..189530- >mRNA_P-littoralis_Contig132.49.1 ID=mRNA_P-littoralis_Contig132.49.1|Name=mRNA_P-littoralis_Contig132.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=519bp|location=Sequence derived from alignment at P-littoralis_Contig132:188051..189530- (Pylaiella littoralis U1_48)back to top |