mRNA_P-littoralis_Contig132.49.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig132.49.1
Unique NamemRNA_P-littoralis_Contig132.49.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig132.49.1 vs. uniprot
Match: A0A6H5JS69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS69_9PHAE)

HSP 1 Score: 457 bits (1175), Expect = 9.490e-161
Identity = 229/240 (95.42%), Postives = 233/240 (97.08%), Query Frame = 1
Query:    4 MPWEDDNALADDQANLRFLERVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYGGLLRRPMLVDATAQALLNEANSTDGGTRGSTIKTCANNACYFNAVALGGVGAKYKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGFHCTLQAYSAK*VEGAWRLGCSTPEVLTERVARVLYLLAVREVAGEFSDSQRAAIPWTAQAFGVKMRCFHPGGSMKDVE 723
            MPWEDDNALADDQANLRFLERVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGY GLLRRPMLVDATAQALLNEA+S DGGTRGSTIKTCANNACYFNAVALGG GA+YKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGF+CTLQAYSAK VEGAWRLGCS PEVLTE VARVLYLLAVREVAGEFSDSQ+AAIPW AQAFGVKMRCFHPGGSMKDVE
Sbjct:    1 MPWEDDNALADDQANLRFLERVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRGSTIKTCANNACYFNAVALGGFGARYKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGFYCTLQAYSAKEVEGAWRLGCSKPEVLTESVARVLYLLAVREVAGEFSDSQQAAIPWIAQAFGVKMRCFHPGGSMKDVE 240          
BLAST of mRNA_P-littoralis_Contig132.49.1 vs. uniprot
Match: A0A6H5JIG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG7_9PHAE)

HSP 1 Score: 337 bits (865), Expect = 8.360e-112
Identity = 172/233 (73.82%), Postives = 190/233 (81.55%), Query Frame = 1
Query:   25 ALADDQANLRFLERVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYGGLLRRPMLVDATAQALLNEANSTDGGTRGSTIKTCANNACYFNAVALGGVGAKYKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGFHCTLQAYSAK*VEGAWRLGCSTPEVLTERVARVLYLLAVREVAGEFSDSQRAAIPWTAQAFGVKMRCFHPGGSMKDVE 723
            A AD QAN+RFLER+RESID VLS GS+ DGV L AC  +I++A+SFK VL S+DTDVILPGY GLLRRPM VD TA+ LLN     DGG RG  +K   N ACYFNAV LG  G K  TPDEAL LSLSVRVAVIRAA+VH + FISGP YGGF+CTLQAYSAK V+ AW LGC TPEVLTE V+RVLYLLAVREVAGEFSDSQ+AA+PWTAQAFG+KMRCFHPGGSMK VE
Sbjct:    2 AFADQQANVRFLERMRESIDGVLSDGSMADGVELEACLGIIQHAKSFKDVLCSEDTDVILPGYEGLLRRPMRVDRTAEDLLNGGEGADGGGRGVPVKVRGNGACYFNAVPLGIFGTKCNTPDEALGLSLSVRVAVIRAAIVHFEEFISGPEYGGFYCTLQAYSAKEVKAAWSLGCDTPEVLTESVSRVLYLLAVREVAGEFSDSQQAAMPWTAQAFGMKMRCFHPGGSMKHVE 234          
BLAST of mRNA_P-littoralis_Contig132.49.1 vs. uniprot
Match: A0A6H5KUZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ3_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 2.160e-91
Identity = 146/156 (93.59%), Postives = 151/156 (96.79%), Query Frame = 1
Query:  235 MLVDATAQALLNEANSTDGGTRGSTIKTCANNACYFNAVALGGVGAKYKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGFHCTLQAYSAK*VEGAWRLGCSTPEVLTERVARVLYLLAVREVAGEFSDSQRAAIPWTAQAFGVKMRCFHPG 702
            MLVDATAQALLNEA+S DGGTRGSTIKTCANNACYFNAVALGGVGA+YKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGF+CTLQAYSAK VEGAWRLG STPEVLTE VARVLYLLAVREVA EFSDSQ+AAIPWTAQAFGV+MRCFHPG
Sbjct:    1 MLVDATAQALLNEADSADGGTRGSTIKTCANNACYFNAVALGGVGARYKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGFYCTLQAYSAKEVEGAWRLGYSTPEVLTESVARVLYLLAVREVACEFSDSQQAAIPWTAQAFGVEMRCFHPG 156          
BLAST of mRNA_P-littoralis_Contig132.49.1 vs. uniprot
Match: A0A6H5JM74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM74_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 8.400e-51
Identity = 99/163 (60.74%), Postives = 101/163 (61.96%), Query Frame = 1
Query:  235 MLVDATAQALLNEANSTDGGTRGSTIKTCANNACYFNAVALGGVGAKYKTPDEALELSLSVRVAVIRAALVHLQTFISGPGYGGFHCTLQAYSAK*VEGAWRLGCSTPEVLTERVARVLYLLAVREVAGEFSDSQRAAIPWTAQAFGVKMRCFHPGGSMKDVE 723
            MLVDATAQALLNEA+S DGGTRGSTIKTCANNACYFNAVALGG GA                                                           STPEVLTE VARVLYLLAVREVAGEFSDSQ+AAIPWTAQAFGVKMRCFHPGGSMKDVE
Sbjct:    1 MLVDATAQALLNEADSADGGTRGSTIKTCANNACYFNAVALGGFGA-----------------------------------------------------------STPEVLTESVARVLYLLAVREVAGEFSDSQQAAIPWTAQAFGVKMRCFHPGGSMKDVE 104          
BLAST of mRNA_P-littoralis_Contig132.49.1 vs. uniprot
Match: A0A6H5KB14_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB14_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.330e-39
Identity = 71/101 (70.30%), Postives = 84/101 (83.17%), Query Frame = 1
Query:    1 GMPWEDDNALADDQANLRFLERVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYGGLLRRPMLVDATAQALLNEANSTDGGTRG 303
            GM W+D+NA ADDQANL FLE +RE ID +LSSG++EDG+ALGACS+++E+A SFK  LGS DT VILPGY GLLRRPM VD TAQALLN A+S DGG +G
Sbjct:   16 GMSWKDNNAFADDQANLLFLESMRERIDAMLSSGTMEDGLALGACSDVVEHALSFKLDLGSGDTVVILPGYEGLLRRPMCVDVTAQALLNGADSADGGGKG 116          
BLAST of mRNA_P-littoralis_Contig132.49.1 vs. uniprot
Match: D8LFN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN7_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 2.540e-26
Identity = 59/95 (62.11%), Postives = 70/95 (73.68%), Query Frame = 1
Query:   19 DNALADDQANLRFLERVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYGGLLRRPMLVDATAQALLNEANSTDGGTRG 303
            D A+ D QAN+ FLE +RESID VLS  S+ D VALGA   MIE+A+SFK VL S+DTDVIL GY GL+RRP+ V  TA+A LN  +S DGG RG
Sbjct:    4 DMAVVDHQANVCFLESMRESIDEVLSGSSMADDVALGAHLGMIEHAKSFKDVLCSKDTDVILSGYEGLVRRPIRVGRTAEAFLNGVDSADGGGRG 98          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig132.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JS69_9PHAE9.490e-16195.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIG7_9PHAE8.360e-11273.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUZ3_9PHAE2.160e-9193.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM74_9PHAE8.400e-5160.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB14_9PHAE2.330e-3970.30Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LFN7_ECTSI2.540e-2662.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig132contigP-littoralis_Contig132:188051..189530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size725
Hectar predicted targeting categoryother localisation
Exons3
Cds size519
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789604.020818-UTR-P-littoralis_Contig132:188050..1880751680789604.020818-UTR-P-littoralis_Contig132:188050..188075Pylaiella littoralis U1_48UTRP-littoralis_Contig132 188051..188075 -
1680789604.0293512-UTR-P-littoralis_Contig132:188363..1885411680789604.0293512-UTR-P-littoralis_Contig132:188363..188541Pylaiella littoralis U1_48UTRP-littoralis_Contig132 188364..188541 -
1680789604.0621977-UTR-P-littoralis_Contig132:189527..1895301680789604.0621977-UTR-P-littoralis_Contig132:189527..189530Pylaiella littoralis U1_48UTRP-littoralis_Contig132 189528..189530 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789604.0376883-CDS-P-littoralis_Contig132:188541..1888561680789604.0376883-CDS-P-littoralis_Contig132:188541..188856Pylaiella littoralis U1_48CDSP-littoralis_Contig132 188542..188856 -
1680789604.0481102-CDS-P-littoralis_Contig132:189323..1895271680789604.0481102-CDS-P-littoralis_Contig132:189323..189527Pylaiella littoralis U1_48CDSP-littoralis_Contig132 189324..189527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig132.49.1prot_P-littoralis_Contig132.49.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig132 188542..189527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig132.49.1

>prot_P-littoralis_Contig132.49.1 ID=prot_P-littoralis_Contig132.49.1|Name=mRNA_P-littoralis_Contig132.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=173bp
MPWEDDNALADDQANLRFLERVRESIDVVLSSGSVEDGVALGACSEMIEY
ARSFKHVLGSQDTDVILPGYGGLLRRPMLVDATAQALLNEANSTDGGTRG
STIKTCANNACYFNAVALGGVGAKYKTPDEALELSLSVRVAVIRAALVHL
QTFISGPGYGGFHCTLQAYSAK*
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mRNA from alignment at P-littoralis_Contig132:188051..189530-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig132.49.1 ID=mRNA_P-littoralis_Contig132.49.1|Name=mRNA_P-littoralis_Contig132.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1480bp|location=Sequence derived from alignment at P-littoralis_Contig132:188051..189530- (Pylaiella littoralis U1_48)
GGAATGCCGTGGGAGGATGACAACGCGCTCGCGGATGACCAAGCGAACCT CCGTTTCTTGGAGCGCGTGAGGGAAAGTATCGATGTCGTGCTCTCGAGCG GTAGCGTGGAAGACGGTGTGGCACTCGGTGCATGCTCGGAGATGATCGAA TACGCTAGGAGCTTCAAGCACGTGTTGGGCAGCCAAGATACGGACGTCAT CCTACCAGTAAGAGCACCAGACGCACGCACGGCATTATCCAGCTTGGGGC GTGGTTTTGGCACGGCCGACCTCGGCATAATACCGTAATCTTCGGGGTCG TACACCCCCCGTGGTGTTCATGGAAAAAATAGAGTCCCCGTCCCGTTTGT TCTATTTTCCCCCGAGTAAGCGCAAGGAAAAAACCTAGAGGCAAAGTTCA TCCCCTCCCAGGGTTGGCGGCAACGACGACCACGGTGTTTCATGTCTTGG TGTAGCGCGCAATGTTTCGAGCACGACGTGCCACAGTCATCGCTGCGAAA CATTAGGTGGGTATACTTCCGCGAAGGAACTGGTCGCGTTTCATGCTTCA TCAAAACCCAGTGTTTCGGGTGAGCAATTTTTGTGCACCCATGCATCGTG CACGTGCTATAGGCACACCATGGGAGCAAAATGATGCCACCGGAAACACA ATCGCCTCCGGTCGTTTTTTGCAGGGATACGGAGGATTGTTGAGGCGACC CATGCTCGTGGATGCAACGGCTCAAGCCCTGCTCAACGAGGCGAACAGCA CGGACGGTGGGACCAGGGGGTCGACCATAAAAACCTGCGCCAACAATGCT TGCTATTTCAACGCCGTTGCGTTGGGGGGGGTTGGTGCCAAGTACAAAAC CCCTGACGAAGCGCTGGAGTTGTCTCTATCGGTGCGTGTAGCCGTAATCC GGGCGGCCCTAGTACATTTGCAGACATTCATAAGCGGTCCTGGGTACGGT GGCTTCCACTGTACGCTGCAAGCGTATTCCGCGAAATAAGTCGAGGGCGC TTGGAGGCTCGGGTGCAGCACTCCTGAGGTCCTGACAGAGAGGGTAGCGC GAGTTCTGTACCTGCTTGCCGTGCGAGAGGTCGCTGGCGAGTTCAGCGAC AGCCAACGGGCGGCCATACCGTGGACAGCACAAGCGTTTGGGGTGAAGAT GCGGTGCTTTCACCCAGGTGAGTTGGTTTGTATTCAGGATGATTTCCCCA TAAGATAGAAGACGGCAAACTTGCAAAGCTAAATCGGTATGAGGCCTCCC GCTCTCGGTAGGTCTCCACCTGTCATGGTTAACCCGGACAACCCCCTTCC ACCACCCCCAGGACAGGATTATCTCTTGTGGTACAGTGACGCTTCGGATA AGTGCTTGTCACCTTCATTTAGTATCCTTATACTGTATCCCAATAGCTTG TGCAAATGAGGGCGATCCTTCGATAACGTTGTTCACACGTTATGTCACTG GGCAGGTGGGTCGATGAAGGATGTTGAGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig132:188051..189530-

>mRNA_P-littoralis_Contig132.49.1 ID=mRNA_P-littoralis_Contig132.49.1|Name=mRNA_P-littoralis_Contig132.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=519bp|location=Sequence derived from alignment at P-littoralis_Contig132:188051..189530- (Pylaiella littoralis U1_48)
ATGCCGTGGGAGGATGACAACGCGCTCGCGGATGACCAAGCGAACCTCCG
TTTCTTGGAGCGCGTGAGGGAAAGTATCGATGTCGTGCTCTCGAGCGGTA
GCGTGGAAGACGGTGTGGCACTCGGTGCATGCTCGGAGATGATCGAATAC
GCTAGGAGCTTCAAGCACGTGTTGGGCAGCCAAGATACGGACGTCATCCT
ACCAGGATACGGAGGATTGTTGAGGCGACCCATGCTCGTGGATGCAACGG
CTCAAGCCCTGCTCAACGAGGCGAACAGCACGGACGGTGGGACCAGGGGG
TCGACCATAAAAACCTGCGCCAACAATGCTTGCTATTTCAACGCCGTTGC
GTTGGGGGGGGTTGGTGCCAAGTACAAAACCCCTGACGAAGCGCTGGAGT
TGTCTCTATCGGTGCGTGTAGCCGTAATCCGGGCGGCCCTAGTACATTTG
CAGACATTCATAAGCGGTCCTGGGTACGGTGGCTTCCACTGTACGCTGCA
AGCGTATTCCGCGAAATAA
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