mRNA_P-littoralis_Contig1301.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1301.1.1
Unique NamemRNA_P-littoralis_Contig1301.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1301.1.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 2.830e-5
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:  439 CTKQPRYGVAGTKTAEFCSGHAKDGMVDVLSKRC 540
            CTK+P YGVAG+K  EFCS HA+DGMV+V +KRC
Sbjct:    9 CTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 42
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BLAST of mRNA_P-littoralis_Contig1301.1.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.630e-5
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:  439 CTKQPRYGVAGTKTAEFCSGHAKDGMVDVLSKRC 540
            CTK+P YGVAG+K  EFCS HA+DGMV+V +KRC
Sbjct:   69 CTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 102
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1301.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI73_ECTSI2.830e-570.59EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE3.630e-570.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1301contigP-littoralis_Contig1301:1194..2532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHY3
Model size1110
Max annot lvl2880.D7FHY3|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000805
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size1110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789594.1136558-CDS-P-littoralis_Contig1301:1193..18651680789594.1136558-CDS-P-littoralis_Contig1301:1193..1865Pylaiella littoralis U1_48CDSP-littoralis_Contig1301 1194..1865 -
1680789594.1248934-CDS-P-littoralis_Contig1301:2094..25321680789594.1248934-CDS-P-littoralis_Contig1301:2094..2532Pylaiella littoralis U1_48CDSP-littoralis_Contig1301 2095..2532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1301.1.1prot_P-littoralis_Contig1301.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1301 1194..2532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1301.1.1

>prot_P-littoralis_Contig1301.1.1 ID=prot_P-littoralis_Contig1301.1.1|Name=mRNA_P-littoralis_Contig1301.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=370bp
PEVWRGRYQDGGVLLWTRQGWNGGRPPQAVCPLHQEAEVWRGRYENGGVL
LWTRQGWNGERPQKAVCPPRLHQEAEVWRGRYEDGGVLLWTRQGWNGGRL
PQAVCPPRLHQEAEVWCGRYEDGGVLLWTRHGWNGGRPQQAVCPPLCTKQ
PRYGVAGTKTAEFCSGHAKDGMVDVLSKRCAHLGCTKRPSYGVAGTQTAE
FCSGHAKDGMVRVSDSRNPCSVRGRSGGARGCGGAEMDGCTARRSGAGGK
KRRRSLADTRQAEPSSESSSRSGRADSKRSRQATVNTPVSPPPSIGGTAE
YETHAAPDANVSLPEPDDAAVKTEVATVSSKAVAIEALPAVETTAGESAT
SVGYNLCAEPDGSVKTEVGI
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mRNA from alignment at P-littoralis_Contig1301:1194..2532-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1301.1.1 ID=mRNA_P-littoralis_Contig1301.1.1|Name=mRNA_P-littoralis_Contig1301.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1339bp|location=Sequence derived from alignment at P-littoralis_Contig1301:1194..2532- (Pylaiella littoralis U1_48)
CCCGAGGTATGGCGTGGCAGGTACCAAGACGGCGGAGTTCTGCTCTGGAC
ACGCCAAGGATGGAATGGTGGACGTCCTCCGCAAGCGGTGTGCCCACTGC
ACCAAGAAGCCGAGGTATGGCGTGGCAGGTACGAAAACGGCGGAGTTCTG
CTGTGGACACGCCAAGGATGGAATGGTGAACGTCCTCAAAAAGCAGTGTG
CCCACCGCGGCTGCACCAAGAAGCCGAGGTATGGCGTGGCAGGTACGAAG
ACGGCGGAGTTCTGCTCTGGACACGCCAAGGATGGAATGGTGGACGTCTT
CCACAAGCGGTGTGCCCACCGCGGCTGCACCAAGAAGCCGAGGTATGGTG
TGGCAGGTACGAAGACGGCGGAGTTCTGCTCTGGACACGCCACGGATGGA
ATGGTGGACGTCCTCAGCAAGCGGTGTGCCCACCGTTGCTGCACCAAGTA
CCCGAGCTATGGTGTGGCAGGTACGAAAACGGCGGAGTTCTGCTGTGGAC
ACGCCAAGGATGGAATGGTGAACGTCCTCAAAAAGCAGCGTGCCCACCGC
GGCTGCACCAAGAAGCCGACCTATGGCGTGGCAGGTACGAAGACGGCGGA
GTTCTGCTCTGGACACGCCAAGGATGGAATGGTGGACGTCTTCCACAAGC
GGTGTGCCCACCGTTGCTGCACCAAGCAGCCGAGGTATGGTGTGGCAGGT
ACCAAGACGGCGGAGTTCTGCTCTGGACACGCCAAGGATGGAATGGTGGA
CGTCCTCAGCAAGCGGTGTGCCCACCTTGGCTGCACCAAGCGCCCGAGCT
ATGGAGTCGCAGGTACCCAGACGGCGGAGTTCTGCTCTGGACATGCCAAG
GATGGAATGGTGCGTGTTAGTGATTCAAGGAACCCGTGTAGTGTCCGCGG
ACGAAGCGGGGGCGCGCGAGGGTGCGGTGGTGCGGAGATGGATGGCTGCA
CCGCTCGCCGTTCTGGTGCTGGTGGAAAGAAGAGGCGACGCTCTCTAGCA
GACACCAGGCAGGCGGAACCATCCAGCGAAAGCAGCAGCAGGAGCGGCAG
GGCGGACAGTAAGCGATCCCGCCAGGCCACCGTCAATACACCTGTGAGTC
CGCCGCCCTCAATCGGTGGAACAGCGGAATATGAAACCCACGCCGCCCCA
GATGCAAATGTTTCCCTTCCCGAGCCAGATGACGCTGCAGTGAAGACGGA
AGTGGCGACGGTTTCTTCGAAGGCGGTCGCCATAGAGGCTTTGCCAGCAG
TGGAGACTACAGCAGGAGAATCGGCCACGTCCGTGGGGTATAATCTGTGT
GCTGAACCAGACGGCTCCGTGAAGACGGAAGTTGGGATC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1301:1194..2532-

>mRNA_P-littoralis_Contig1301.1.1 ID=mRNA_P-littoralis_Contig1301.1.1|Name=mRNA_P-littoralis_Contig1301.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1110bp|location=Sequence derived from alignment at P-littoralis_Contig1301:1194..2532- (Pylaiella littoralis U1_48)
CCCGAGGTATGGCGTGGCAGGTACCAAGACGGCGGAGTTCTGCTCTGGAC
ACGCCAAGGATGGAATGGTGGACGTCCTCCGCAAGCGGTGTGCCCACTGC
ACCAAGAAGCCGAGGTATGGCGTGGCAGGTACGAAAACGGCGGAGTTCTG
CTGTGGACACGCCAAGGATGGAATGGTGAACGTCCTCAAAAAGCAGTGTG
CCCACCGCGGCTGCACCAAGAAGCCGAGGTATGGCGTGGCAGGTACGAAG
ACGGCGGAGTTCTGCTCTGGACACGCCAAGGATGGAATGGTGGACGTCTT
CCACAAGCGGTGTGCCCACCGCGGCTGCACCAAGAAGCCGAGGTATGGTG
TGGCAGGTACGAAGACGGCGGAGTTCTGCTCTGGACACGCCACGGATGGA
ATGGTGGACGTCCTCAGCAAGCGGTGTGCCCACCGTTGTGCACCAAGCAG
CCGAGGTATGGTGTGGCAGGTACCAAGACGGCGGAGTTCTGCTCTGGACA
CGCCAAGGATGGAATGGTGGACGTCCTCAGCAAGCGGTGTGCCCACCTTG
GCTGCACCAAGCGCCCGAGCTATGGAGTCGCAGGTACCCAGACGGCGGAG
TTCTGCTCTGGACATGCCAAGGATGGAATGGTGCGTGTTAGTGATTCAAG
GAACCCGTGTAGTGTCCGCGGACGAAGCGGGGGCGCGCGAGGGTGCGGTG
GTGCGGAGATGGATGGCTGCACCGCTCGCCGTTCTGGTGCTGGTGGAAAG
AAGAGGCGACGCTCTCTAGCAGACACCAGGCAGGCGGAACCATCCAGCGA
AAGCAGCAGCAGGAGCGGCAGGGCGGACAGTAAGCGATCCCGCCAGGCCA
CCGTCAATACACCTGTGAGTCCGCCGCCCTCAATCGGTGGAACAGCGGAA
TATGAAACCCACGCCGCCCCAGATGCAAATGTTTCCCTTCCCGAGCCAGA
TGACGCTGCAGTGAAGACGGAAGTGGCGACGGTTTCTTCGAAGGCGGTCG
CCATAGAGGCTTTGCCAGCAGTGGAGACTACAGCAGGAGAATCGGCCACG
TCCGTGGGGTATAATCTGTGTGCTGAACCAGACGGCTCCGTGAAGACGGA
AGTTGGGATC
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