mRNA_P-littoralis_Contig1300.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig1300.9.1
Unique Name	mRNA_P-littoralis_Contig1300.9.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig1300.9.1 vs. uniprot
Match: A0A6H5KIP6_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP6_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 5.420e-18
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 3

Query:   18 PKLGVGGVYDCGSNAMYHQEDLPPPAGAQMGVVYQCGRCGRLGHTPLICSAPRRFDGNCTSCHQYGHTSRDCVT 239
            P  G GG+YDCG NA+Y QE+   P GA +GVV+QC RCGR GH+   C+APRRF+GNCT+     H  R C T
Sbjct:  319 PTWGSGGLYDCGRNAVYPQEESASPQGALIGVVHQCVRCGRHGHSLGDCNAPRRFEGNCTAXXXXXHRRRMCCT 392

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BLAST of mRNA_P-littoralis_Contig1300.9.1 vs. uniprot
Match: A0A6H5L4A7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A7_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 5.780e-18
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 3

Query:   18 PKLGVGGVYDCGSNAMYHQEDLPPPAGAQMGVVYQCGRCGRLGHTPLICSAPRRFDGNCTSCHQYGHTSRDCVT 239
            P  G GG+YDCG NA+Y QE+   P GA +GVV+QC RCGR GH+   C+APRRF+GNCT+     H  R C T
Sbjct:  319 PTWGSGGLYDCGRNAVYPQEESASPQGALIGVVHQCVRCGRHGHSLGDCNAPRRFEGNCTAXXXXXHRRRMCCT 392

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BLAST of mRNA_P-littoralis_Contig1300.9.1 vs. uniprot
Match: A0A6H5KYI1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI1_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.070e-18
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 3

Query:   18 PKLGVGGVYDCGSNAMYHQEDLPPPAGAQMGVVYQCGRCGRLGHTPLICSAPRRFDGNCTSCHQYGHTSRDCVT 239
            P  G GG+YDCG NA+Y QE+   P GA +GVV+QC RCGR GH+   C+APRRF+GNCT+     H  R C T
Sbjct:  319 PTWGSGGLYDCGRNAVYPQEESASPQGALIGVVHQCVRCGRHGHSLGDCNAPRRFEGNCTAXXXXXHRRRMCCT 392

[Close]

BLAST of mRNA_P-littoralis_Contig1300.9.1 vs. uniprot
Match: A0A6H5JBM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBM3_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 9.740e-17
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 3

Query:   27 GVGGVYDCGSNAMYHQEDLPPPAGAQMGVVYQCGRCGRLGHTPLICSAPRRFDGNCTSCHQYGHTSRDCV 236
            GVGG+YDCG NA+YHQ + PPP GA MG V++C          + C+APRRF+G   +C QYGH  R+C 
Sbjct:  121 GVGGIYDCGCNAVYHQPESPPPPGAPMGTVHRCXXXXXXXXXAIDCAAPRRFEGTSGACDQYGHMWRNCA 190

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BLAST of mRNA_P-littoralis_Contig1300.9.1 vs. uniprot
Match: A0A6H5JBS7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS7_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 8.040e-16
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 3

Query:   27 GVGGVYDCGSNAMYHQEDLPPPAGAQMGVVYQCGRCGRLGHTPLICSAPRRFDG 188
            GVGG+YDCGSNA+YHQ +  PP GA MG V++CGRCGR  H  + C+APRRF+G
Sbjct:  363 GVGGIYDCGSNAVYHQPESLPPPGAPMGTVHRCGRCGRNDHHAIDCAAPRRFEG 416

[Close]

BLAST of mRNA_P-littoralis_Contig1300.9.1 vs. uniprot
Match: A0A6H5KYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB5_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.200e-15
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 3

Query:   27 GVGGVYDCGSNAMYHQEDLPPPAGAQMGVVYQCGRCGRLGHTPLICSAPRRFDG 188
            GVGG+YDCGSNA+YHQ +  PP GA MG V++CGRC R GH  + C+APRRF+G
Sbjct:  477 GVGGIYDCGSNAVYHQPESLPPPGAPMGTVHRCGRCERHGHHAIDCAAPRRFEG 530

[Close]

BLAST of mRNA_P-littoralis_Contig1300.9.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 9.790e-15
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 3

Query:   27 GVGGVYDCGSNAMYHQEDLPPPAGAQMGVVYQCGRCGRLGHTPLICSAPRRFDG 188
            GVGG+YDCGSNA+YHQ +  PP GA M  V++C RCGR GH  + C+APRRF+G
Sbjct:  233 GVGGIYDCGSNAVYHQPESLPPPGAPMSTVHRCCRCGRHGHHAIDCAAPRRFEG 286

[Close]

BLAST of mRNA_P-littoralis_Contig1300.9.1 vs. uniprot
Match: A0A6H5JU47_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU47_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 5.300e-13
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 3

Query:   27 GVGGVYDCGSNAMYHQEDLPPPAGAQMGVVYQCGRCGRLGHTPLICSAPRRFDG 188
            GVGG+YDCGSNA+YHQ    PP GA MG+V++CGR     H  + C+APRRF+G
Sbjct:  363 GVGGIYDCGSNAVYHQPKSLPPPGAPMGIVHRCGRXXXXXHHAIGCAAPRRFEG 416

[Close]

BLAST of mRNA_P-littoralis_Contig1300.9.1 vs. uniprot
Match: A0A6H5JN41_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN41_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.860e-11
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 3

Query:   27 GVGGVYDCGSNAMYHQEDLPPPAGAQMGVVYQCGRCGRLGHTPLICSAPRRFDG 188
            GVGGVYDCGSNA+ HQ +  PP G  MG V++CGR     H  + C+APRRF+G
Sbjct:  435 GVGGVYDCGSNAVSHQPESLPPPGTPMGTVHRCGRXXXXXHHAIDCAAPRRFEG 488

[Close]

BLAST of mRNA_P-littoralis_Contig1300.9.1 vs. uniprot
Match: A0A6H5JXN1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN1_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 4.280e-11
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 3

Query:   27 GVGGVYDCGSNAMYHQEDLPPPAGAQMGVVYQCGRCGRLGHTPLICSAPRRFDG 188
            GVGG YDCGSNA+YHQ +  PP GA MG V++CGR        + C+APRRF+G
Sbjct:  218 GVGGNYDCGSNAVYHQPESLPPPGAPMGTVHRCGRXXXXXXHAIDCAAPRRFEG 271

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig1300.9.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig1300.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13


Match Name	E-value	Identity	Description
A0A6H5KIP6_9PHAE	5.420e-18	55.41	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5L4A7_9PHAE	5.780e-18	55.41	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5KYI1_9PHAE	6.070e-18	55.41	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JBM3_9PHAE	9.740e-17	51.43	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JBS7_9PHAE	8.040e-16	64.81	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5KYB5_9PHAE	1.200e-15	64.81	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JV09_9PHAE	9.790e-15	62.96	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JU47_9PHAE	5.300e-13	59.26	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JN41_9PHAE	1.860e-11	57.41	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JXN1_9PHAE	4.280e-11	57.41	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig1300	contig	P-littoralis_Contig1300:30877..31636 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	760
Hectar predicted targeting category	other localisation
Exons	1
Cds size	465

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789594.0527005-UTR-P-littoralis_Contig1300:30876..31109	1680789594.0527005-UTR-P-littoralis_Contig1300:30876..31109	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig1300 30877..31109 -
1680789594.0804024-UTR-P-littoralis_Contig1300:31574..31636	1680789594.0804024-UTR-P-littoralis_Contig1300:31574..31636	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig1300 31575..31636 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789594.0713964-CDS-P-littoralis_Contig1300:31109..31574	1680789594.0713964-CDS-P-littoralis_Contig1300:31109..31574	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig1300 31110..31574 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig1300.9.1	prot_P-littoralis_Contig1300.9.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig1300 31110..31574 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig1300:30877..31636-
coding sequence from alignment at P-littoralis_Contig1300:30877..31636-

protein sequence of mRNA_P-littoralis_Contig1300.9.1

>prot_P-littoralis_Contig1300.9.1 ID=prot_P-littoralis_Contig1300.9.1|Name=mRNA_P-littoralis_Contig1300.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp
MYHQEDLPPPAGAQMGVVYQCGRCGRLGHTPLICSAPRRFDGNCTSCHQY
GHTSRDCVTNQGPGAVPPSVPLPQFSDAGGPDDGLQRSGMNDGADRMPLA
QRQLVYDDLPFDRGDGGGCASTTAADKMDLMERGVFRVQWYPNPRPGTNE
ARLS*

mRNA from alignment at P-littoralis_Contig1300:30877..31636-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig1300.9.1 ID=mRNA_P-littoralis_Contig1300.9.1|Name=mRNA_P-littoralis_Contig1300.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=760bp|location=Sequence derived from alignment at P-littoralis_Contig1300:30877..31636- (Pylaiella littoralis U1_48)
AGTCACATTTTAGGCACCCAAAGTTGGGGGTTGGCGGGGTGTACGACTGC
GGTAGTAACGCGATGTACCACCAGGAGGACTTGCCGCCTCCCGCCGGTGC
CCAGATGGGCGTCGTCTATCAGTGCGGCAGGTGCGGTAGGCTTGGACACA
CACCCCTCATATGTAGCGCACCGCGTAGGTTCGACGGCAACTGCACCTCG
TGCCACCAGTATGGCCACACTTCTCGCGACTGCGTTACCAACCAAGGGCC
TGGTGCAGTGCCTCCGAGCGTTCCACTGCCACAGTTCTCGGACGCCGGTG
GGCCGGACGATGGCTTGCAACGGAGCGGCATGAATGATGGTGCTGACAGG
ATGCCGCTGGCACAGAGACAGCTGGTGTATGATGATTTGCCTTTCGATCG
CGGCGACGGTGGTGGATGTGCAAGTACCACAGCAGCGGATAAAATGGACC
TGATGGAGAGAGGTGTCTTTCGTGTGCAGTGGTACCCAAACCCGCGACCG
GGGACGAACGAAGCCCGGTTGAGCTAGCATTGTTGGAGTCGCCTTCCGCG
GTAGTGCAACGCTCAGCAACGCCCGTTATGGTAGAATCCGTGTCGGTGGA
ACGGGATGTCCAGCAGTCATCACTGCGGGCGCAAGCGAAGGAGCAGCCAA
ATCCGGTAAGGGTGACGCCTTCGGAGGGCGAGCAGCTGGATCCGGTGGTG
GTGTCGCCGTCGGAGACCGGGGGGGCGTGTTCAGGGGTGGCTGACTTCTC
GTTCGACCTC

Coding sequence (CDS) from alignment at P-littoralis_Contig1300:30877..31636-

>mRNA_P-littoralis_Contig1300.9.1 ID=mRNA_P-littoralis_Contig1300.9.1|Name=mRNA_P-littoralis_Contig1300.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig1300:30877..31636- (Pylaiella littoralis U1_48)
ATGTACCACCAGGAGGACTTGCCGCCTCCCGCCGGTGCCCAGATGGGCGT
CGTCTATCAGTGCGGCAGGTGCGGTAGGCTTGGACACACACCCCTCATAT
GTAGCGCACCGCGTAGGTTCGACGGCAACTGCACCTCGTGCCACCAGTAT
GGCCACACTTCTCGCGACTGCGTTACCAACCAAGGGCCTGGTGCAGTGCC
TCCGAGCGTTCCACTGCCACAGTTCTCGGACGCCGGTGGGCCGGACGATG
GCTTGCAACGGAGCGGCATGAATGATGGTGCTGACAGGATGCCGCTGGCA
CAGAGACAGCTGGTGTATGATGATTTGCCTTTCGATCGCGGCGACGGTGG
TGGATGTGCAAGTACCACAGCAGCGGATAAAATGGACCTGATGGAGAGAG
GTGTCTTTCGTGTGCAGTGGTACCCAAACCCGCGACCGGGGACGAACGAA
GCCCGGTTGAGCTAG