mRNA_P-littoralis_Contig130.110.6 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: D8LC82_ECTSI (Haloacid dehalogenase (HAD) superfamily protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC82_ECTSI) HSP 1 Score: 421 bits (1083), Expect = 8.160e-140 Identity = 209/288 (72.57%), Postives = 234/288 (81.25%), Query Frame = 1
Query: 937 AAGCQ--GPIVEPWEDGVPGTDAGRAGFALLVTQSWCSLDSPSCRSKSTPWMGQSFNPQAVSSITRVIRHPALAVPHLSLTHIGQLDFEGLKAMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIFEGRVCIMSNSAGTRDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVHTQPLTLEGDNKPAAVFRFLEKRVFMNFFHQRCSVEPLAHHLCPEGAGVLERGGSEGSSRRETTPVLNET 1794
AAGC GP++ A G L + S + K TPWMGQSFN QAVSS++RV+RHPALAVPHLSL HIG+LDFEGLKAMGCKG+IFDKDNTLTAPY+DT HPLVEEGL+RCME+FEG VCIMSNSAGTRDDPDY DAIRIE ALGIPVLRHDEKKPGGIA+VL FFEGK+ EG VRLDELCF+GDRLLTDVVFGN+HGMLTVHTQPLTL+GDN+PAAVFR+LE++VFM FFHQ CSVEP AH LCPEGA VL+R G + ++ E TPVLNET
Sbjct: 31 AAGCSVAGPVLA--------FSASGFGVKALDSSDCVSSSTQRPNPKLTPWMGQSFNAQAVSSMSRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGIADVLAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKVFMGFFHQTCSVEPQAHRLCPEGARVLDREG-DTAAEPEPTPVLNET 309
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: A0A6H5K9X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X3_9PHAE) HSP 1 Score: 402 bits (1032), Expect = 2.820e-133 Identity = 191/236 (80.93%), Postives = 213/236 (90.25%), Query Frame = 1
Query: 1084 MGQSFNPQAVSSITRVIRHPALAVPHLSLTHIGQLDFEGLKAMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIFEGRVCIMSNSAGTRDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVHTQPLTLEGDNKPAAVFRFLEKRVFMNFFHQRCSVEPLAHHLCPEGAGVLERGGSEGSSRRETTPVLNE 1791
MGQSFN QAVSS+TRV+RHPALAVPHLSL +IG+LDFEGLKAMGCKG+IFDKDNTLTAPY+DT HPLVEEGL+RCME+FEG VCIMSNSAGTRDDPDY+ AIRIE ALGIPVLRHDEKKPGGIA+VL FF+GK+ EG VRLDELCF+GDRLLTDVVFGN+HGMLTVHTQPLTL+GDN+PAAVFR+LE++VFM FFHQ CSVEP AH LCPEGA VL+R G ++ E TP LNE
Sbjct: 1 MGQSFNAQAVSSMTRVVRHPALAVPHLSLANIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDYVHAIRIETALGIPVLRHDEKKPGGIADVLAFFKGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKVFMGFFHQTCSVEPQAHRLCPEGARVLDREGGT-AAEPEPTPALNE 235
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: A0A835Z207_9STRA (Mitochondrial PGP phosphatase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z207_9STRA) HSP 1 Score: 275 bits (704), Expect = 7.790e-84 Identity = 135/211 (63.98%), Postives = 159/211 (75.36%), Query Frame = 1
Query: 1078 PWMGQSFNPQAVSSITRVIRHPALAVPHLSLTHIGQLDFEGLKAMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIFEGRVCIMSNSAGTRDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVHTQPLTLEGDNKPAAVFRFLEKRVFMNFFHQRCSVEPLAHHL 1710
PWMGQSFN +AV ++ VIRHP+LAVPHL+LT+I QLDF LKAMG +GIIFDKDNTLTAPY + HP + +G RRC F G VCIMSNSAGT DD ++ AI+IE LGIPVLRH EKKPGG+ EVL FF + + + +LC IGDRLLTDVVFGN+HGMLTVHT+PLTL+GDNK A V R++E R+F N H R SVE H L
Sbjct: 3 PWMGQSFNSKAVRTLGSVIRHPSLAVPHLALTNIAQLDFAALKAMGIRGIIFDKDNTLTAPYVEELHPAISDGFRRCQSHFGGSVCIMSNSAGTGDDVNFESAIKIETGLGIPVLRHREKKPGGLPEVLAFFRERCAD-EGIEARDLCVIGDRLLTDVVFGNLHGMLTVHTKPLTLQGDNKVALVARYIESRIFFNIVHARFSVEAPQHRL 212
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: A0A7S1ISK9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1ISK9_9EUGL) HSP 1 Score: 245 bits (625), Expect = 1.320e-72 Identity = 123/206 (59.71%), Postives = 151/206 (73.30%), Query Frame = 1
Query: 1087 GQSFNPQAVSSITRVIRHPALAVPHLSLTHIGQLDFEGLKAMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIFEGRVCIMSNSAGTRDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVHTQPLTLEGDNKPAAVFRFLEKRVFMNFFHQRCSVEPLAH 1704
GQS+N A+ ++ RV P+LA+PH+++THIG LDF L+ GCKGI+FDKDNTLTAPY + HPLV EGL RC+ F+GRVCI+SNSAGT DD Y A +IE LG+PV+RH EKKP G+ +VLDFF ++ G VR EL +GDRLLTDVVFGN++GMLTVHT+PLTLEGDNK A V R LE VF+ R V+P H
Sbjct: 36 GQSWNANAMGALGRVAAQPSLAIPHVTVTHIGCLDFHALREAGCKGIVFDKDNTLTAPYVEEVHPLVREGLDRCLREFQGRVCILSNSAGTDDDEGYEAARKIEAGLGLPVIRHKEKKPAGLQDVLDFFHHQS--GEAVRPTELVMVGDRLLTDVVFGNLYGMLTVHTRPLTLEGDNKVARVIRPLETAVFLRL---RGVVKPPVH 236
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: A0A6V3JXN8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3JXN8_9EUKA) HSP 1 Score: 197 bits (500), Expect = 2.740e-54 Identity = 102/209 (48.80%), Postives = 133/209 (63.64%), Query Frame = 1
Query: 1084 MGQSFNPQAVSSITRVIRHPALAVPHLSLTHIGQLDFEGLKAMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIFEGR-VCIMSNSAGTRDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVH-TQPLTLEGDNKPAAVFRFLEKRVFMNFFHQRCSVEPLAH 1704
+GQS N A+ S+ RV+R P+L VPH+S+ H+G +DF LKA G + ++FDKDNTLTAPY HPL + +C+E F V IMSNSAGT DD +Y +A +E ALG+PVLRH KKPGG E+ + G T D++C IGDRL TDV+FG +HG+LTVH TQ L EGDN A + LE + + Q V+P+ H
Sbjct: 54 LGQSLNMDAIGSLARVLRKPSLLVPHVSVPHVGHMDFAALKASGIRAVVFDKDNTLTAPYSLEPHPLTKPAFAKCVEEFGAENVIIMSNSAGTNDDAEYREAKIVEDALGVPVLRHSAKKPGGFDELTAHYNGALTP------DQICIIGDRLFTDVLFGTLHGLLTVHVTQSLKHEGDNVLARAIKALENGILLRLL-QGVGVKPIYH 255
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: A0A448ZEQ0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEQ0_9STRA) HSP 1 Score: 193 bits (491), Expect = 2.250e-53 Identity = 104/206 (50.49%), Postives = 137/206 (66.50%), Query Frame = 1
Query: 1084 MGQSFNPQAVSSITRVIRHPALAVPHLSLTHIGQLDFEGLK-AMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIFEGR-VCIMSNSAGTRDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVHTQPLTLEG----DNKPAAVFRFLE-KRVFMNFFHQR 1680
M QS N +A++++ V+RHP L VPH+S+ ++ +L++ +K G + I+FDKDNTLTAPYD T H +GL+R EIF V IMSNSAGT+DDP Y DA IE ALGI V+RHDEKKPGG+ EVL F+ + LC +GDRLLTDVVFGN+H MLT+HT PL DN P+ + R++E K ++ N+F R
Sbjct: 1 MVQSLNAKALATLAYVLRHPTLIVPHVSVANVSELNYRAMKECAGIRAILFDKDNTLTAPYDMTVHRDAAKGLKRAKEIFGAENVAIMSNSAGTKDDPGYEDAKMIEEALGIAVIRHDEKKPGGLDEVLKHFDVDDPA-------TLCMVGDRLLTDVVFGNLHSMLTIHTLPLCKGAENRQDNTPSKIIRYIENKGLYGNWFGSR 199
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: W7U306_9STRA (Haloacid dehalogenase superfamily protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U306_9STRA) HSP 1 Score: 194 bits (494), Expect = 1.980e-52 Identity = 107/189 (56.61%), Postives = 129/189 (68.25%), Query Frame = 1
Query: 1084 MGQSFNPQAVSSITRVIRHPALAVPHLSLTHIGQLDFEGLKAMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIFEGR-VCIMSNSAGTRDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVHTQPLTLEGDNKPAAVFRFLE 1647
M QS N Q V +I +VIR+P+L +PH+S+ HIG LDFE L+ G KG+IFDKDNT+TAPY D H V +F R + I+SNSAGT DD + AIRIE +LG+PVLRH KKPG I EVL+ F K G ++LC IGDRLLTDV++GN GMLTVHTQ LT EGDNK AA+ R LE
Sbjct: 79 MVQSLNLQGVLAIGQVIRNPSLMLPHVSVKHIGFLDFELLRQAGIKGVIFDKDNTITAPYVDEVHEQVAGAFETSKRVFGPRKLIIISNSAGTLDDSGHAAAIRIESSLGVPVLRHAVKKPGAIPEVLEHF--KKECGPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVHTQILTPEGDNKVAAIVRRLE 265
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: A0A7S2TGD2_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TGD2_9EUKA) HSP 1 Score: 192 bits (489), Expect = 2.170e-52 Identity = 98/218 (44.95%), Postives = 139/218 (63.76%), Query Frame = 1
Query: 1084 MGQSFNPQAVSSITRVIRHPALAVPHLSLTHIGQLDFEGLKAMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIFEGR-VCIMSNSAGTRDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVH-TQPLTLEGDNKPAAVFRFLEKRVFMNFFHQRCSVEPLAHHLCPEGAGV 1731
+GQS N A+ ++ +VIR P+L +PH+S+ H+G LDF+ L+A G + ++FDKDNTLTAPY HPL + G +C+E+F V IMSNSAGT DD ++ +A +E ALG+PVLRH KKPGG AE+ + G T D++C +GDRL TDV+FG +HG+L+V TQ L +GDN A V + LE + + + ++P+ H E A
Sbjct: 79 LGQSLNLDAIGALAQVIRRPSLLLPHISVPHVGHLDFDALRASGIRAVVFDKDNTLTAPYSLEPHPLTKPGFEKCVEVFGAENVMIMSNSAGTDDDEEHREARVVEEALGVPVLRHRAKKPGGYAELAAHYGGALTP------DQMCIVGDRLFTDVLFGTLHGLLSVQVTQSLKHQGDNALARVIKALENGILLRLLNG-LGLKPIYHPAVQEKAAT 289
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: R1CM78_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CM78_EMIHU) HSP 1 Score: 185 bits (470), Expect = 1.180e-50 Identity = 111/228 (48.68%), Postives = 131/228 (57.46%), Query Frame = 1
Query: 1084 MGQSFNPQAVSSITRVI-RHPALAVPHLSLTHIGQLDFEGLKAMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIFEG-RVCIMSNSAGTRDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVHTQPLTLEGDNKPAAVFRFLEKRVFMNFFHQRCSVEPLAHHLCPEGAGVLERGGSEGSS 1761
M QS N AV + RVI R PALA+PH + I +LDF L+ GC G+IFDKDNTLTAPY D HP + LRRC+E F RV ++SNSAGT DDP + A +E ALG+ VLR KKP GI V F+ T L +GDR LTDVVFGNMHGMLTVHTQ LT EGDN+ A R E + + + P H L G GG+ G S
Sbjct: 1 MVQSLNLAAVRTTARVILREPALALPHQRVRDISELDFAELREAGCHGVIFDKDNTLTAPYSDEVHPRLAGSLRRCVETFGAERVAVLSNSAGTPDDPGGVAADALEAALGVHVLRRRHKKPRGIESVQRHFQCDGTA--------LLMVGDRYLTDVVFGNMHGMLTVHTQQLTTEGDNRVAQAMRRAEDWLVARYVRRGVRAPP--HPLALNSWGP---GGARGRS 215
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: A0A1Z5JVZ9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVZ9_FISSO) HSP 1 Score: 183 bits (465), Expect = 9.830e-50 Identity = 96/181 (53.04%), Postives = 126/181 (69.61%), Query Frame = 1
Query: 1084 MGQSFNPQAVSSITRVIRHPALAVPHLSLTHIGQLDFEGLK-AMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIF-EGRVCIMSNSAGT-RDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVHTQPLTLEGDN 1617
M QS N +A+ ++ V R PAL VPHLS+ + Q++++ LK G + +IFDKDNTLTAPY HP +GL+R +++F + RV I+SNSAGT +DDPD+ DA++IE ALGI V+RH EKKPGG+ EVL F + +LC +GDRLLTD+VFGN+HGMLTVHT PL DN
Sbjct: 1 MVQSVNSKAILTLASVARRPALLVPHLSVPTVSQINYDALKRCAGIEAVIFDKDNTLTAPYGSCVHPDASDGLQRVLDVFGKERVAILSNSAGTVQDDPDFRDALQIEEALGISVIRHKEKKPGGLEEVLQHFAMTDPA-------KLCMVGDRLLTDIVFGNIHGMLTVHTLPLCKGRDN 174 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig130.110.6 >prot_P-littoralis_Contig130.110.6 ID=prot_P-littoralis_Contig130.110.6|Name=mRNA_P-littoralis_Contig130.110.6|organism=Pylaiella littoralis U1_48|type=polypeptide|length=367bp MLCQLVAWWSIQMINNSVLNKPQRCSRAVNSPCLLNQKPEGRFEEWPWSGback to top mRNA from alignment at P-littoralis_Contig130:459758..463252+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig130.110.6 ID=mRNA_P-littoralis_Contig130.110.6|Name=mRNA_P-littoralis_Contig130.110.6|organism=Pylaiella littoralis U1_48|type=mRNA|length=3495bp|location=Sequence derived from alignment at P-littoralis_Contig130:459758..463252+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig130:459758..463252+ >mRNA_P-littoralis_Contig130.110.6 ID=mRNA_P-littoralis_Contig130.110.6|Name=mRNA_P-littoralis_Contig130.110.6|organism=Pylaiella littoralis U1_48|type=CDS|length=1101bp|location=Sequence derived from alignment at P-littoralis_Contig130:459758..463252+ (Pylaiella littoralis U1_48)back to top |