mRNA_P-littoralis_Contig130.110.6 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig130.110.6
Unique NamemRNA_P-littoralis_Contig130.110.6
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: D8LC82_ECTSI (Haloacid dehalogenase (HAD) superfamily protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC82_ECTSI)

HSP 1 Score: 421 bits (1083), Expect = 8.160e-140
Identity = 209/288 (72.57%), Postives = 234/288 (81.25%), Query Frame = 1
Query:  937 AAGCQ--GPIVEPWEDGVPGTDAGRAGFALLVTQSWCSLDSPSCRSKSTPWMGQSFNPQAVSSITRVIRHPALAVPHLSLTHIGQLDFEGLKAMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIFEGRVCIMSNSAGTRDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVHTQPLTLEGDNKPAAVFRFLEKRVFMNFFHQRCSVEPLAHHLCPEGAGVLERGGSEGSSRRETTPVLNET 1794
            AAGC   GP++           A   G   L +    S  +     K TPWMGQSFN QAVSS++RV+RHPALAVPHLSL HIG+LDFEGLKAMGCKG+IFDKDNTLTAPY+DT HPLVEEGL+RCME+FEG VCIMSNSAGTRDDPDY DAIRIE ALGIPVLRHDEKKPGGIA+VL FFEGK+ EG  VRLDELCF+GDRLLTDVVFGN+HGMLTVHTQPLTL+GDN+PAAVFR+LE++VFM FFHQ CSVEP AH LCPEGA VL+R G + ++  E TPVLNET
Sbjct:   31 AAGCSVAGPVLA--------FSASGFGVKALDSSDCVSSSTQRPNPKLTPWMGQSFNAQAVSSMSRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGIADVLAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKVFMGFFHQTCSVEPQAHRLCPEGARVLDREG-DTAAEPEPTPVLNET 309          
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: A0A6H5K9X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X3_9PHAE)

HSP 1 Score: 402 bits (1032), Expect = 2.820e-133
Identity = 191/236 (80.93%), Postives = 213/236 (90.25%), Query Frame = 1
Query: 1084 MGQSFNPQAVSSITRVIRHPALAVPHLSLTHIGQLDFEGLKAMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIFEGRVCIMSNSAGTRDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVHTQPLTLEGDNKPAAVFRFLEKRVFMNFFHQRCSVEPLAHHLCPEGAGVLERGGSEGSSRRETTPVLNE 1791
            MGQSFN QAVSS+TRV+RHPALAVPHLSL +IG+LDFEGLKAMGCKG+IFDKDNTLTAPY+DT HPLVEEGL+RCME+FEG VCIMSNSAGTRDDPDY+ AIRIE ALGIPVLRHDEKKPGGIA+VL FF+GK+ EG  VRLDELCF+GDRLLTDVVFGN+HGMLTVHTQPLTL+GDN+PAAVFR+LE++VFM FFHQ CSVEP AH LCPEGA VL+R G   ++  E TP LNE
Sbjct:    1 MGQSFNAQAVSSMTRVVRHPALAVPHLSLANIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDYVHAIRIETALGIPVLRHDEKKPGGIADVLAFFKGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKVFMGFFHQTCSVEPQAHRLCPEGARVLDREGGT-AAEPEPTPALNE 235          
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: A0A835Z207_9STRA (Mitochondrial PGP phosphatase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z207_9STRA)

HSP 1 Score: 275 bits (704), Expect = 7.790e-84
Identity = 135/211 (63.98%), Postives = 159/211 (75.36%), Query Frame = 1
Query: 1078 PWMGQSFNPQAVSSITRVIRHPALAVPHLSLTHIGQLDFEGLKAMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIFEGRVCIMSNSAGTRDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVHTQPLTLEGDNKPAAVFRFLEKRVFMNFFHQRCSVEPLAHHL 1710
            PWMGQSFN +AV ++  VIRHP+LAVPHL+LT+I QLDF  LKAMG +GIIFDKDNTLTAPY +  HP + +G RRC   F G VCIMSNSAGT DD ++  AI+IE  LGIPVLRH EKKPGG+ EVL FF  +  +   +   +LC IGDRLLTDVVFGN+HGMLTVHT+PLTL+GDNK A V R++E R+F N  H R SVE   H L
Sbjct:    3 PWMGQSFNSKAVRTLGSVIRHPSLAVPHLALTNIAQLDFAALKAMGIRGIIFDKDNTLTAPYVEELHPAISDGFRRCQSHFGGSVCIMSNSAGTGDDVNFESAIKIETGLGIPVLRHREKKPGGLPEVLAFFRERCAD-EGIEARDLCVIGDRLLTDVVFGNLHGMLTVHTKPLTLQGDNKVALVARYIESRIFFNIVHARFSVEAPQHRL 212          
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: A0A7S1ISK9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1ISK9_9EUGL)

HSP 1 Score: 245 bits (625), Expect = 1.320e-72
Identity = 123/206 (59.71%), Postives = 151/206 (73.30%), Query Frame = 1
Query: 1087 GQSFNPQAVSSITRVIRHPALAVPHLSLTHIGQLDFEGLKAMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIFEGRVCIMSNSAGTRDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVHTQPLTLEGDNKPAAVFRFLEKRVFMNFFHQRCSVEPLAH 1704
            GQS+N  A+ ++ RV   P+LA+PH+++THIG LDF  L+  GCKGI+FDKDNTLTAPY +  HPLV EGL RC+  F+GRVCI+SNSAGT DD  Y  A +IE  LG+PV+RH EKKP G+ +VLDFF  ++  G  VR  EL  +GDRLLTDVVFGN++GMLTVHT+PLTLEGDNK A V R LE  VF+     R  V+P  H
Sbjct:   36 GQSWNANAMGALGRVAAQPSLAIPHVTVTHIGCLDFHALREAGCKGIVFDKDNTLTAPYVEEVHPLVREGLDRCLREFQGRVCILSNSAGTDDDEGYEAARKIEAGLGLPVIRHKEKKPAGLQDVLDFFHHQS--GEAVRPTELVMVGDRLLTDVVFGNLYGMLTVHTRPLTLEGDNKVARVIRPLETAVFLRL---RGVVKPPVH 236          
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: A0A6V3JXN8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3JXN8_9EUKA)

HSP 1 Score: 197 bits (500), Expect = 2.740e-54
Identity = 102/209 (48.80%), Postives = 133/209 (63.64%), Query Frame = 1
Query: 1084 MGQSFNPQAVSSITRVIRHPALAVPHLSLTHIGQLDFEGLKAMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIFEGR-VCIMSNSAGTRDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVH-TQPLTLEGDNKPAAVFRFLEKRVFMNFFHQRCSVEPLAH 1704
            +GQS N  A+ S+ RV+R P+L VPH+S+ H+G +DF  LKA G + ++FDKDNTLTAPY    HPL +    +C+E F    V IMSNSAGT DD +Y +A  +E ALG+PVLRH  KKPGG  E+   + G  T       D++C IGDRL TDV+FG +HG+LTVH TQ L  EGDN  A   + LE  + +    Q   V+P+ H
Sbjct:   54 LGQSLNMDAIGSLARVLRKPSLLVPHVSVPHVGHMDFAALKASGIRAVVFDKDNTLTAPYSLEPHPLTKPAFAKCVEEFGAENVIIMSNSAGTNDDAEYREAKIVEDALGVPVLRHSAKKPGGFDELTAHYNGALTP------DQICIIGDRLFTDVLFGTLHGLLTVHVTQSLKHEGDNVLARAIKALENGILLRLL-QGVGVKPIYH 255          
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: A0A448ZEQ0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEQ0_9STRA)

HSP 1 Score: 193 bits (491), Expect = 2.250e-53
Identity = 104/206 (50.49%), Postives = 137/206 (66.50%), Query Frame = 1
Query: 1084 MGQSFNPQAVSSITRVIRHPALAVPHLSLTHIGQLDFEGLK-AMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIFEGR-VCIMSNSAGTRDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVHTQPLTLEG----DNKPAAVFRFLE-KRVFMNFFHQR 1680
            M QS N +A++++  V+RHP L VPH+S+ ++ +L++  +K   G + I+FDKDNTLTAPYD T H    +GL+R  EIF    V IMSNSAGT+DDP Y DA  IE ALGI V+RHDEKKPGG+ EVL  F+  +          LC +GDRLLTDVVFGN+H MLT+HT PL        DN P+ + R++E K ++ N+F  R
Sbjct:    1 MVQSLNAKALATLAYVLRHPTLIVPHVSVANVSELNYRAMKECAGIRAILFDKDNTLTAPYDMTVHRDAAKGLKRAKEIFGAENVAIMSNSAGTKDDPGYEDAKMIEEALGIAVIRHDEKKPGGLDEVLKHFDVDDPA-------TLCMVGDRLLTDVVFGNLHSMLTIHTLPLCKGAENRQDNTPSKIIRYIENKGLYGNWFGSR 199          
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: W7U306_9STRA (Haloacid dehalogenase superfamily protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U306_9STRA)

HSP 1 Score: 194 bits (494), Expect = 1.980e-52
Identity = 107/189 (56.61%), Postives = 129/189 (68.25%), Query Frame = 1
Query: 1084 MGQSFNPQAVSSITRVIRHPALAVPHLSLTHIGQLDFEGLKAMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIFEGR-VCIMSNSAGTRDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVHTQPLTLEGDNKPAAVFRFLE 1647
            M QS N Q V +I +VIR+P+L +PH+S+ HIG LDFE L+  G KG+IFDKDNT+TAPY D  H  V         +F  R + I+SNSAGT DD  +  AIRIE +LG+PVLRH  KKPG I EVL+ F  K   G     ++LC IGDRLLTDV++GN  GMLTVHTQ LT EGDNK AA+ R LE
Sbjct:   79 MVQSLNLQGVLAIGQVIRNPSLMLPHVSVKHIGFLDFELLRQAGIKGVIFDKDNTITAPYVDEVHEQVAGAFETSKRVFGPRKLIIISNSAGTLDDSGHAAAIRIESSLGVPVLRHAVKKPGAIPEVLEHF--KKECGPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVHTQILTPEGDNKVAAIVRRLE 265          
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: A0A7S2TGD2_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TGD2_9EUKA)

HSP 1 Score: 192 bits (489), Expect = 2.170e-52
Identity = 98/218 (44.95%), Postives = 139/218 (63.76%), Query Frame = 1
Query: 1084 MGQSFNPQAVSSITRVIRHPALAVPHLSLTHIGQLDFEGLKAMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIFEGR-VCIMSNSAGTRDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVH-TQPLTLEGDNKPAAVFRFLEKRVFMNFFHQRCSVEPLAHHLCPEGAGV 1731
            +GQS N  A+ ++ +VIR P+L +PH+S+ H+G LDF+ L+A G + ++FDKDNTLTAPY    HPL + G  +C+E+F    V IMSNSAGT DD ++ +A  +E ALG+PVLRH  KKPGG AE+   + G  T       D++C +GDRL TDV+FG +HG+L+V  TQ L  +GDN  A V + LE  + +   +    ++P+ H    E A  
Sbjct:   79 LGQSLNLDAIGALAQVIRRPSLLLPHISVPHVGHLDFDALRASGIRAVVFDKDNTLTAPYSLEPHPLTKPGFEKCVEVFGAENVMIMSNSAGTDDDEEHREARVVEEALGVPVLRHRAKKPGGYAELAAHYGGALTP------DQMCIVGDRLFTDVLFGTLHGLLSVQVTQSLKHQGDNALARVIKALENGILLRLLNG-LGLKPIYHPAVQEKAAT 289          
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: R1CM78_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CM78_EMIHU)

HSP 1 Score: 185 bits (470), Expect = 1.180e-50
Identity = 111/228 (48.68%), Postives = 131/228 (57.46%), Query Frame = 1
Query: 1084 MGQSFNPQAVSSITRVI-RHPALAVPHLSLTHIGQLDFEGLKAMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIFEG-RVCIMSNSAGTRDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVHTQPLTLEGDNKPAAVFRFLEKRVFMNFFHQRCSVEPLAHHLCPEGAGVLERGGSEGSS 1761
            M QS N  AV +  RVI R PALA+PH  +  I +LDF  L+  GC G+IFDKDNTLTAPY D  HP +   LRRC+E F   RV ++SNSAGT DDP  + A  +E ALG+ VLR   KKP GI  V   F+   T         L  +GDR LTDVVFGNMHGMLTVHTQ LT EGDN+ A   R  E  +   +  +     P  H L     G    GG+ G S
Sbjct:    1 MVQSLNLAAVRTTARVILREPALALPHQRVRDISELDFAELREAGCHGVIFDKDNTLTAPYSDEVHPRLAGSLRRCVETFGAERVAVLSNSAGTPDDPGGVAADALEAALGVHVLRRRHKKPRGIESVQRHFQCDGTA--------LLMVGDRYLTDVVFGNMHGMLTVHTQQLTTEGDNRVAQAMRRAEDWLVARYVRRGVRAPP--HPLALNSWGP---GGARGRS 215          
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Match: A0A1Z5JVZ9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVZ9_FISSO)

HSP 1 Score: 183 bits (465), Expect = 9.830e-50
Identity = 96/181 (53.04%), Postives = 126/181 (69.61%), Query Frame = 1
Query: 1084 MGQSFNPQAVSSITRVIRHPALAVPHLSLTHIGQLDFEGLK-AMGCKGIIFDKDNTLTAPYDDTAHPLVEEGLRRCMEIF-EGRVCIMSNSAGT-RDDPDYIDAIRIEMALGIPVLRHDEKKPGGIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVHTQPLTLEGDN 1617
            M QS N +A+ ++  V R PAL VPHLS+  + Q++++ LK   G + +IFDKDNTLTAPY    HP   +GL+R +++F + RV I+SNSAGT +DDPD+ DA++IE ALGI V+RH EKKPGG+ EVL  F   +         +LC +GDRLLTD+VFGN+HGMLTVHT PL    DN
Sbjct:    1 MVQSVNSKAILTLASVARRPALLVPHLSVPTVSQINYDALKRCAGIEAVIFDKDNTLTAPYGSCVHPDASDGLQRVLDVFGKERVAILSNSAGTVQDDPDFRDALQIEEALGISVIRHKEKKPGGLEEVLQHFAMTDPA-------KLCMVGDRLLTDIVFGNIHGMLTVHTLPLCKGRDN 174          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig130.110.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC82_ECTSI8.160e-14072.57Haloacid dehalogenase (HAD) superfamily protein n=... [more]
A0A6H5K9X3_9PHAE2.820e-13380.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z207_9STRA7.790e-8463.98Mitochondrial PGP phosphatase-domain-containing pr... [more]
A0A7S1ISK9_9EUGL1.320e-7259.71Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A6V3JXN8_9EUKA2.740e-5448.80Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A448ZEQ0_9STRA2.250e-5350.49Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
W7U306_9STRA1.980e-5256.61Haloacid dehalogenase superfamily protein n=1 Tax=... [more]
A0A7S2TGD2_9EUKA2.170e-5244.95Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
R1CM78_EMIHU1.180e-5048.68Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A1Z5JVZ9_FISSO9.830e-5053.04Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig130contigP-littoralis_Contig130:459758..463252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LC82
Preferred nameGEP4
PFAMsPGP_phosphatase
Model size2158
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K01094
KEGG ReactionR02029
KEGG Pathwayko00564,ko01100,map00564,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005975,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008962,GO:0009058,GO:0009987,GO:0016043,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0031974,GO:0032048,GO:0032049,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044262,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0046838,GO:0061024,GO:0070013,GO:0071704,GO:0071840,GO:0090407,GO:1901576
Exons6
Evalue6.99e-146
EggNOG OGsCOG1011@1|root,KOG2961@2759|Eukaryota
EC3.1.3.27
Descriptionphosphatase
Cds size1101
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig130.110.6prot_P-littoralis_Contig130.110.6Pylaiella littoralis U1_48polypeptideP-littoralis_Contig130 460454..462891 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789592.8674176-UTR-P-littoralis_Contig130:459757..4604531680789592.8674176-UTR-P-littoralis_Contig130:459757..460453Pylaiella littoralis U1_48UTRP-littoralis_Contig130 459758..460453 +
1680789593.109533-UTR-P-littoralis_Contig130:462891..4632521680789593.109533-UTR-P-littoralis_Contig130:462891..463252Pylaiella littoralis U1_48UTRP-littoralis_Contig130 462892..463252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789592.8853967-CDS-P-littoralis_Contig130:460453..4608841680789592.8853967-CDS-P-littoralis_Contig130:460453..460884Pylaiella littoralis U1_48CDSP-littoralis_Contig130 460454..460884 +
1680789592.9303544-CDS-P-littoralis_Contig130:461159..4612711680789592.9303544-CDS-P-littoralis_Contig130:461159..461271Pylaiella littoralis U1_48CDSP-littoralis_Contig130 461160..461271 +
1680789592.9419746-CDS-P-littoralis_Contig130:461452..4615741680789592.9419746-CDS-P-littoralis_Contig130:461452..461574Pylaiella littoralis U1_48CDSP-littoralis_Contig130 461453..461574 +
1680789592.955118-CDS-P-littoralis_Contig130:461797..4619361680789592.955118-CDS-P-littoralis_Contig130:461797..461936Pylaiella littoralis U1_48CDSP-littoralis_Contig130 461798..461936 +
1680789592.9629374-CDS-P-littoralis_Contig130:462319..4624721680789592.9629374-CDS-P-littoralis_Contig130:462319..462472Pylaiella littoralis U1_48CDSP-littoralis_Contig130 462320..462472 +
1680789593.098391-CDS-P-littoralis_Contig130:462747..4628911680789593.098391-CDS-P-littoralis_Contig130:462747..462891Pylaiella littoralis U1_48CDSP-littoralis_Contig130 462748..462891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig130.110.6

>prot_P-littoralis_Contig130.110.6 ID=prot_P-littoralis_Contig130.110.6|Name=mRNA_P-littoralis_Contig130.110.6|organism=Pylaiella littoralis U1_48|type=polypeptide|length=367bp
MLCQLVAWWSIQMINNSVLNKPQRCSRAVNSPCLLNQKPEGRFEEWPWSG
CVVLFLHSFLLSNPWATDFHDLGTRELFQRAAGCQGPIVEPWEDGVPGTD
AGRAGFALLVTQSWCSLDSPSCRSKSTPWMGQSFNPQAVSSITRVIRHPA
LAVPHLSLTHIGQLDFEGLKAMGCKGIIFDKDNTLTAPYDDTAHPLVEEG
LRRCMEIFEGRVCIMSNSAGTRDDPDYIDAIRIEMALGIPVLRHDEKKPG
GIAEVLDFFEGKNTEGRPVRLDELCFIGDRLLTDVVFGNMHGMLTVHTQP
LTLEGDNKPAAVFRFLEKRVFMNFFHQRCSVEPLAHHLCPEGAGVLERGG
SEGSSRRETTPVLNET*
back to top

mRNA from alignment at P-littoralis_Contig130:459758..463252+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig130.110.6 ID=mRNA_P-littoralis_Contig130.110.6|Name=mRNA_P-littoralis_Contig130.110.6|organism=Pylaiella littoralis U1_48|type=mRNA|length=3495bp|location=Sequence derived from alignment at P-littoralis_Contig130:459758..463252+ (Pylaiella littoralis U1_48)
CACTTTTTGAAGGCTCGAAATGCACCCGAATAGGAAAAGGTATCTCAGCC AAGCAGTCGGGTAGCGTAAGGTACCACACCCCCAACACCGTCCCACAAGA GATCACCCCGGTGGTACTTTCAGCGGTGTATCTACATTATAGACGGAGTG CATCTAAGTTTTTTGTACTGTACTCCGGAGTAGATGACGACGCTGACGTT GGTCCTGACCCAACACGGAGGCGGCGTCTTCTTTCTCGGATTGGGTTGTG GCGAGGAATGCCAAGCGCTTCCGAGCGAACTCGGATAAGCTAGGGTAAGG TGGGGAGTGGGGTCAAGCTATCGTGAGCTGTTTTTCACCGACCCCAAAGA TTCAGTCGGCGTTTGCAGCAATTGATAAATTTTCGGTGTCCAGATATGGA TACTACTGCTGTACAGTGAAAATCAGCTTACCCCGAGGGATTTCCATGCC TGCCTGGTGCGTATATGCGTCTTTACTGCTGAGAAGATTCAATATCCTGG CATTCATATTCTTCTTTTTGCATGAGTGTTTTTATTCCCAGCTGGACGCT CTTTGACAAAGGATTCACGATTTCAAGAGATATCCCCTTGAGGCGCGGCT TAGGTAGGCGTTCCATTCAGTATGTAATTTTATCTCCAAGTGTGCACAGC ATCAGGTCGGGGAACGCAAACGATAGTTGCATACGGTAGTGTCGCAATGC TGTGCCAGCTAGTAGCCTGGTGGTCAATTCAAATGATCAACAACAGTGTT TTGAATAAACCTCAGCGTTGCTCGCGTGCTGTCAACAGCCCTTGTCTATT GAACCAGAAGCCAGAGGGCAGATTCGAAGAGTGGCCTTGGTCTGGTTGTG TTGTGCTGTTTCTTCACAGCTTTCTGTTGAGCAACCCATGGGCTACTGAC TTCCACGACCTCGGTACTCGAGAACTATTCCAACGTGCCGCGGGCTGCCA GGGGCCTATTGTGGAGCCATGGGAAGACGGCGTCCCCGGCACCGACGCAG GAAGAGCGGGCTTCGCATTGTTGGTCACTCAAAGCTGGTGTTCTCTTGAC TCCCCCTCTTGCAGGTCGAAGTCAACCCCGTGGATGGGGCAGAGCTTCAA TCCGCAGGCGGTTTCTTCAATAACCCGGTGAGGGGCAAACGACGTTCGGC AGATAATAACAATTTCCAAATTTAGAAAAACAAAAATATCAGTACCCATC ACTCACCTTTGCTACACACGTTTGAGCTTGGTGTCGGCTCCAACCAGGAA AAAACGTCACTGGTGTTCAGAGCAGTAGCCTCTTGTGGCGGTAGGCACGA AGCATGCACGAACGATCGACACTGCCCATCGAGCGTTTCTCCCACTGACT AGACCCTCACCACCGGGTTGTTTTCGCGATGCGCAACCTGGAAAAAAAAC AGGGTGATCCGACATCCTGCGCTGGCGGTGCCACACTTGTCGTTGACTCA CATTGGTCAATTGGATTTTGAGGGTCTGAAAGCCATGGGCTGCAAAGGGA TTATCTTCGACAAGGTGAGAGGGGCACGTGCTAGTGTAACCGTCGTAGCT CGAAAGTTGGGTGGTTCGTTCTCTCTCTTGTCGGTATAGAACGCCGCCGG CCTAACTTTGTTCCCGTGGCGCACCCCACAAGAGGGAACGTGTCTCGCGC CATGATATCATAATATCACTTCCTGTCCATTTCCTCGATGATCAGGACAA TACTTTGACAGCTCCATATGACGACACCGCCCACCCTCTGGTGGAGGAAG GCCTCCGGCGATGCATGGAAATATTCGAGGGAAGAGTTTGTATCATGTCC AACTCGGCGGGTACGAGGTAACGTTTTACGTAAGCTGTTTGTACATGGAT CTTGATACTGAGTTCAGCCGGCTGGTTTTGATGCATGTCTGGGTGCCATA CAGCGAACGTGATGCCGTCTCCTTGAAGTGTGCTATCATAGCATGGTTGG AGCTTTGTGTATGCCAATATGACAGGGCGTTGTTTGGAGGCTCGTTAATA CACGGCGATGTCTCGTCGATGGTGTTCTCGGCCCTTGCAGAGACGACCCC GACTACATCGACGCTATCCGCATCGAAATGGCGCTGGGGATTCCGGTACT GAGGCACGACGAGAAAAAACCAGGAGGGATTGCGGAGGTTTTAGATTTTT TCGAGGGAAAGAACACAGAAGGACGACCCGTGAGTGGTGAACTGTTTGTT CTCGCCCATCGGTTTTCCTTATGAGCTCAGGCGTTTGGGAACAGTGTGGG TGATTCCGCGCGAGACAGCGTACGAGGCACGATACAAGTCGTGCTGGTGT AGGTTTAACCTTGTATTCGGGACAACATTTTTGTTTGAGTGGTTCCAGGT ATATACCAGCCTGCGGATTTGCTGAGCATTTGAAAAGGGCGGCGCGATGG CTATGATAACGGCGATCATGTCAATCAACTTGTTGCGGGGTCGACAACAC CTTCCGTTTTAGGGAAGACGACAGACCATATAGGAGAGATGGGTGAACGC GCGGCCGTAGTCCCAAGACTCATGCCTCGCTTCTTACCGGCATTTGCTCA AAAACGCTACAGGTCCGATTAGACGAGCTGTGCTTCATAGGGGATCGTCT TCTCACGGACGTGGTTTTCGGCAACATGCACGGTATGCTTACCGTGCACA CCCAGCCGCTAACGCTCGAAGGGGACAACAAGCCAGCAGCTGTCTTCCGC TTCCTGGAGAAAAGGGTGTGAAGTAAAGGTCGCTGGGTTGCCAGAAAGCA CCCACCTAAGTCGATCATGCGTTGTTTTGTTCGCACTGCTGTGGACTTCG CAGGGTTAGGTCTGGCAAGGACAGCGCGACGGAGGAAGCCTCGGCGCAGC CACCTATTTGTTGAGCTCCGTGCTTGACTTCGTTTCGCCCAAACTGCCCA AACTGCATGCACATTTGTTTTTGCTCCCATCATTTTTTTTTTTAACAAAC GAACACCTCCCGCCCCGGCCACACTGTTCCAATCCGGCAGGTGTTCATGA ACTTTTTCCACCAGAGGTGTTCTGTAGAGCCGCTAGCACATCACCTGTGC CCCGAGGGGGCCGGCGTCTTGGAACGAGGGGGCAGCGAGGGTTCCTCAAG ACGAGAAACAACGCCAGTCTTGAATGAAACGTAGCGAGCGTTTACTCTCT CGACCTCGATAATGTACTTTAGGTGGTCAACTTTACCGAAACCAATGCCT CCACCTACCTTCGTGATAAGTTGTGTCGCCTGTTGTATTTTCAGAAATTG GGCTGTTTCTGAGCGTTACGCTTGCTCAACCCCTCTATGGTGGCACTACT GCTGTCAGAGGCAAAAGCCGTGGTTCATGAGGGGTATTCGAGGGCCGGCC GCACTTGTTGTGGGCTGCTGCTGCTGCGGGCGGTCCCGAAATAAGCTCTA AAATGTGTCGTGACACACTGGGAGGAATATTGTTATGTTACAGATCATAA GTTCCTTTCGTATGTACTACAAATGCATGCGGTGCGAAACAAAAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig130:459758..463252+

>mRNA_P-littoralis_Contig130.110.6 ID=mRNA_P-littoralis_Contig130.110.6|Name=mRNA_P-littoralis_Contig130.110.6|organism=Pylaiella littoralis U1_48|type=CDS|length=1101bp|location=Sequence derived from alignment at P-littoralis_Contig130:459758..463252+ (Pylaiella littoralis U1_48)
ATGCTGTGCCAGCTAGTAGCCTGGTGGTCAATTCAAATGATCAACAACAG
TGTTTTGAATAAACCTCAGCGTTGCTCGCGTGCTGTCAACAGCCCTTGTC
TATTGAACCAGAAGCCAGAGGGCAGATTCGAAGAGTGGCCTTGGTCTGGT
TGTGTTGTGCTGTTTCTTCACAGCTTTCTGTTGAGCAACCCATGGGCTAC
TGACTTCCACGACCTCGGTACTCGAGAACTATTCCAACGTGCCGCGGGCT
GCCAGGGGCCTATTGTGGAGCCATGGGAAGACGGCGTCCCCGGCACCGAC
GCAGGAAGAGCGGGCTTCGCATTGTTGGTCACTCAAAGCTGGTGTTCTCT
TGACTCCCCCTCTTGCAGGTCGAAGTCAACCCCGTGGATGGGGCAGAGCT
TCAATCCGCAGGCGGTTTCTTCAATAACCCGGGTGATCCGACATCCTGCG
CTGGCGGTGCCACACTTGTCGTTGACTCACATTGGTCAATTGGATTTTGA
GGGTCTGAAAGCCATGGGCTGCAAAGGGATTATCTTCGACAAGGACAATA
CTTTGACAGCTCCATATGACGACACCGCCCACCCTCTGGTGGAGGAAGGC
CTCCGGCGATGCATGGAAATATTCGAGGGAAGAGTTTGTATCATGTCCAA
CTCGGCGGGTACGAGAGACGACCCCGACTACATCGACGCTATCCGCATCG
AAATGGCGCTGGGGATTCCGGTACTGAGGCACGACGAGAAAAAACCAGGA
GGGATTGCGGAGGTTTTAGATTTTTTCGAGGGAAAGAACACAGAAGGACG
ACCCGTCCGATTAGACGAGCTGTGCTTCATAGGGGATCGTCTTCTCACGG
ACGTGGTTTTCGGCAACATGCACGGTATGCTTACCGTGCACACCCAGCCG
CTAACGCTCGAAGGGGACAACAAGCCAGCAGCTGTCTTCCGCTTCCTGGA
GAAAAGGGTGTTCATGAACTTTTTCCACCAGAGGTGTTCTGTAGAGCCGC
TAGCACATCACCTGTGCCCCGAGGGGGCCGGCGTCTTGGAACGAGGGGGC
AGCGAGGGTTCCTCAAGACGAGAAACAACGCCAGTCTTGAATGAAACGTA
G
back to top