mRNA_P-littoralis_Contig13.141.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.141.1
Unique NamemRNA_P-littoralis_Contig13.141.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5JV95_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV95_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 5.600e-26
Identity = 52/76 (68.42%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPRCRP 267
            PPV STYPFLKPAV K  RK KS  KG+K WYLGPA +H RDCVRMLTE  T+IITRNFTWR VP+  P  P+  P
Sbjct:  192 PPVRSTYPFLKPAVFKSRRKAKSQIKGEKGWYLGPAYNHPRDCVRMLTEAGTVIITRNFTWRHVPTASPAPPQLLP 267          
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.870e-24
Identity = 51/76 (67.11%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPRCRP 267
            PPV ST PFLKPAV K  RK KS PKG+K WYLGPA +H RDCVRMLTE  T+I TRNFTWR VP+  P  P+  P
Sbjct:  196 PPVGSTSPFLKPAVFKSRRKAKSQPKGEKGWYLGPAHNHPRDCVRMLTEAGTVITTRNFTWRHVPAASPAPPQLLP 271          
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5JEM4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM4_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.150e-22
Identity = 49/76 (64.47%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPRCRP 267
            PPV S YPFLKPAV K  RK KS PK +K WY GPA +H RDCVRMLTE  T+I TRNFTWR VP+  P  P+  P
Sbjct:    7 PPVGSAYPFLKPAVFKSTRKVKSQPKSEKGWYPGPAHNHPRDCVRMLTEAGTVITTRNFTWRHVPAASPAPPQLLP 82          
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.220e-22
Identity = 47/73 (64.38%), Postives = 54/73 (73.97%), Query Frame = 1
Query:   40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPR 258
            PP  S YPFLKPAV K  R+ KS PKG+K WYLGPA +H RDCVRMLTE  T++ TRNFTWR VP+  P  P+
Sbjct:  928 PPAGSVYPFLKPAVYKARRERKSHPKGRKGWYLGPAHNHPRDCVRMLTEAGTVVTTRNFTWRHVPAVSPVPPQ 1000          
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5JHM6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM6_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.540e-22
Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPRCRP 267
            PP  +TYPFLKPAV K +R  KS PK QKC+YLGP ++ NRDCVR+L E+   I TRNFTW+SVP+TP   P+  P
Sbjct:    7 PPSGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQSVPATPAALPQSLP 82          
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.840e-21
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPR 258
            PP E+TYPFLKPAV K +R  KS PK +KC+YLGP ++ NRDCVR+L E+   I TRNFTW+SVP+ P   P+
Sbjct:    7 PPPEATYPFLKPAVYKVKRTHKSEPKAKKCFYLGPGINTNRDCVRILNEKRQAITTRNFTWQSVPAAPTAHPQ 79          
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5JMU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU6_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.950e-21
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPRCRP 267
            PP  +TYPFLKPAV K +R  KS PK QKC+YLGP +++NRDCVR+L E+   I TRNFTW+SVP+ P   P+  P
Sbjct:  568 PPPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINNNRDCVRILNEKRRAITTRNFTWQSVPAAPAALPQSPP 643          
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5L3E0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E0_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 4.970e-21
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPRCRP 267
            PP  +TYPFLKPAV K +R  KS PK QKC+YLGP ++ NRDCVR+L E+   I TRNFTW+SVP+ P   P+  P
Sbjct:  740 PPPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQSVPAAPAALPQSLP 815          
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5JVW7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW7_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 5.030e-21
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPRCRP 267
            PP  +TYPFLKPAV K +R  KS PK QKC+YLGP ++ NRDCVR+L E+   I TRNFTW+SVP+ P   P+  P
Sbjct:  118 PPPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQSVPAAPAALPQSLP 193          
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 5.030e-21
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPRCRP 267
            PP  +TYPFLKPAV K +R  KS PK QKC+YLGP ++ NRDCVR+L E+   I TRNFTW+SVP+ P   P+  P
Sbjct:  386 PPPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQSVPAAPAALPQSLP 461          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV95_9PHAE5.600e-2668.42Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K293_9PHAE3.870e-2467.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JEM4_9PHAE1.150e-2264.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L175_9PHAE1.220e-2264.38Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHM6_9PHAE3.540e-2260.53Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KGX6_9PHAE1.840e-2160.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMU6_9PHAE1.950e-2159.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3E0_9PHAE4.970e-2159.21Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JVW7_9PHAE5.030e-2159.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE5.030e-2159.21Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:697792..698101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size312
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789584.711767-CDS-P-littoralis_Contig13:697791..6981001680789584.711767-CDS-P-littoralis_Contig13:697791..698100Pylaiella littoralis U1_48CDSP-littoralis_Contig13 697792..698100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.141.1prot_P-littoralis_Contig13.141.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 697792..698100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.141.1

>prot_P-littoralis_Contig13.141.1 ID=prot_P-littoralis_Contig13.141.1|Name=mRNA_P-littoralis_Contig13.141.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
PAENPPTKCGTATPPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPAL
DHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPRCRPQMTGSSPGMTR
TKS
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mRNA from alignment at P-littoralis_Contig13:697792..698101+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.141.1 ID=mRNA_P-littoralis_Contig13.141.1|Name=mRNA_P-littoralis_Contig13.141.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=310bp|location=Sequence derived from alignment at P-littoralis_Contig13:697792..698101+ (Pylaiella littoralis U1_48)
CCGGCCGAAAATCCCCCTACGAAATGTGGAACGGCCACACCCCCGGTCGA ATCGACGTACCCCTTCTTGAAACCTGCTGTCTGCAAGGATGAACGGAAGG ACAAGTCCGGTCCGAAGGGACAAAAATGCTGGTACCTCGGACCGGCGCTT GACCACAACCGCGACTGCGTGCGCATGCTCACTGAACAGCATACCATAAT AATCACTCGCAACTTTACCTGGCGTTCCGTGCCCTCTACCCCCCCCCCTC GCCCGAGATGCCGCCCCCAGATGACGGGGTCCAGTCCTGGGATGACGAGG ACGAAGTCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:697792..698101+

>mRNA_P-littoralis_Contig13.141.1 ID=mRNA_P-littoralis_Contig13.141.1|Name=mRNA_P-littoralis_Contig13.141.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig13:697792..698101+ (Pylaiella littoralis U1_48)
CCGGCCGAAAATCCCCCTACGAAATGTGGAACGGCCACACCCCCGGTCGA
ATCGACGTACCCCTTCTTGAAACCTGCTGTCTGCAAGGATGAACGGAAGG
ACAAGTCCGGTCCGAAGGGACAAAAATGCTGGTACCTCGGACCGGCGCTT
GACCACAACCGCGACTGCGTGCGCATGCTCACTGAACAGCATACCATAAT
AATCACTCGCAACTTTACCTGGCGTTCCGTGCCCTCTACCCCCCCCCCTC
GCCCGAGATGCCGCCCCCAGATGACGGGGTCCAGTCCTGGGATGACGAGG
ACGAAGTCA
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