mRNA_P-littoralis_Contig13.141.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5JV95_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV95_9PHAE) HSP 1 Score: 108 bits (269), Expect = 5.600e-26 Identity = 52/76 (68.42%), Postives = 57/76 (75.00%), Query Frame = 1
Query: 40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPRCRP 267
PPV STYPFLKPAV K RK KS KG+K WYLGPA +H RDCVRMLTE T+IITRNFTWR VP+ P P+ P
Sbjct: 192 PPVRSTYPFLKPAVFKSRRKAKSQIKGEKGWYLGPAYNHPRDCVRMLTEAGTVIITRNFTWRHVPTASPAPPQLLP 267
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE) HSP 1 Score: 105 bits (261), Expect = 3.870e-24 Identity = 51/76 (67.11%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPRCRP 267
PPV ST PFLKPAV K RK KS PKG+K WYLGPA +H RDCVRMLTE T+I TRNFTWR VP+ P P+ P
Sbjct: 196 PPVGSTSPFLKPAVFKSRRKAKSQPKGEKGWYLGPAHNHPRDCVRMLTEAGTVITTRNFTWRHVPAASPAPPQLLP 271
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5JEM4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM4_9PHAE) HSP 1 Score: 100 bits (250), Expect = 1.150e-22 Identity = 49/76 (64.47%), Postives = 54/76 (71.05%), Query Frame = 1
Query: 40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPRCRP 267
PPV S YPFLKPAV K RK KS PK +K WY GPA +H RDCVRMLTE T+I TRNFTWR VP+ P P+ P
Sbjct: 7 PPVGSAYPFLKPAVFKSTRKVKSQPKSEKGWYPGPAHNHPRDCVRMLTEAGTVITTRNFTWRHVPAASPAPPQLLP 82
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE) HSP 1 Score: 100 bits (250), Expect = 1.220e-22 Identity = 47/73 (64.38%), Postives = 54/73 (73.97%), Query Frame = 1
Query: 40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPR 258
PP S YPFLKPAV K R+ KS PKG+K WYLGPA +H RDCVRMLTE T++ TRNFTWR VP+ P P+
Sbjct: 928 PPAGSVYPFLKPAVYKARRERKSHPKGRKGWYLGPAHNHPRDCVRMLTEAGTVVTTRNFTWRHVPAVSPVPPQ 1000
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5JHM6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM6_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 3.540e-22 Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPRCRP 267
PP +TYPFLKPAV K +R KS PK QKC+YLGP ++ NRDCVR+L E+ I TRNFTW+SVP+TP P+ P
Sbjct: 7 PPSGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQSVPATPAALPQSLP 82
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 1.840e-21 Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 1
Query: 40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPR 258
PP E+TYPFLKPAV K +R KS PK +KC+YLGP ++ NRDCVR+L E+ I TRNFTW+SVP+ P P+
Sbjct: 7 PPPEATYPFLKPAVYKVKRTHKSEPKAKKCFYLGPGINTNRDCVRILNEKRQAITTRNFTWQSVPAAPTAHPQ 79
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5JMU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU6_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 1.950e-21 Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPRCRP 267
PP +TYPFLKPAV K +R KS PK QKC+YLGP +++NRDCVR+L E+ I TRNFTW+SVP+ P P+ P
Sbjct: 568 PPPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINNNRDCVRILNEKRRAITTRNFTWQSVPAAPAALPQSPP 643
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5L3E0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E0_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 4.970e-21 Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPRCRP 267
PP +TYPFLKPAV K +R KS PK QKC+YLGP ++ NRDCVR+L E+ I TRNFTW+SVP+ P P+ P
Sbjct: 740 PPPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQSVPAAPAALPQSLP 815
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5JVW7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW7_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 5.030e-21 Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPRCRP 267
PP +TYPFLKPAV K +R KS PK QKC+YLGP ++ NRDCVR+L E+ I TRNFTW+SVP+ P P+ P
Sbjct: 118 PPPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQSVPAAPAALPQSLP 193
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 5.030e-21 Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 40 PPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALDHNRDCVRMLTEQHTIIITRNFTWRSVPSTPPPRPRCRP 267
PP +TYPFLKPAV K +R KS PK QKC+YLGP ++ NRDCVR+L E+ I TRNFTW+SVP+ P P+ P
Sbjct: 386 PPPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQSVPAAPAALPQSLP 461 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig13.141.1 >prot_P-littoralis_Contig13.141.1 ID=prot_P-littoralis_Contig13.141.1|Name=mRNA_P-littoralis_Contig13.141.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp PAENPPTKCGTATPPVESTYPFLKPAVCKDERKDKSGPKGQKCWYLGPALback to top mRNA from alignment at P-littoralis_Contig13:697792..698101+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig13.141.1 ID=mRNA_P-littoralis_Contig13.141.1|Name=mRNA_P-littoralis_Contig13.141.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=310bp|location=Sequence derived from alignment at P-littoralis_Contig13:697792..698101+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig13:697792..698101+ >mRNA_P-littoralis_Contig13.141.1 ID=mRNA_P-littoralis_Contig13.141.1|Name=mRNA_P-littoralis_Contig13.141.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig13:697792..698101+ (Pylaiella littoralis U1_48)back to top |