mRNA_P-littoralis_Contig13.49.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.49.1
Unique NamemRNA_P-littoralis_Contig13.49.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig13.49.1 vs. uniprot
Match: A0A6H5KWV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV2_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 5.270e-31
Identity = 64/115 (55.65%), Postives = 77/115 (66.96%), Query Frame = 1
Query:    1 LRWARRWTVPTAEVPAGGTRRFSGMRNVVCVDEK*FYICNVKQRYYVRDNEPAPSRQVQHKSHITKVMFLGAVARPRRNTTNNTGFDGKIGLYPFTRQEAAQRNSRNRAAETMVT 345
            L WA RW  P+A    G   +F    + + +DEK FYIC   QRYY  + E  P R+VQHKSH+ KVMFL AVARPR +++ +  FDGKIG+YPFT Q AAQRN RN AA TMVT
Sbjct:   34 LSWALRWVRPSA----GDAHKFHHFFDFLHLDEKWFYICKQGQRYYFYEGEHLPIRKVQHKSHVIKVMFLAAVARPRYDSSRSRQFDGKIGIYPFTVQRAAQRNGRNMAAGTMVT 144          
BLAST of mRNA_P-littoralis_Contig13.49.1 vs. uniprot
Match: A0A6A4ZGT3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZGT3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 6.890e-25
Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:   43 PAGGTRRFSGMRNVVCVDEK*FYICNVKQRYYVRDNEPAPSRQVQHKSHITKVMFLGAVARPRRNTTNNTGFDGKIGLYPFTRQEAAQRNSRNRAAETMV 342
            P  G   F  M + V VDEK FY+  VK+RYYV D+E   +R  +HKSHITK+MFL AVARPR +    + FDGKIG++PF ++  A+R+S+NR   T++
Sbjct:   76 PTSGGTTFVNMHDYVHVDEKWFYLTKVKRRYYVYDDEEVAARACKHKSHITKIMFLAAVARPRYDPHTRSFFDGKIGVWPFVQESVAKRSSKNRPRGTVI 175          
BLAST of mRNA_P-littoralis_Contig13.49.1 vs. uniprot
Match: UPI000E6FC8C0 (uncharacterized protein LOC113311561 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FC8C0)

HSP 1 Score: 99.4 bits (246), Expect = 7.600e-23
Identity = 50/91 (54.95%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   73 MRNVVCVDEK*FYICNVKQRYYVRDNEPAPSRQVQHKSHITKVMFLGAVARPRRNTTNNTGFDGKIGLYPFTRQEAAQRNSRNRAAETMVT 345
            M N V +DEK FY+    Q+YY+   E  P R  + K  ITKVMFL  VARPR ++ NN  F GKIG++PFT QE AQRNS+NR A TM T
Sbjct:    1 MYNYVHIDEKWFYMTKESQKYYLLPEEDEPLRSCKSKCFITKVMFLAVVARPRYDSANNEEFSGKIGIFPFTFQEPAQRNSKNRTAGTMET 91          
BLAST of mRNA_P-littoralis_Contig13.49.1 vs. uniprot
Match: UPI000E6FD0CA (uncharacterized protein LOC113359240 n=2 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FD0CA)

HSP 1 Score: 98.6 bits (244), Expect = 2.000e-22
Identity = 50/94 (53.19%), Postives = 60/94 (63.83%), Query Frame = 1
Query:   64 FSGMRNVVCVDEK*FYICNVKQRYYVRDNEPAPSRQVQHKSHITKVMFLGAVARPRRNTTNNTGFDGKIGLYPFTRQEAAQRNSRNRAAETMVT 345
            F  M N V +DEK FY+    Q+YY+   E  P R  + K  ITKVMFL  VARPR ++ NN  F GKIG++ FT QE AQRNS+NR A TM T
Sbjct:  101 FKSMYNYVHIDEKWFYMTKESQKYYLLPKEDEPLRSCKSKRFITKVMFLAVVARPRYDSANNEEFSGKIGIFSFTFQEPAQRNSKNRTAGTMET 194          
BLAST of mRNA_P-littoralis_Contig13.49.1 vs. uniprot
Match: A0A485K9W7_9STRA (Aste57867_2336 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K9W7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.380e-22
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = 1
Query:   46 AGGTRRFSGMRNVVCVDEK*FYICNVKQRYYVRDNEPAPSRQVQHKSHITKVMFLGAVARPRRNTTNNTGFDGKIGLYPFTRQEAAQRNSRNRAAETMV 342
            + G   F+ M + V VDEK F++  VK+RYYV DNE   SR VQ K HITKV+FL A+ARPR +  +   FDGK+G++PF + E AQ +S NR   T +
Sbjct:   47 SNGYHIFTNMYDHVHVDEKWFFLTKVKRRYYVFDNEEVASRAVQSKGHITKVLFLAAIARPRYDCRSKRFFDGKLGVWPFVKVEPAQCSSENRPRGTPI 145          
BLAST of mRNA_P-littoralis_Contig13.49.1 vs. uniprot
Match: A0A024USS9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024USS9_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 5.930e-22
Identity = 49/98 (50.00%), Postives = 65/98 (66.33%), Query Frame = 1
Query:   52 GTRRFSGMRNVVCVDEK*FYICNVKQRYYVRDNEPAPSRQVQHKSHITKVMFLGAVARPRRNTTNNTGFDGKIGLYPFTRQEAAQRNSRNRAAETMVT 345
            GTRR+  M  +V +DEK FYI  V +R+Y+  +E  P R+ Q K HITKVMFL AVARPR ++  +  +DGK GL+PF   + A+R S+NR   T VT
Sbjct:   87 GTRRWHDMMGIVHIDEKLFYITQVNRRFYLWHDEAVPQRKAQSKRHITKVMFLCAVARPRHDSQRHAMWDGKAGLWPFVETKLAKRKSKNRDRGTPVT 184          
BLAST of mRNA_P-littoralis_Contig13.49.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 7.910e-22
Identity = 48/98 (48.98%), Postives = 66/98 (67.35%), Query Frame = 1
Query:   52 GTRRFSGMRNVVCVDEK*FYICNVKQRYYVRDNEPAPSRQVQHKSHITKVMFLGAVARPRRNTTNNTGFDGKIGLYPFTRQEAAQRNSRNRAAETMVT 345
            G R++  M + V +DEK FYI  V +R+Y+  +EP P R+ Q K HITKVMFL AVARPR ++ +   +DGK+GL+PF   + A+R S+NR   T VT
Sbjct:  159 GRRQWHDMLDCVHIDEKWFYITQVNRRFYLWHDEPTPQRKAQSKRHITKVMFLCAVARPRHDSAHRKMWDGKVGLWPFVETQLAKRRSKNRDRGTPVT 256          
BLAST of mRNA_P-littoralis_Contig13.49.1 vs. uniprot
Match: W4GLA0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLA0_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 8.900e-22
Identity = 51/110 (46.36%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   16 RWTVPTAEVPAGGTRRFSGMRNVVCVDEK*FYICNVKQRYYVRDNEPAPSRQVQHKSHITKVMFLGAVARPRRNTTNNTGFDGKIGLYPFTRQEAAQRNSRNRAAETMVT 345
            R+ +P     + G   FS M + V VDEK FY+  VK+RYYV D+E   +R V+ K +ITKVMFLG VARPR        +DGK+G++PF +   A R S+NR   T+VT
Sbjct:  151 RYAMPFVRPLSNGRHSFSNMLDFVHVDEKWFYLTKVKRRYYVYDDEEVAARSVKPKHYITKVMFLGPVARPRYGHHCKKFWDGKVGVWPFVQVSPALRGSKNRRKGTLVT 260          
BLAST of mRNA_P-littoralis_Contig13.49.1 vs. uniprot
Match: UPI0007EEFD65 (uncharacterized protein LOC108203252 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EEFD65)

HSP 1 Score: 94.4 bits (233), Expect = 9.520e-22
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 1
Query:   58 RRFSGMRNVVCVDEK*FYICNVKQRYYVRDNEPAPSRQVQHKSHITKVMFLGAVARPRRNTTNNTGFDGKIGLYPFTRQEAAQRNSRNRAAETM 339
            R + GM ++V +DEK FY+  + Q+ Y+  +EP P R  + K  ITKVMF+ AVARPR +   N  FDGKIG++PFT++E A R S+NRA   M
Sbjct:   21 RTYIGMFSIVHIDEKWFYMTRISQKDYLLPSEPEPHRISKSKRFITKVMFISAVARPRFDNDGNCIFDGKIGIFPFTKEEVAVRTSKNRANGVM 114          
BLAST of mRNA_P-littoralis_Contig13.49.1 vs. uniprot
Match: UPI001D01A7AC (uncharacterized protein LOC123171070 n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D01A7AC)

HSP 1 Score: 97.1 bits (240), Expect = 2.570e-21
Identity = 49/95 (51.58%), Postives = 62/95 (65.26%), Query Frame = 1
Query:   61 RFSGMRNVVCVDEK*FYICNVKQRYYVRDNEPAPSRQVQHKSHITKVMFLGAVARPRRNTTNNTGFDGKIGLYPFTRQEAAQRNSRNRAAETMVT 345
            +F  M NV+ +DEK FY     Q YY+ ++E  P R  Q K+ I KVMFL AVARPR +      FDGK+G++PFT QEAA+R S+NR   TMVT
Sbjct:  120 KFKEMYNVIHIDEKWFYRSRGSQNYYLANDEEDPYRSTQSKNFIEKVMFLAAVARPRFDANGTMIFDGKLGIWPFTYQEAAKRKSKNRDVGTMVT 214          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWV2_9PHAE5.270e-3155.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A4ZGT3_9STRA6.890e-2550.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI000E6FC8C07.600e-2354.95uncharacterized protein LOC113311561 n=1 Tax=Papav... [more]
UPI000E6FD0CA2.000e-2253.19uncharacterized protein LOC113359240 n=2 Tax=Papav... [more]
A0A485K9W7_9STRA2.380e-2249.49Aste57867_2336 protein n=1 Tax=Aphanomyces stellat... [more]
A0A024USS9_9STRA5.930e-2250.00Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6A5AA16_9STRA7.910e-2248.98Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
W4GLA0_9STRA8.900e-2246.36Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI0007EEFD659.520e-2248.94uncharacterized protein LOC108203252 n=1 Tax=Daucu... [more]
UPI001D01A7AC2.570e-2151.58uncharacterized protein LOC123171070 n=1 Tax=Triti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:260856..261200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog161934.XP_010684477.1
PFAMsHTH_Tnp_Tc3_2
Model size346
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.84e-11
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota
Cds size144
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789582.2468815-UTR-P-littoralis_Contig13:260855..2610561680789582.2468815-UTR-P-littoralis_Contig13:260855..261056Pylaiella littoralis U1_48UTRP-littoralis_Contig13 260856..261056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789582.2620854-CDS-P-littoralis_Contig13:261056..2612001680789582.2620854-CDS-P-littoralis_Contig13:261056..261200Pylaiella littoralis U1_48CDSP-littoralis_Contig13 261057..261200 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.49.1prot_P-littoralis_Contig13.49.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 261057..261200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.49.1

>prot_P-littoralis_Contig13.49.1 ID=prot_P-littoralis_Contig13.49.1|Name=mRNA_P-littoralis_Contig13.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=48bp
MFLGAVARPRRNTTNNTGFDGKIGLYPFTRQEAAQRNSRNRAAETMVT
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mRNA from alignment at P-littoralis_Contig13:260856..261200+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.49.1 ID=mRNA_P-littoralis_Contig13.49.1|Name=mRNA_P-littoralis_Contig13.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig13:260856..261200+ (Pylaiella littoralis U1_48)
CTGAGGTGGGCAAGGCGCTGGACTGTTCCCACGGCGGAGGTACCTGCGGG GGGTACTCGCAGGTTCAGTGGGATGAGAAACGTGGTGTGTGTTGACGAGA AGTGATTTTACATCTGCAATGTGAAGCAGAGGTATTACGTGCGCGACAAC GAGCCTGCCCCGAGCCGGCAAGTCCAACACAAGAGCCACATCACCAAGGT GATGTTTCTGGGAGCTGTTGCGCGGCCGAGGCGCAACACCACCAACAACA CCGGTTTCGACGGGAAGATCGGCCTGTATCCGTTCACCAGACAAGAGGCG GCCCAGAGAAACAGCCGGAACAGGGCCGCCGAAACAATGGTTACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:260856..261200+

>mRNA_P-littoralis_Contig13.49.1 ID=mRNA_P-littoralis_Contig13.49.1|Name=mRNA_P-littoralis_Contig13.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=144bp|location=Sequence derived from alignment at P-littoralis_Contig13:260856..261200+ (Pylaiella littoralis U1_48)
ATGTTTCTGGGAGCTGTTGCGCGGCCGAGGCGCAACACCACCAACAACAC
CGGTTTCGACGGGAAGATCGGCCTGTATCCGTTCACCAGACAAGAGGCGG
CCCAGAGAAACAGCCGGAACAGGGCCGCCGAAACAATGGTTACG
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