mRNA_P-littoralis_Contig129.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig129.42.1
Unique NamemRNA_P-littoralis_Contig129.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 6.410e-32
Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARY 1617
            +LLRCIGWKKRER DR LSYAKALITAGC+ESVEATVRKRRLCFAGFVARMRDERLPKIALLGE+QGGARY
Sbjct:  210 FLLRCIGWKKRERKDRPLSYAKALITAGCDESVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARY 280          
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5L6M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M5_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.210e-24
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARYLG 1623
            +L RCIGW KR+R+DR LSYA+ALI AGC E++EATVRKRRLCFAGFV RM D RLPK  LLGEM GG  Y G
Sbjct:   76 FLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGEMAGGGEYRG 148          
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5J747_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J747_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.280e-24
Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARYLG 1623
            +L RCIGW KR+R+DR LSYA+ALI AGC E++EATVRKRRLCFAGFV RM D RLPK  LLG M GG  Y G
Sbjct:   48 FLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRG 120          
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5K5W0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W0_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.460e-23
Identity = 65/122 (53.28%), Postives = 79/122 (64.75%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARYLGKSLTG*GECRRTSKRSTSLSTKKRG--GRQVPRELTSGTTGSTRVRGGS 1764
            +L RCIGW KR+R+DR LSYA+ALI AGC E++EATVRKRRLCFAGFV RM D RLPK  LLG M GG  Y G   +           +++  TK++G  G++ PR    GTT S   R GS
Sbjct:  133 FLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVASTWETKRKGVNGKRAPRTRRCGTTRSRTGRHGS 254          
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5JX67_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX67_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.480e-23
Identity = 51/73 (69.86%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARYLG 1623
            +L RCIGW KR+R+DR LS+A+ALI AGC E++EATVRKRRLCFAGFV RM D RLPK  LLG M GG  Y G
Sbjct:   21 FLTRCIGWSKRKRSDRPLSHAQALIQAGCEETIEATVRKRRLCFAGFVTRMEDNRLPKRMLLGAMAGGVGYRG 93          
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 4.220e-23
Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARYLG 1623
            +L RCIGW KR+R+DR LSYA+ALI AGC E++EATVRKRRLCFAGFV RM D RLPK  LLG M GG  Y G
Sbjct:   48 FLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKHMLLGAMAGGVGYRG 120          
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5L5J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J5_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 2.020e-22
Identity = 52/74 (70.27%), Postives = 60/74 (81.08%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARYLGK 1626
            +L RCIGW KR+R+DR LSYA+ALI AGC E++EATVRKRRLCFAGFV RM+D RLPK  LLG M GG  Y G+
Sbjct:  203 FLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMKDSRLPKRMLLGAMAGGVGYRGR 276          
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.670e-22
Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARYLG 1623
            +L RCIGW KR+R+DR LSYA+ALI AGC E++EATVRKRRLCFAGFV RM D RLPK  LLG M GG  Y G
Sbjct:  133 FLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRG 205          
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5KYA5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYA5_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.040e-22
Identity = 51/73 (69.86%), Postives = 57/73 (78.08%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARYLG 1623
            +L RCIGW KR+R+DR LSYA+ALI AGC E++EATVRKRRLCFAGFV RM D RLPK  L G M GG  Y G
Sbjct:  148 FLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLFGAMAGGVGYRG 220          
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5JCS2_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS2_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.610e-22
Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARYLG 1623
            +L RCIGW KR+R+DR LSYA+ALI AGC E++EATVRKRRLCFAGFV RM D RLPK  LLG M GG  Y G
Sbjct:  152 FLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRG 224          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2J8_9PHAE6.410e-3292.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6M5_9PHAE1.210e-2472.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J747_9PHAE2.280e-2471.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5W0_9PHAE2.460e-2353.28Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX67_9PHAE2.480e-2369.86Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KGF6_9PHAE4.220e-2371.23Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5J5_9PHAE2.020e-2270.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSH7_9PHAE2.670e-2271.23Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYA5_9PHAE3.040e-2269.86Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JCS2_9PHAE3.610e-2271.23Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig129contigP-littoralis_Contig129:121643..124863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2500
Hectar predicted targeting categoryother localisation
Exons3
Cds size585
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789574.7235534-UTR-P-littoralis_Contig129:121642..1235371680789574.7235534-UTR-P-littoralis_Contig129:121642..123537Pylaiella littoralis U1_48UTRP-littoralis_Contig129 121643..123537 -
1680789574.765793-UTR-P-littoralis_Contig129:124843..1248631680789574.765793-UTR-P-littoralis_Contig129:124843..124863Pylaiella littoralis U1_48UTRP-littoralis_Contig129 124844..124863 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789574.7323864-CDS-P-littoralis_Contig129:123537..1237211680789574.7323864-CDS-P-littoralis_Contig129:123537..123721Pylaiella littoralis U1_48CDSP-littoralis_Contig129 123538..123721 -
1680789574.7442894-CDS-P-littoralis_Contig129:123737..1238461680789574.7442894-CDS-P-littoralis_Contig129:123737..123846Pylaiella littoralis U1_48CDSP-littoralis_Contig129 123738..123846 -
1680789574.7543209-CDS-P-littoralis_Contig129:124551..1248431680789574.7543209-CDS-P-littoralis_Contig129:124551..124843Pylaiella littoralis U1_48CDSP-littoralis_Contig129 124552..124843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig129.42.1prot_P-littoralis_Contig129.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig129 123538..124843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig129.42.1

>prot_P-littoralis_Contig129.42.1 ID=prot_P-littoralis_Contig129.42.1|Name=mRNA_P-littoralis_Contig129.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=195bp
MKSSDPPRRAWQKTSQPTFVMNKQNGKGRLRLQYSRGRGHKPKPVTSTQF
PSRKDAELAAFRWRTSWEEGRKGDLADEPQHDSHTEETSASSLVLPQGKS
LHSLGKLCAIQERAYKKQRREGAPRGRYQWMKVKILTLGRLRRFAQRSRD
YCRAYVAHENGGAIESKDKIEQMRKIAKAHRNIIDMEPGFIDKQ*
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mRNA from alignment at P-littoralis_Contig129:121643..124863-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig129.42.1 ID=mRNA_P-littoralis_Contig129.42.1|Name=mRNA_P-littoralis_Contig129.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3221bp|location=Sequence derived from alignment at P-littoralis_Contig129:121643..124863- (Pylaiella littoralis U1_48)
GTCGATGCTTTGCGTACACCATGAAGTCGAGCGATCCACCCAGGCGGGCG TGGCAGAAGACCTCTCAACCGACATTCGTCATGAATAAACAGAACGGGAA GGGCCGCCTGCGTTTGCAGTATTCGCGAGGGCGCGGCCACAAGCCCAAAC CGGTGACGTCAACACAGTTTCCTTCAAGGAAGGACGCGGAGCTGGCAGCC TTTCGGTGGCGCACGAGTTGGGAAGAGGGTCGGAAGGGCGACCTGGCAGA CGAACCACAGCATGACTCACACACTGAGGAGACATCAGCGTCGTCTCTAG TTTTACCCCAAGGCAAGTGTACGTCCGCACCAGTAGTCGACCGACCTGTA CAATTGCTTGAATTTGAAAATGTAATCGTACAGCAGTCTCACACGGGCAG GAATCCTATCCAGCAGCATGACAAGGGCACCTCGTTGCATGCCGCCCCCC CCACTACTGCTGTACGAACGCATCTCTGCTATACATAGCTGCTGCTGCAA TGTGTTTCGCCTGCGCAGTGAGATAGTGTACGAGCTGCTTGCGCACGCGT ACATACTGAGAGTACCTGCTGGTCGAATCCGTATGGATTTTAGAGTGTAA TCGTACAGCAGTCTCACACGGGCAGGAATCCTATCGAGCGGCATGACAAG TGCACCTCGTTGCATGCCAGGCCCCCCACTACTGCTGTACGAACGCATCT CTGCCGTAGCTGCTGCTGCTGCAATGTGTTTCGCCTGCGCAGTGAGATAG TGTACGAGCTGCTTACGCACGCTTACATACTGAGAGTACCTGCCGGTTGA ATCCGTTTGGATCTGAGAGTGTAATCGTACAGCAGTCTCACACGGGCAGG AATCCTATCCAGCAGCATGACAAGTGTCCCTCGTAGATGTAAAGTCATCA CTGCTGTGCAAATGTATCTCAGCTGTGGCGATGTCTGAGAATTAGCGAAT GCTTGAGCAAAAGCACCCTTTTGCTGATTTCCTCCTTACTTTCACAACAA CCCAACATGACCAACAGGTAAATCTTTGCACAGCTTGGGCAAGCTGTGCG CTATCCAGGAGAGAGCGTACAAGAAGCAGCGCCGGGAAGGGGCTCCACGG GGACGCTATCAGTGGATGAAGGTCAAGTTGCTGACGGGAAAGAATTCTTA CGCTGGGGCGGCTGCGCCGCTTCGCACAGCGCAGCCGAGACTACTGCCGG GCGTACGTCGCGCATGAGAACGGGGGGGCGATTGAATCCAAGGACAAAAT CGAGCAGATGCGGAAGATCGCGAAGGCGCACCGCAATATCATTGACATGG AGCCAGGGTTCATCGACAAGCAGTAACTGAGGCGCGGTTTGTGGTTCTAC GTACCTGTACGTACGCATATGTTGTTCGACGAGGACTCGAGCAAAGTACG ATCGAGTATTTATGTACGGACGGGGTGGTGCAAGTGACTACTCGTGCTCG CACTTCGTACGGGCGTACCATCATAAGATGTGTTTCATGCGTGGTGTTTT GTCCTTTACGTACGCGTTTAACATTCGTTCCTTGGTACGATAAGTCGGTC GACTAGGGTAGAATAACGCACGTATCGTATTAATATTAATAGTTGTTTCC CACCCTCTTTTATAACACTTGCTCGGTTAGGCGGCTGCGACATTCAGGAG TTTTCGAGAAATACATTATGCATGGCCTCTGAGGCAATTTTGCTGCTTGC TGGGTGCTCATGGGGATTTTTATCTGCACAGCGCAAATCATGTCTGTTTT CCACTATATTTTGTGTGGTAGTTCGCAACATGCATGTCAACAATCCTATG CGCCTCCATTTTTTTTCCATTTTTTTTTTCATGAGATACTGTAGCTGCGC TATTGTCAACACCCCAAACGCCGTATCGGGCATAATTCTTGAAAAAAAAA AAAGAAATCGGATGTAGACACATAAATGTGTGTGCATATGTCTTTGGCAC CGTCTGTCAAATTTTCATGGGAAACGGATACAAATTGGGTTGTGCACAAG CAACGCACAAAAATCTGAGCCTCTTGGCCGGCCCAGCTCGTATCTGATTT GACTGTAGGCGATCTGTGTCCATTTCTTTTATTTTTTTTCATTTCCCCCT ACAGCAGTACTGCATCATATGATGGTACCTCCTTCGCTGCATCGGATGGA AAAAGAGGGAGAGAACAGACCGACTCCTCTCCTACGCCAAAGCCCTGATC ACCGCGGGTTGCAACGAGAGCGTTGAGGCCACCGTGCGCAAGCGGCGACT GTGCTTCGCAGGATTCGTTGCGCGCATGAGAGACGAGAGACTCCCGAAAA TTGCTCTTTTGGGAGAAATGCAGGGGGGAGCGAGGTATCTGGGCAAGAGT TTGACTGGCTGAGGCGAATGCAGGAGGACCTCGAAGCGTTCGACATCGCT GTCGACAAAAAAGAGGGGTGGGAGGCAAGTGCCAAGAGAGCTGACGAGTG GTACGACAGGATCGACGAGGGTGCGCGGCGGTTCACGGACGAGTGGCTCA AGAAAGAGGGAGACCTAATAGAGACACGTCGACGGAAAAGGGAGAGGGAC GCGGCTGAGAGGCAGGCCTTGACTAAAAGAGGGAGAACGGATGGCAGGGA TAAACGAGAGGAGGAGTACGGGGGGGCACAAGGGCAGCGGGGTAGTGGGG TTGGAGTTGCACAGCACAAGAAGAAGCAGCCCAATGCCAAGCTACGGGGT GGCCGGAGTGGAAAACCTGTAGGGCGGAGTGGTGGTGTAGCTGCTGCCAA AGATGTTGGGCAGAAACAACTGAGTATGGTGGTGCCAGTAGCAGGAGGCA TGAGTGCGACTGAGGAGATCAAGCGTGAACAGGCAGACCTCGTGGCAAGA CACGTTTGCGATTGATTGCATGCCTTTTATTTTATTTTTTATCACCTCAC CCCCCCCCCCGACTTCCGGTACTTCCGATCTTCTTTTCCCTTTTCGTTCC CCTCCTTCCTCTTTGTTTGGCGGCCTGCTTGTTGTGTTTGTCTACGAACT CACTCCCTCAGTCTTTGTGCCCTCCCTGTATCCTCTTCTTTTTTATTTTT ATTTTATTTTTATTTTTTGTCTTTCGTCCGTTGATCATGTAGTTACTGGA CCATCGCCCTGGTTTGCGTTTGCCTTGGTCTGTCATGGCCCTGGGCCCTG GTTCGATGTACGAAGTACTTCGAAGTATATGGTTATGGTTGAGGTTTGTC TTGGTTATTTTTTGTTTGTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig129:121643..124863-

>mRNA_P-littoralis_Contig129.42.1 ID=mRNA_P-littoralis_Contig129.42.1|Name=mRNA_P-littoralis_Contig129.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=585bp|location=Sequence derived from alignment at P-littoralis_Contig129:121643..124863- (Pylaiella littoralis U1_48)
ATGAAGTCGAGCGATCCACCCAGGCGGGCGTGGCAGAAGACCTCTCAACC
GACATTCGTCATGAATAAACAGAACGGGAAGGGCCGCCTGCGTTTGCAGT
ATTCGCGAGGGCGCGGCCACAAGCCCAAACCGGTGACGTCAACACAGTTT
CCTTCAAGGAAGGACGCGGAGCTGGCAGCCTTTCGGTGGCGCACGAGTTG
GGAAGAGGGTCGGAAGGGCGACCTGGCAGACGAACCACAGCATGACTCAC
ACACTGAGGAGACATCAGCGTCGTCTCTAGTTTTACCCCAAGGTAAATCT
TTGCACAGCTTGGGCAAGCTGTGCGCTATCCAGGAGAGAGCGTACAAGAA
GCAGCGCCGGGAAGGGGCTCCACGGGGACGCTATCAGTGGATGAAGGTCA
AAATTCTTACGCTGGGGCGGCTGCGCCGCTTCGCACAGCGCAGCCGAGAC
TACTGCCGGGCGTACGTCGCGCATGAGAACGGGGGGGCGATTGAATCCAA
GGACAAAATCGAGCAGATGCGGAAGATCGCGAAGGCGCACCGCAATATCA
TTGACATGGAGCCAGGGTTCATCGACAAGCAGTAA
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