mRNA_P-littoralis_Contig129.42.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE) HSP 1 Score: 136 bits (342), Expect = 6.410e-32 Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARY 1617
+LLRCIGWKKRER DR LSYAKALITAGC+ESVEATVRKRRLCFAGFVARMRDERLPKIALLGE+QGGARY
Sbjct: 210 FLLRCIGWKKRERKDRPLSYAKALITAGCDESVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARY 280
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5L6M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M5_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.210e-24 Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARYLG 1623
+L RCIGW KR+R+DR LSYA+ALI AGC E++EATVRKRRLCFAGFV RM D RLPK LLGEM GG Y G
Sbjct: 76 FLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGEMAGGGEYRG 148
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5J747_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J747_9PHAE) HSP 1 Score: 109 bits (272), Expect = 2.280e-24 Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARYLG 1623
+L RCIGW KR+R+DR LSYA+ALI AGC E++EATVRKRRLCFAGFV RM D RLPK LLG M GG Y G
Sbjct: 48 FLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRG 120
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5K5W0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W0_9PHAE) HSP 1 Score: 110 bits (275), Expect = 2.460e-23 Identity = 65/122 (53.28%), Postives = 79/122 (64.75%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARYLGKSLTG*GECRRTSKRSTSLSTKKRG--GRQVPRELTSGTTGSTRVRGGS 1764
+L RCIGW KR+R+DR LSYA+ALI AGC E++EATVRKRRLCFAGFV RM D RLPK LLG M GG Y G + +++ TK++G G++ PR GTT S R GS
Sbjct: 133 FLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVASTWETKRKGVNGKRAPRTRRCGTTRSRTGRHGS 254
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5JX67_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX67_9PHAE) HSP 1 Score: 107 bits (268), Expect = 2.480e-23 Identity = 51/73 (69.86%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARYLG 1623
+L RCIGW KR+R+DR LS+A+ALI AGC E++EATVRKRRLCFAGFV RM D RLPK LLG M GG Y G
Sbjct: 21 FLTRCIGWSKRKRSDRPLSHAQALIQAGCEETIEATVRKRRLCFAGFVTRMEDNRLPKRMLLGAMAGGVGYRG 93
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE) HSP 1 Score: 109 bits (272), Expect = 4.220e-23 Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARYLG 1623
+L RCIGW KR+R+DR LSYA+ALI AGC E++EATVRKRRLCFAGFV RM D RLPK LLG M GG Y G
Sbjct: 48 FLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKHMLLGAMAGGVGYRG 120
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5L5J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J5_9PHAE) HSP 1 Score: 110 bits (276), Expect = 2.020e-22 Identity = 52/74 (70.27%), Postives = 60/74 (81.08%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARYLGK 1626
+L RCIGW KR+R+DR LSYA+ALI AGC E++EATVRKRRLCFAGFV RM+D RLPK LLG M GG Y G+
Sbjct: 203 FLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMKDSRLPKRMLLGAMAGGVGYRGR 276
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE) HSP 1 Score: 109 bits (272), Expect = 2.670e-22 Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARYLG 1623
+L RCIGW KR+R+DR LSYA+ALI AGC E++EATVRKRRLCFAGFV RM D RLPK LLG M GG Y G
Sbjct: 133 FLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRG 205
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5KYA5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYA5_9PHAE) HSP 1 Score: 107 bits (268), Expect = 3.040e-22 Identity = 51/73 (69.86%), Postives = 57/73 (78.08%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARYLG 1623
+L RCIGW KR+R+DR LSYA+ALI AGC E++EATVRKRRLCFAGFV RM D RLPK L G M GG Y G
Sbjct: 148 FLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLFGAMAGGVGYRG 220
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Match: A0A6H5JCS2_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS2_9PHAE) HSP 1 Score: 109 bits (272), Expect = 3.610e-22 Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 1405 YLLRCIGWKKRERTDRLLSYAKALITAGCNESVEATVRKRRLCFAGFVARMRDERLPKIALLGEMQGGARYLG 1623
+L RCIGW KR+R+DR LSYA+ALI AGC E++EATVRKRRLCFAGFV RM D RLPK LLG M GG Y G
Sbjct: 152 FLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRG 224 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig129.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig129.42.1 >prot_P-littoralis_Contig129.42.1 ID=prot_P-littoralis_Contig129.42.1|Name=mRNA_P-littoralis_Contig129.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=195bp MKSSDPPRRAWQKTSQPTFVMNKQNGKGRLRLQYSRGRGHKPKPVTSTQFback to top mRNA from alignment at P-littoralis_Contig129:121643..124863- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig129.42.1 ID=mRNA_P-littoralis_Contig129.42.1|Name=mRNA_P-littoralis_Contig129.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3221bp|location=Sequence derived from alignment at P-littoralis_Contig129:121643..124863- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig129:121643..124863- >mRNA_P-littoralis_Contig129.42.1 ID=mRNA_P-littoralis_Contig129.42.1|Name=mRNA_P-littoralis_Contig129.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=585bp|location=Sequence derived from alignment at P-littoralis_Contig129:121643..124863- (Pylaiella littoralis U1_48)back to top |