mRNA_P-littoralis_Contig128.74.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig128.74.1
Unique NamemRNA_P-littoralis_Contig128.74.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig128.74.1 vs. uniprot
Match: A0A6H5KWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWJ0_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.270e-7
Identity = 39/73 (53.42%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:   94 MQQREEKVLSIRSMIQRFRETKPTSRQEREQVRKHRKMNEQLWRARDDGPAEKDDDI---QRNSRESDRPLLP 303
            MQ  EE +LS+RSMIQRFRE KPTSRQEREQ  K     + LW  R++ PA KDD++   Q ++ E+DR   P
Sbjct:    1 MQLGEETMLSVRSMIQRFRENKPTSRQEREQRGK-----QDLWWVREESPAGKDDNVRVVQEHTVENDRLRFP 68
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig128.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWJ0_9PHAE1.270e-753.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig128contigP-littoralis_Contig128:438720..439648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size786
Hectar predicted targeting categoryother localisation
Exons2
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789571.5627103-UTR-P-littoralis_Contig128:438719..4388121680789571.5627103-UTR-P-littoralis_Contig128:438719..438812Pylaiella littoralis U1_48UTRP-littoralis_Contig128 438720..438812 +
1680789571.5937243-UTR-P-littoralis_Contig128:439264..4396481680789571.5937243-UTR-P-littoralis_Contig128:439264..439648Pylaiella littoralis U1_48UTRP-littoralis_Contig128 439265..439648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789571.5714025-CDS-P-littoralis_Contig128:438812..4389291680789571.5714025-CDS-P-littoralis_Contig128:438812..438929Pylaiella littoralis U1_48CDSP-littoralis_Contig128 438813..438929 +
1680789571.5796757-CDS-P-littoralis_Contig128:439072..4392641680789571.5796757-CDS-P-littoralis_Contig128:439072..439264Pylaiella littoralis U1_48CDSP-littoralis_Contig128 439073..439264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig128.74.1prot_P-littoralis_Contig128.74.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig128 438813..439264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig128.74.1

>prot_P-littoralis_Contig128.74.1 ID=prot_P-littoralis_Contig128.74.1|Name=mRNA_P-littoralis_Contig128.74.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MQQREEKVLSIRSMIQRFRETKPTSRQEREQVRKHRKMNEQLWRARDDGP
AEKDDDIQRNSRESDRPLLPDSHHKTMRWAGAEVRSAAKHNSAYLDADNF
DL*
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mRNA from alignment at P-littoralis_Contig128:438720..439648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig128.74.1 ID=mRNA_P-littoralis_Contig128.74.1|Name=mRNA_P-littoralis_Contig128.74.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=929bp|location=Sequence derived from alignment at P-littoralis_Contig128:438720..439648+ (Pylaiella littoralis U1_48)
AACTTATGATATCATATCACATCATAGAAGTACCATGTCATACCGCAATT
TGCAGTCGTTGGTATCGACAATCGACAACCTGACAGAGTCATCATGCAAC
AGAGAGAGGAAAAAGTGCTCTCCATCCGCTCGATGATACAACGTTTCCGG
GAAACCAAGCCCACAAGTCGGCAGGAACGAGAACAAGTGCGAAAGCATCG
GAAAATGAACGTGGGTACAGCAGTCAGTATCTTTTCTCAGTTCACGTGAT
ATCCTTCTTCAAGCTGGGCCGTATTTCAACGATGTATCATACCGGTACAC
CCACCCGACTTCCATTCCCTTGTAAACCGTATGATATGACGCATGGTGTT
CAGGAACAACTTTGGCGGGCGCGTGACGACGGTCCAGCCGAGAAGGACGA
TGACATCCAGCGTAATTCGCGAGAAAGTGATCGACCGCTGTTGCCAGACA
GCCATCACAAGACGATGCGGTGGGCGGGTGCAGAGGTTCGATCTGCAGCA
AAACACAACTCGGCGTACTTGGACGCCGACAATTTTGATCTGTAAGAGAT
TCAAAGAGAACTAGACCGTGACCGACACAGGCGGCCCAAGGTCGCCCCAA
CAACCCAAAAACTAGCACCAACCGACCCTGAAACTACGTACAGTAACCCA
TGTGATATCCCTTAAGCGAGTTCTTGTTCAATACGGAAAGAAAGTTTTCG
CCGAAATTTGGTTCCTCATTTCCGGCAAAAACCAAACTACCTTCATACCT
GGTACATTGGTAAAGCGTAGGCCGTTGTTGCGATGATCATGCCTCATATG
CTCAACAAAACTTAGGCCCTGTGTTAACGAAAGTCGGAAAATCATTATTG
AAATCATTATCATTGTATGATTTCCCGAAAAACCCTTCGAGCCATATTAA
CGAAAGAGCTGAAAAGGCTCTTTGAAGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig128:438720..439648+

>mRNA_P-littoralis_Contig128.74.1 ID=mRNA_P-littoralis_Contig128.74.1|Name=mRNA_P-littoralis_Contig128.74.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig128:438720..439648+ (Pylaiella littoralis U1_48)
ATGCAACAGAGAGAGGAAAAAGTGCTCTCCATCCGCTCGATGATACAACG
TTTCCGGGAAACCAAGCCCACAAGTCGGCAGGAACGAGAACAAGTGCGAA
AGCATCGGAAAATGAACGAACAACTTTGGCGGGCGCGTGACGACGGTCCA
GCCGAGAAGGACGATGACATCCAGCGTAATTCGCGAGAAAGTGATCGACC
GCTGTTGCCAGACAGCCATCACAAGACGATGCGGTGGGCGGGTGCAGAGG
TTCGATCTGCAGCAAAACACAACTCGGCGTACTTGGACGCCGACAATTTT
GATCTGTAA
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