mRNA_P-littoralis_Contig1272.5.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1272.5.1 vs. uniprot
Match: D7FIH5_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH5_ECTSI) HSP 1 Score: 246 bits (629), Expect = 2.500e-70 Identity = 124/209 (59.33%), Postives = 157/209 (75.12%), Query Frame = 1
Query: 1 GGYTTGTYNGVASEGLEDFVALKLDSDGNVEWIWQDGSDEEDIIEACTLTADGNVVLAGFTNGEWLGSQPGTSAIAAVKLDVTDGSVVWDYQAGVTTFYVVAWGAAGRSDGSVVLVGPTEGVWGDEQIGTTDFVAVALDEDGGELWRWQDGAEFSYSAIRGVAALSDGSLVLVGSTTGD*SGTGNEYAEDTDFVVVKLTAGGVLEWTWQ 627
GGY+ GT +GV SEGL DF+A+K DSDG EW WQ+G++++++I C+ TADGNVVL G T G+W + G A+ AVKLDV+DGSV+W YQAGV ++ VV+ GAA R+DGS+V+ G T+G W E G DF +VALDEDG ELWR+QDG+ FS S+ GVAALSDGS+VL G+T GD +GT N A+D F VVKLT GVL+WTWQ
Sbjct: 94 GGYSNGTLSGVVSEGLGDFIAIKFDSDGTEEWRWQEGTEKDEVISTCSKTADGNVVLTGLTQGDWEETNTGLWALVAVKLDVSDGSVIWRYQAGVPSYSVVSRGAASRADGSIVIGGTTDGDWDGELTGYADFFSVALDEDGSELWRFQDGSLFSISSAWGVAALSDGSVVLAGTTDGDYAGT-NAGAQD--FAVVKLTEEGVLDWTWQ 299
BLAST of mRNA_P-littoralis_Contig1272.5.1 vs. uniprot
Match: D7FIH4_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH4_ECTSI) HSP 1 Score: 238 bits (606), Expect = 2.340e-67 Identity = 124/208 (59.62%), Postives = 153/208 (73.56%), Query Frame = 1
Query: 4 GYTTGTYNGVASEGLEDFVALKLDSDGNVEWIWQDGSDEEDIIEACTLTADGNVVLAGFTNGEWLGSQPGTSAIAAVKLDVTDGSVVWDYQAGVTTFYVVAWGAAGRSDGSVVLVGPTEGVWGDEQIGTTDFVAVALDEDGGELWRWQDGAEFSYSAIRGVAALSDGSLVLVGSTTGD*SGTGNEYAEDTDFVVVKLTAGGVLEWTWQ 627
G+ GT NGVASEGL DF+A+K DSDG EW WQDG++ ++ I C+ TADGNVVL G T G+W+ + G A+ AVKLDVTDGSV+W YQAGV + VV+ G+A R+DGS+V+ G T+G W E G TDF VALDEDG ELWR+QDG+ S S+ GVAALSDGS+VL G+T G+ +GT N A+D F VVKLT GVL+WTWQ
Sbjct: 41 GFFNGTLNGVASEGLGDFIAIKFDSDGTEEWRWQDGTEMDEGITTCSKTADGNVVLTGSTLGDWVETNTGLWALVAVKLDVTDGSVIWQYQAGVPSQSVVSRGSASRADGSIVIGGVTDGDWDGELTGFTDFFTVALDEDGSELWRFQDGSLLSSSSAWGVAALSDGSVVLAGTTDGNYAGT-NAGAQD--FAVVKLTEEGVLDWTWQ 245
BLAST of mRNA_P-littoralis_Contig1272.5.1 vs. uniprot
Match: A0A6H5L7T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T2_9PHAE) HSP 1 Score: 243 bits (620), Expect = 2.620e-67 Identity = 122/208 (58.65%), Postives = 153/208 (73.56%), Query Frame = 1
Query: 4 GYTTGTYNGVASEGLEDFVALKLDSDGNVEWIWQDGSDEEDIIEACTLTADGNVVLAGFTNGEWLGSQPGTSAIAAVKLDVTDGSVVWDYQAGVTTFYVVAWGAAGRSDGSVVLVGPTEGVWGDEQIGTTDFVAVALDEDGGELWRWQDGAEFSYSAIRGVAALSDGSLVLVGSTTGD*SGTGNEYAEDTDFVVVKLTAGGVLEWTWQ 627
G+ GT NGV SEGL DF A+K DSDG EW WQDG++++++I C+ TADGNVVL G T G+W+ + G A+ AVKLDVTDGSV+W YQAGV ++ VV+ GAA R+DGS+V+ G T+G W E G DF +VAL+EDG ELWR+QDG+EFS S+ GVAALSDGS+VL G T GD + T A + DF +VKLT GVL+WTWQ
Sbjct: 98 GFYNGTLNGVPSEGLGDFFAIKFDSDGTEEWRWQDGTEKDEVILTCSKTADGNVVLTGMTQGDWVETNTGLWALVAVKLDVTDGSVIWQYQAGVPSYSVVSRGAASRADGSIVIGGSTDGDWDGELTGYADFFSVALNEDGSELWRFQDGSEFSISSAWGVAALSDGSVVLAGVTDGDYAETN---AGEQDFALVKLTEEGVLDWTWQ 302
BLAST of mRNA_P-littoralis_Contig1272.5.1 vs. uniprot
Match: D8LHV1_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV1_ECTSI) HSP 1 Score: 146 bits (368), Expect = 1.000e-32 Identity = 86/189 (45.50%), Postives = 112/189 (59.26%), Query Frame = 1
Query: 37 SEGLEDFVALKLDSDGNVEWIWQDGSDEEDIIEACTLTADGNVVLAGFTNGEWLGSQPGTSA-IAAVKLDVTDGSVVWDYQAGVTTFYVVAWGAAGRSDGSVVLVGPTEG--VWGDEQIGTTDFVAVALDEDGGELWRWQDGAEFSYSAIRGVAALSDGSLVLVGSTTGD*SGTGNEYAEDTDFVVVKL 594
S G DFVA+KLDS G W WQDG+ D I+A T DG VVLAG+T GEW G G AAVKLD +G+ VW +Q G Y V + + + DG+V+L G T G V D+++G++D V L DG E+WRW+ G+ +RG+AA SDG +V+VGS G G N +ED F+VV L
Sbjct: 185 SVGSLDFVAIKLDSGGTTLWTWQDGTSSSDEIQAAAATGDGFVVLAGYTFGEWSGGLTGEECDFAAVKLDA-NGTEVWRWQGGYEVEYNVIYAVSVQEDGTVLLAGRTGGSQVMSDKRVGSSDIATVMLGADGQEIWRWKQGSSSDDFMLRGMAAGSDGRMVMVGSINGSWGGEPNLGSED--FLVVLL 370
BLAST of mRNA_P-littoralis_Contig1272.5.1 vs. uniprot
Match: D7FXY5_ECTSI (von Willebrand factor type D domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY5_ECTSI) HSP 1 Score: 140 bits (353), Expect = 7.570e-32 Identity = 90/211 (42.65%), Postives = 114/211 (54.03%), Query Frame = 1
Query: 4 GYTTGTYNGVASEGLEDFVALKLDS-DGNVEWIWQDGSDEEDIIEACTLTADGN-VVLAGFTNGEWLGSQPGTSA-IAAVKLDVTDGSVVWDYQAGVTTFYVVAWGAAGRSDGSVVLVGPTEGVWGDEQIGTTDFVAVALDEDGGELWRWQDGAEFSYSAIRGVAALSDGSLVLVGSTTGD*SGTGNEYAEDTDFVVVKLTAGGVLEWTWQ 627
G+T G ++G AS G DFVA+ + S DG+ W WQDG++E+D++ G+ VVLAG T G+W + G AAVKL+ DGS +W +Q G + + AA D +VVL G TEG G + G TD V LD DGG LWRWQ G S A DGS+V+ G T G G+ ED D VVVKL G W WQ
Sbjct: 113 GFTKGGWDGAASAGGSDFVAVSVASGDGSQLWSWQDGTEEDDVLMGVVERGGGSAVVLAGRTGGDWADANAGEGTDFAAVKLEAGDGSEIWRFQDGSSGDDTLKSVAAAEDD-TVVLAGYTEGSLGGDNAGETDCAVVKLDADGGVLWRWQGGTAES-DVCSAAAVAEDGSIVVAGYTVGSWGGSEANAGED-DLVVVKLDKDGNELWHWQ 320
BLAST of mRNA_P-littoralis_Contig1272.5.1 vs. uniprot
Match: A0A6H5JF09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF09_9PHAE) HSP 1 Score: 138 bits (348), Expect = 9.070e-31 Identity = 92/211 (43.60%), Postives = 114/211 (54.03%), Query Frame = 1
Query: 4 GYTTGTYNGVASEGLEDFVALKLDS-DGNVEWIWQDGSDEEDIIEACTLTADGN-VVLAGFTNGEWLGSQPGTSA-IAAVKLDVTDGSVVWDYQAGVTTFYVVAWGAAGRSDGSVVLVGPTEGVWGDEQIGTTDFVAVALDEDGGELWRWQDGAEFSYSAIRGVAALSDGSLVLVGSTTGD*SGTGNEYAEDTDFVVVKLTAGGVLEWTWQ 627
G+T G +NG AS G DFVA+ L S DG+ W WQDG++E+D++ G+ VVLAG T G+W + G AAVKL+ DGS +W +Q G + + AA D +VVL G T+G G G TD V LD DGG LWRWQ G S V A DGS+VL G T G G+ E+ D VVVKL G W WQ
Sbjct: 60 GFTKGGWNGAASAGGSDFVAVSLASGDGSRLWSWQDGTEEDDVLVGLVERGGGSAVVLAGRTGGDWADANAGEGTDFAAVKLEAGDGSEIWRFQDGSSGDDTLKSVAAAEDD-TVVLAGYTDGSLGGVNAGETDCTVVKLDADGGVLWRWQGGTAESDVCSATVVA-EDGSIVLAGYTVGSWDGSEANAGEE-DLVVVKLDKDGNELWHWQ 267
BLAST of mRNA_P-littoralis_Contig1272.5.1 vs. uniprot
Match: D7G371_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G371_ECTSI) HSP 1 Score: 103 bits (258), Expect = 1.530e-20 Identity = 67/168 (39.88%), Postives = 86/168 (51.19%), Query Frame = 1
Query: 40 EGLEDFVALKLDSDGNVEWIWQDGSDEEDIIEACTLTADGNVVLAGFTNGEWLGSQPGTSAIAAVKLDVTDGSVVWDYQAGVTTFYVVAWGAAGRSDGSVVLVGPTEGVWGDEQIG---TTDFVAVALDEDGGELWRWQDGAEFSYSAIRGVAALSDGSLVLVGSTTG 534
+G DF A KLDS GNV W WQ +D + + + D + +L G T G + G+ G + AVKLD G+ VW +Q G VV A DGS VL G T G W + + DF AV L DG E+WRWQDG + G A DGS+VL G++ G
Sbjct: 44 DGGTDFAACKLDSSGNVTWRWQATTDGLNAVSSIAPAND-SFILGGRTTGNFNGTSAGGTDFVAVKLD-DSGTEVWRWQDGTVQDDVVE-AVAHSDDGSAVLAGHTYGSWSSDNADGSFSKDFAAVMLSSDGKEIWRWQDGTTED-DTLEGAAIQEDGSVVLSGNSGG 207
BLAST of mRNA_P-littoralis_Contig1272.5.1 vs. uniprot
Match: A0A6H5LJ25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ25_9PHAE) HSP 1 Score: 105 bits (261), Expect = 2.920e-20 Identity = 67/164 (40.85%), Postives = 85/164 (51.83%), Query Frame = 1
Query: 52 DFVALKLDSDGNVEWIWQDGSDEEDIIEACTLTADGNVVLAGFTNGEWLGSQPGTSAIAAVKLDVTDGSVVWDYQAGVTTFYVVAWGAAGRSDGSVVLVGPTEGVWGDEQIG---TTDFVAVALDEDGGELWRWQDGAEFSYSAIRGVAALSDGSLVLVGSTTG 534
DF A KLDS GNV W WQ +D D + + A+G+ VL G T G++ G+ G + AVKLD G+ VW +Q G V DGS VL G T G W + + DF AV L DG E+WRWQDG + G A DGS+VL G++ G
Sbjct: 174 DFAACKLDSSGNVTWRWQATTDGLDAVSSIA-PANGSFVLGGRTTGDFNGTSAGGTDFVAVKLD-DSGTEVWRWQDGTAEDDFVE-AVVHSDDGSAVLAGHTYGSWSSDNADGSFSKDFAAVMLSSDGKEIWRWQDGTTED-DTLEGAAIQGDGSVVLSGNSGG 333
BLAST of mRNA_P-littoralis_Contig1272.5.1 vs. uniprot
Match: D8LRE9_ECTSI (Transmembrane receptor kinase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE9_ECTSI) HSP 1 Score: 105 bits (263), Expect = 7.030e-20 Identity = 70/206 (33.98%), Postives = 104/206 (50.49%), Query Frame = 1
Query: 4 GYTTGTYNGVASEGLEDFVALKLDSDGNVEWIWQDGSDEEDIIEACTLTADGNVVLAGFTNGEWLGSQPGTSA-IAAVKLDVTDGSVVWDYQAGVTTFYVVAWGAAGRSDGSVVLVGPTEGVWGDEQ------IGTTDFVAVALDEDGGELWRWQDGAEFSYSAIRGVAALSDGSLVLVGSTTGD*SGTGNEYAEDTDFVVVKLTA 600
G T+G ++G+ S G DF+A+KLD++GN W WQDG+ D +EA T DG AAVK+D +G+ VW +Q G Y A + DG+V+L G + GD +G ++ AV L DG E+WRW+ + +RG+AA S+G +++VG+T G G N +ED V+ T+
Sbjct: 3 GQTSGDFSGI-SVGSNDFIAIKLDAEGNELWTWQDGTSGGDFVEAAAATGDGXXXXXXXXXXXXXXXXXXXXXDFAAVKIDA-NGTEVWRWQGGYAVQYNGMHAVAVQEDGTVLLTGRS----GDYNAVAVSGVGASEIAAVMLGVDGEEVWRWKQASSPDVFQVRGMAAGSNGRMLMVGNTNGSWIGDPNLGSEDFLLVMFNTTS 202
BLAST of mRNA_P-littoralis_Contig1272.5.1 vs. uniprot
Match: A0A6H5JLD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD3_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 1.970e-17 Identity = 83/201 (41.29%), Postives = 100/201 (49.75%), Query Frame = 1
Query: 52 DFVALKLDSD-GNVEWIWQDGSDE-EDIIEACTLTADGNVVLAGFTNGEWLGSQ-PGTSAIAAVKLDVTDGSVVWDYQAGVTTF----YVVAW--GAAGRSDGSVVLVGPTEG--VWGDEQIGTTDFVAVALDE-DGGELWRWQDGAEFSYSAIRGVAALSDGSLVLVGSTTGD*SGTGNEYAEDTDFVVVKLTA--GGVL 612
DF A+KLD D G W W D S + D + + + NV+L GFTNGEW S G IAAVKLD G+ VW YQA +T Y V++ G A S VLVG T V G G DF A+ LD GGELWR Q G F+ + G S G LV G NE A + +F+VVKL+ G VL
Sbjct: 62 DFSAVKLDGDSGETLWTWVDSSLQGADWMTSAGADSASNVILGGFTNGEWGTSNLDGLRDIAAVKLDGEAGTEVWRYQAAASTSSFGGYGVSYVLGVAVDSTDHPVLVGTTYNNLVDGVGVPGDWDFFAIKLDGMTGGELWRVQGGVAFTREGLLGAKVDSSGDLVAAGYAA-------NEDASELNFLVVKLSGSDGSVL 255 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1272.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1272.5.1 >prot_P-littoralis_Contig1272.5.1 ID=prot_P-littoralis_Contig1272.5.1|Name=mRNA_P-littoralis_Contig1272.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=180bp GGYTTGTYNGVASEGLEDFVALKLDSDGNVEWIWQDGSDEEDIIEACTLTback to top mRNA from alignment at P-littoralis_Contig1272:18098..22207- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1272.5.1 ID=mRNA_P-littoralis_Contig1272.5.1|Name=mRNA_P-littoralis_Contig1272.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4110bp|location=Sequence derived from alignment at P-littoralis_Contig1272:18098..22207- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1272:18098..22207- >mRNA_P-littoralis_Contig1272.5.1 ID=mRNA_P-littoralis_Contig1272.5.1|Name=mRNA_P-littoralis_Contig1272.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=540bp|location=Sequence derived from alignment at P-littoralis_Contig1272:18098..22207- (Pylaiella littoralis U1_48)back to top |