mRNA_P-littoralis_Contig126.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig126.13.1
Unique NamemRNA_P-littoralis_Contig126.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig126.13.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K)

HSP 1 Score: 345 bits (885), Expect = 1.620e-115
Identity = 171/262 (65.27%), Postives = 204/262 (77.86%), Query Frame = 1
Query:    1 MALRHRKLRVEANPSCFDLSTLLEPVLSRFPNLIYVGIWYHDGKVLLYIQNDQNMSALTLGEQVEKAHVDIVDISSYSTTEGELQEEWRSKLVRAKKSIAVNAGTTAVFVHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTTAPKEEAYDEIL*ILVQKTQEAVNKFTGKIPPCYIDHFEKYAEGILDYKDCPVPEQRKLYERRRNKVLNNIAVSVNERLSRLSSWSGK 786
            MALR+RKL + AN SCFDLST+LE V ++ P LIY+GIWY DG V +Y+Q  + MS   L + +E  H+ IV IS+Y    GELQEEWR+K VR  K + V A TTAVFV+PLGKESLQHITS++VADLL+PLPG+DVFYKFGLKLYSL QN+NFRARKG K AR+CCSR GW T P++EAYDEIL ILV+KT+EAV+ F   IP  Y DHF+ Y++ IL +KD  VPEQRKLYERRRNKVLNNIAVSV + L R+  WS K
Sbjct:   99 MALRNRKLAIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDTMLTKALE-GHMVIVHISTYDAPVGELQEEWRAKPVRGNKKVEVKADTTAVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDK 359          
BLAST of mRNA_P-littoralis_Contig126.13.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI)

HSP 1 Score: 336 bits (861), Expect = 2.680e-113
Identity = 165/262 (62.98%), Postives = 202/262 (77.10%), Query Frame = 1
Query:    1 MALRHRKLRVEANPSCFDLSTLLEPVLSRFPNLIYVGIWYHDGKVLLYIQNDQNMSALTLGEQVEKAHVDIVDISSYSTTEGELQEEWRSKLVRAKKSIAVNAGTTAVFVHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTTAPKEEAYDEIL*ILVQKTQEAVNKFTGKIPPCYIDHFEKYAEGILDYKDCPVPEQRKLYERRRNKVLNNIAVSVNERLSRLSSWSGK 786
            M LR+RKL + AN SCFDLST+LE V ++ P LIY+GIWY DG V +Y+Q  + MS + L + +E  H+ I  IS+Y    GELQEEWR+K VR  K I + + TTAVFV+PLGKESL+HI+ ++VADLL+PLPG+DVFYKFGLKLYSL QN+NFRARKG K AR+CCSR GW T P++EAYDEIL ILV+KT+EAV+ F   IP  Y DHF+ +++ IL YKD  VPEQRKLYERRRNKVLNNIAVSV + L R+  WS K
Sbjct:    1 MVLRNRKLVIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDIMLTKALE-GHMVIEHISTYDAPGGELQEEWRAKPVRGNKKIEIKSDTTAVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMHSDSILAYKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDK 261          
BLAST of mRNA_P-littoralis_Contig126.13.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE)

HSP 1 Score: 294 bits (752), Expect = 4.720e-97
Identity = 156/262 (59.54%), Postives = 183/262 (69.85%), Query Frame = 1
Query:    1 MALRHRKLRVEANPSCFDLSTLLEPVLSRFPNLIYVGIWYHDGKVLLYIQNDQNMSALTLGEQVEKAHVDIVDISSYSTTEGELQEEWRSKLVRAKKSIAVNAGTTAVFVHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTTAPKEEAYDEIL*ILVQKTQEAVNKFTGKIPPCYIDHFEKYAEGILDYKDCPVPEQRKLYERRRNKVLNNIAVSVNERLSRLSSWSGK 786
            MALR+RKL V AN SCFDL T+LE V ++ P LIY+GIWY DG V +Y Q  + MS + L + +E  H+   DIS++     E QEEWR+K V   K I V A TTAVFVHPLGKESLQH TSDF+ADLL+PLPG+DVF KFGLKLYSL QN+NFR RKG K AR+CCSR GW T P+EEAYDEIL ILV+KT+EAV+                    IL YKD   PEQRKLYERRR  +LNNIAVSV + + R+S WS K
Sbjct:    1 MALRNRKLAVRANLSCFDLITILESVRTQCPKLIYLGIWYRDGFVYVYAQGAERMSDIMLAKALE-GHIVFTDISTFDAPISEPQEEWRAKPVCGNKKIEVKANTTAVFVHPLGKESLQHATSDFIADLLRPLPGIDVFNKFGLKLYSLHQNINFRVRKGDKNARVCCSRKGWITVPREEAYDEILQILVKKTREAVSI-------------------ILAYKDSAFPEQRKLYERRR--ILNNIAVSVTDNMRRMSGWSDK 240          
BLAST of mRNA_P-littoralis_Contig126.13.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 1.530e-76
Identity = 135/264 (51.14%), Postives = 175/264 (66.29%), Query Frame = 1
Query:    1 MALRHRKLRVEANPSCFDLSTLLEPVLSRFPNLIYVGIWYHDGKVLLYIQNDQNMSALTLGE--QVEKAHVDIVDISSYSTTEGELQEEWRSKLVRAKKSIAVNAGTTAVFVHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTTAPKEEAYDEIL*ILVQKTQEAVNKFTGKIPPCYIDHFEKYAEGILDYKDCPVPEQRKLYERRRNKVLNNIAVSVNERLSRLSSWSGK 786
            MA RHRKL V A PSC DL  LLEPV++  P L+ + I +HDG+V  Y+QN + +S   L    Q+ + H+D+  IS YS  EGELQEEWR K  RA  S    A T  + V+PLG+ESLQHIT ++V DLLK    + VF+KFGLKLYSL QNVNFR RK     R+  +++ W T  K+EAYDEIL +LV+KT EAV  +   +    ++HF  +   +L+ +D  VPE++KLYE+RRNK L+ IAVSVN RLS+L  W GK
Sbjct:    1 MAPRHRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRAS-STGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVR-TKDKWITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGRWRGK 262          
BLAST of mRNA_P-littoralis_Contig126.13.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 1.180e-69
Identity = 130/258 (50.39%), Postives = 170/258 (65.89%), Query Frame = 1
Query:   19 KLRVEANPSCFDLSTLLEPVLSRFPNLIYVGIWYHDGKVLLYIQNDQNMSALTLGE--QVEKAHVDIVDISSYSTTEGELQEEWRSKLVRAKKSIAVNAGTTAVFVHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTTAPKEEAYDEIL*ILVQKTQEAVNKFTGKIPPCYIDHFEKYAEGILDYKDCPVPEQRKLYERRRNKVLNNIAVSVNERLSRLSSWSGK 786
            KL V A PSC DL  LLEPV++  P L+ + I +HDG+V  Y+QN + +S   L    Q+ + H+D+  IS YS  EGELQEEWR K  RA  S    A T  + V+PLG+ESLQHIT ++V DLLK    + VF+KFGLKLYSL QNVNFR RK     R+  +++ W T  K+EAYDEIL +LV+KT EAV  +   +    ++HF  +   +L+ +D PVPE++KLYE+ RNK L+ IAVSVN RLS+L  W GK
Sbjct: 2135 KLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRAS-STGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVR-TKDKWITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGRWRGK 2390          
BLAST of mRNA_P-littoralis_Contig126.13.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 2.760e-60
Identity = 119/258 (46.12%), Postives = 149/258 (57.75%), Query Frame = 1
Query:    1 MALRHRKLRVEANPSCFDLSTLLEPVLSRFPNLIYVGIWYHDGKVLLYIQNDQNMSALTLGEQVEKAHVDIVDISSYSTTEGELQEEWRSKLVRAKKSIAVNAGTTAVFVHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTTAPKEEAYDEIL*ILVQKTQEAVNKFTGKIPPCYIDHFEKYAEGILDYKDCPVPEQRKLYERRRNKVLNNIAVSVNERLSRLSS 774
            +A+ HRKLRV+A+PSCFDLST+LEPV + +PNLIY+GIW+HDG V +Y+Q+ + MS + L   + K H+ I +I+ YS             L    +S               G   L+     F+ADLL  L G+DVFYKFG+KLY LEQNVNFRARKG K+                                     +G +P C+IDHFEK AE ILD KD  VPEQRKLYER RNKVLNNIAV+V + LSRLS+
Sbjct:    6 VAVHHRKLRVQADPSCFDLSTVLEPVRTEYPNLIYLGIWFHDGSVYVYVQSAERMSDIKLTSAL-KDHMVITNIAPYSIP----------LLGSCNRS---------------GDPRLE-----FIADLLNTLHGVDVFYKFGIKLYVLEQNVNFRARKGDKRV------------------------------------SGVLPSCHIDHFEKPAESILDSKDSLVPEQRKLYERMRNKVLNNIAVNVTDNLSRLSN 196          
BLAST of mRNA_P-littoralis_Contig126.13.1 vs. uniprot
Match: A0A6H5JWA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA4_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.670e-15
Identity = 58/168 (34.52%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  298 AVNAGTTAVFVHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRA--RKGCKKARLCCSRNGWTTAPKEEAYDEIL*ILVQKTQEAVNKFTGKIPPCYIDHFE---KYAEGILDYKDCPVPEQRKLYERRRNKVLNNIAVSVNERLSRLSSWSGK 786
            A     T V V+P+GKESL HIT + + +LL    G DV ++FG KLY+LE+N+NF+   + G    RL    + W T  K   +  +L  L    +EAV  +  KIP   +++FE    Y   I D ++  +P  RK      N + +N+A    E+L R+   +GK
Sbjct:  122 AEKTAVTLVIVNPIGKESLDHITPELIQELLAGHHGPDVIFRFGAKLYALEENMNFKTDVKSGFISGRLE-EDSAWVTQRKTVGFSMLLENLKDNFEEAVQTYVDKIPYDDVENFELDMSYIRKIFDLQE-DMPVYRKFIRDGFNVLASNMA----EKLRRIERDTGK 283          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig126.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Q8QN59_ESV1K1.620e-11565.27EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LP42_ECTSI2.680e-11362.98EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K0V6_9PHAE4.720e-9759.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC66_9PHAE1.530e-7651.14Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JH58_9PHAE1.180e-6950.39Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K135_9PHAE2.760e-6046.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWA4_9PHAE1.670e-1534.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig126contigP-littoralis_Contig126:29296..30081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size786
Hectar predicted targeting categoryother localisation
Exons1
Cds size561
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789553.9165492-UTR-P-littoralis_Contig126:29295..295201680789553.9165492-UTR-P-littoralis_Contig126:29295..29520Pylaiella littoralis U1_48UTRP-littoralis_Contig126 29296..29520 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789553.9298215-CDS-P-littoralis_Contig126:29520..300811680789553.9298215-CDS-P-littoralis_Contig126:29520..30081Pylaiella littoralis U1_48CDSP-littoralis_Contig126 29521..30081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig126.13.1prot_P-littoralis_Contig126.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig126 29521..30081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig126.13.1

>prot_P-littoralis_Contig126.13.1 ID=prot_P-littoralis_Contig126.13.1|Name=mRNA_P-littoralis_Contig126.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=187bp
MALRHRKLRVEANPSCFDLSTLLEPVLSRFPNLIYVGIWYHDGKVLLYIQ
NDQNMSALTLGEQVEKAHVDIVDISSYSTTEGELQEEWRSKLVRAKKSIA
VNAGTTAVFVHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLE
QNVNFRARKGCKKARLCCSRNGWTTAPKEEAYDEIL*
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mRNA from alignment at P-littoralis_Contig126:29296..30081-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig126.13.1 ID=mRNA_P-littoralis_Contig126.13.1|Name=mRNA_P-littoralis_Contig126.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=786bp|location=Sequence derived from alignment at P-littoralis_Contig126:29296..30081- (Pylaiella littoralis U1_48)
ATGGCGCTGCGTCACAGGAAGCTCAGGGTGGAGGCGAACCCATCGTGCTT TGACTTGAGCACCTTGCTGGAACCTGTCCTTTCGAGGTTTCCGAATCTCA TATACGTTGGGATCTGGTATCACGACGGTAAAGTGCTTCTCTACATACAA AACGATCAGAACATGTCAGCTCTCACGCTCGGCGAACAAGTAGAGAAGGC ACATGTAGACATTGTTGATATCTCGTCGTATTCTACTACGGAAGGCGAGC TGCAAGAGGAGTGGCGATCCAAGCTAGTTCGCGCAAAGAAGAGCATTGCC GTCAACGCCGGTACTACTGCTGTATTTGTGCACCCCCTCGGCAAGGAGTC TCTGCAACACATCACGAGTGATTTCGTCGCGGATTTGCTGAAACCCCTTC CTGGACTCGATGTCTTCTACAAATTTGGGTTAAAGCTGTACTCGTTAGAG CAAAACGTAAACTTTCGGGCACGCAAAGGGTGCAAGAAGGCCAGGTTGTG TTGCAGCCGCAATGGATGGACAACCGCCCCAAAGGAAGAGGCATACGACG AGATCCTGTAAATCCTTGTGCAGAAGACCCAGGAAGCTGTAAACAAGTTC ACCGGGAAAATCCCGCCTTGCTACATCGATCATTTCGAGAAGTACGCAGA GGGCATCCTTGACTACAAGGACTGCCCCGTTCCCGAGCAGAGGAAGTTGT ACGAGAGAAGGAGGAACAAAGTGCTGAACAATATCGCTGTCAGCGTAAAC GAGAGGTTGAGCCGGTTGAGTAGCTGGAGCGGCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig126:29296..30081-

>mRNA_P-littoralis_Contig126.13.1 ID=mRNA_P-littoralis_Contig126.13.1|Name=mRNA_P-littoralis_Contig126.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=561bp|location=Sequence derived from alignment at P-littoralis_Contig126:29296..30081- (Pylaiella littoralis U1_48)
ATGGCGCTGCGTCACAGGAAGCTCAGGGTGGAGGCGAACCCATCGTGCTT
TGACTTGAGCACCTTGCTGGAACCTGTCCTTTCGAGGTTTCCGAATCTCA
TATACGTTGGGATCTGGTATCACGACGGTAAAGTGCTTCTCTACATACAA
AACGATCAGAACATGTCAGCTCTCACGCTCGGCGAACAAGTAGAGAAGGC
ACATGTAGACATTGTTGATATCTCGTCGTATTCTACTACGGAAGGCGAGC
TGCAAGAGGAGTGGCGATCCAAGCTAGTTCGCGCAAAGAAGAGCATTGCC
GTCAACGCCGGTACTACTGCTGTATTTGTGCACCCCCTCGGCAAGGAGTC
TCTGCAACACATCACGAGTGATTTCGTCGCGGATTTGCTGAAACCCCTTC
CTGGACTCGATGTCTTCTACAAATTTGGGTTAAAGCTGTACTCGTTAGAG
CAAAACGTAAACTTTCGGGCACGCAAAGGGTGCAAGAAGGCCAGGTTGTG
TTGCAGCCGCAATGGATGGACAACCGCCCCAAAGGAAGAGGCATACGACG
AGATCCTGTAA
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