mRNA_P-littoralis_Contig126.13.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig126.13.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K) HSP 1 Score: 345 bits (885), Expect = 1.620e-115 Identity = 171/262 (65.27%), Postives = 204/262 (77.86%), Query Frame = 1
Query: 1 MALRHRKLRVEANPSCFDLSTLLEPVLSRFPNLIYVGIWYHDGKVLLYIQNDQNMSALTLGEQVEKAHVDIVDISSYSTTEGELQEEWRSKLVRAKKSIAVNAGTTAVFVHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTTAPKEEAYDEIL*ILVQKTQEAVNKFTGKIPPCYIDHFEKYAEGILDYKDCPVPEQRKLYERRRNKVLNNIAVSVNERLSRLSSWSGK 786
MALR+RKL + AN SCFDLST+LE V ++ P LIY+GIWY DG V +Y+Q + MS L + +E H+ IV IS+Y GELQEEWR+K VR K + V A TTAVFV+PLGKESLQHITS++VADLL+PLPG+DVFYKFGLKLYSL QN+NFRARKG K AR+CCSR GW T P++EAYDEIL ILV+KT+EAV+ F IP Y DHF+ Y++ IL +KD VPEQRKLYERRRNKVLNNIAVSV + L R+ WS K
Sbjct: 99 MALRNRKLAIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDTMLTKALE-GHMVIVHISTYDAPVGELQEEWRAKPVRGNKKVEVKADTTAVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDK 359
BLAST of mRNA_P-littoralis_Contig126.13.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI) HSP 1 Score: 336 bits (861), Expect = 2.680e-113 Identity = 165/262 (62.98%), Postives = 202/262 (77.10%), Query Frame = 1
Query: 1 MALRHRKLRVEANPSCFDLSTLLEPVLSRFPNLIYVGIWYHDGKVLLYIQNDQNMSALTLGEQVEKAHVDIVDISSYSTTEGELQEEWRSKLVRAKKSIAVNAGTTAVFVHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTTAPKEEAYDEIL*ILVQKTQEAVNKFTGKIPPCYIDHFEKYAEGILDYKDCPVPEQRKLYERRRNKVLNNIAVSVNERLSRLSSWSGK 786
M LR+RKL + AN SCFDLST+LE V ++ P LIY+GIWY DG V +Y+Q + MS + L + +E H+ I IS+Y GELQEEWR+K VR K I + + TTAVFV+PLGKESL+HI+ ++VADLL+PLPG+DVFYKFGLKLYSL QN+NFRARKG K AR+CCSR GW T P++EAYDEIL ILV+KT+EAV+ F IP Y DHF+ +++ IL YKD VPEQRKLYERRRNKVLNNIAVSV + L R+ WS K
Sbjct: 1 MVLRNRKLVIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDIMLTKALE-GHMVIEHISTYDAPGGELQEEWRAKPVRGNKKIEIKSDTTAVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMHSDSILAYKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDK 261
BLAST of mRNA_P-littoralis_Contig126.13.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE) HSP 1 Score: 294 bits (752), Expect = 4.720e-97 Identity = 156/262 (59.54%), Postives = 183/262 (69.85%), Query Frame = 1
Query: 1 MALRHRKLRVEANPSCFDLSTLLEPVLSRFPNLIYVGIWYHDGKVLLYIQNDQNMSALTLGEQVEKAHVDIVDISSYSTTEGELQEEWRSKLVRAKKSIAVNAGTTAVFVHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTTAPKEEAYDEIL*ILVQKTQEAVNKFTGKIPPCYIDHFEKYAEGILDYKDCPVPEQRKLYERRRNKVLNNIAVSVNERLSRLSSWSGK 786
MALR+RKL V AN SCFDL T+LE V ++ P LIY+GIWY DG V +Y Q + MS + L + +E H+ DIS++ E QEEWR+K V K I V A TTAVFVHPLGKESLQH TSDF+ADLL+PLPG+DVF KFGLKLYSL QN+NFR RKG K AR+CCSR GW T P+EEAYDEIL ILV+KT+EAV+ IL YKD PEQRKLYERRR +LNNIAVSV + + R+S WS K
Sbjct: 1 MALRNRKLAVRANLSCFDLITILESVRTQCPKLIYLGIWYRDGFVYVYAQGAERMSDIMLAKALE-GHIVFTDISTFDAPISEPQEEWRAKPVCGNKKIEVKANTTAVFVHPLGKESLQHATSDFIADLLRPLPGIDVFNKFGLKLYSLHQNINFRVRKGDKNARVCCSRKGWITVPREEAYDEILQILVKKTREAVSI-------------------ILAYKDSAFPEQRKLYERRR--ILNNIAVSVTDNMRRMSGWSDK 240
BLAST of mRNA_P-littoralis_Contig126.13.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE) HSP 1 Score: 251 bits (641), Expect = 1.530e-76 Identity = 135/264 (51.14%), Postives = 175/264 (66.29%), Query Frame = 1
Query: 1 MALRHRKLRVEANPSCFDLSTLLEPVLSRFPNLIYVGIWYHDGKVLLYIQNDQNMSALTLGE--QVEKAHVDIVDISSYSTTEGELQEEWRSKLVRAKKSIAVNAGTTAVFVHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTTAPKEEAYDEIL*ILVQKTQEAVNKFTGKIPPCYIDHFEKYAEGILDYKDCPVPEQRKLYERRRNKVLNNIAVSVNERLSRLSSWSGK 786
MA RHRKL V A PSC DL LLEPV++ P L+ + I +HDG+V Y+QN + +S L Q+ + H+D+ IS YS EGELQEEWR K RA S A T + V+PLG+ESLQHIT ++V DLLK + VF+KFGLKLYSL QNVNFR RK R+ +++ W T K+EAYDEIL +LV+KT EAV + + ++HF + +L+ +D VPE++KLYE+RRNK L+ IAVSVN RLS+L W GK
Sbjct: 1 MAPRHRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRAS-STGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVR-TKDKWITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGRWRGK 262
BLAST of mRNA_P-littoralis_Contig126.13.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 243 bits (619), Expect = 1.180e-69 Identity = 130/258 (50.39%), Postives = 170/258 (65.89%), Query Frame = 1
Query: 19 KLRVEANPSCFDLSTLLEPVLSRFPNLIYVGIWYHDGKVLLYIQNDQNMSALTLGE--QVEKAHVDIVDISSYSTTEGELQEEWRSKLVRAKKSIAVNAGTTAVFVHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTTAPKEEAYDEIL*ILVQKTQEAVNKFTGKIPPCYIDHFEKYAEGILDYKDCPVPEQRKLYERRRNKVLNNIAVSVNERLSRLSSWSGK 786
KL V A PSC DL LLEPV++ P L+ + I +HDG+V Y+QN + +S L Q+ + H+D+ IS YS EGELQEEWR K RA S A T + V+PLG+ESLQHIT ++V DLLK + VF+KFGLKLYSL QNVNFR RK R+ +++ W T K+EAYDEIL +LV+KT EAV + + ++HF + +L+ +D PVPE++KLYE+ RNK L+ IAVSVN RLS+L W GK
Sbjct: 2135 KLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRAS-STGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVR-TKDKWITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGRWRGK 2390
BLAST of mRNA_P-littoralis_Contig126.13.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE) HSP 1 Score: 198 bits (503), Expect = 2.760e-60 Identity = 119/258 (46.12%), Postives = 149/258 (57.75%), Query Frame = 1
Query: 1 MALRHRKLRVEANPSCFDLSTLLEPVLSRFPNLIYVGIWYHDGKVLLYIQNDQNMSALTLGEQVEKAHVDIVDISSYSTTEGELQEEWRSKLVRAKKSIAVNAGTTAVFVHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRARKGCKKARLCCSRNGWTTAPKEEAYDEIL*ILVQKTQEAVNKFTGKIPPCYIDHFEKYAEGILDYKDCPVPEQRKLYERRRNKVLNNIAVSVNERLSRLSS 774
+A+ HRKLRV+A+PSCFDLST+LEPV + +PNLIY+GIW+HDG V +Y+Q+ + MS + L + K H+ I +I+ YS L +S G L+ F+ADLL L G+DVFYKFG+KLY LEQNVNFRARKG K+ +G +P C+IDHFEK AE ILD KD VPEQRKLYER RNKVLNNIAV+V + LSRLS+
Sbjct: 6 VAVHHRKLRVQADPSCFDLSTVLEPVRTEYPNLIYLGIWFHDGSVYVYVQSAERMSDIKLTSAL-KDHMVITNIAPYSIP----------LLGSCNRS---------------GDPRLE-----FIADLLNTLHGVDVFYKFGIKLYVLEQNVNFRARKGDKRV------------------------------------SGVLPSCHIDHFEKPAESILDSKDSLVPEQRKLYERMRNKVLNNIAVNVTDNLSRLSN 196
BLAST of mRNA_P-littoralis_Contig126.13.1 vs. uniprot
Match: A0A6H5JWA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA4_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 1.670e-15 Identity = 58/168 (34.52%), Postives = 87/168 (51.79%), Query Frame = 1
Query: 298 AVNAGTTAVFVHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNVNFRA--RKGCKKARLCCSRNGWTTAPKEEAYDEIL*ILVQKTQEAVNKFTGKIPPCYIDHFE---KYAEGILDYKDCPVPEQRKLYERRRNKVLNNIAVSVNERLSRLSSWSGK 786
A T V V+P+GKESL HIT + + +LL G DV ++FG KLY+LE+N+NF+ + G RL + W T K + +L L +EAV + KIP +++FE Y I D ++ +P RK N + +N+A E+L R+ +GK
Sbjct: 122 AEKTAVTLVIVNPIGKESLDHITPELIQELLAGHHGPDVIFRFGAKLYALEENMNFKTDVKSGFISGRLE-EDSAWVTQRKTVGFSMLLENLKDNFEEAVQTYVDKIPYDDVENFELDMSYIRKIFDLQE-DMPVYRKFIRDGFNVLASNMA----EKLRRIERDTGK 283 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig126.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig126.13.1 >prot_P-littoralis_Contig126.13.1 ID=prot_P-littoralis_Contig126.13.1|Name=mRNA_P-littoralis_Contig126.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=187bp MALRHRKLRVEANPSCFDLSTLLEPVLSRFPNLIYVGIWYHDGKVLLYIQback to top mRNA from alignment at P-littoralis_Contig126:29296..30081- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig126.13.1 ID=mRNA_P-littoralis_Contig126.13.1|Name=mRNA_P-littoralis_Contig126.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=786bp|location=Sequence derived from alignment at P-littoralis_Contig126:29296..30081- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig126:29296..30081- >mRNA_P-littoralis_Contig126.13.1 ID=mRNA_P-littoralis_Contig126.13.1|Name=mRNA_P-littoralis_Contig126.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=561bp|location=Sequence derived from alignment at P-littoralis_Contig126:29296..30081- (Pylaiella littoralis U1_48)back to top |