mRNA_P-littoralis_Contig126.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig126.4.1
Unique NamemRNA_P-littoralis_Contig126.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig126.4.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 1.780e-41
Identity = 87/132 (65.91%), Postives = 96/132 (72.73%), Query Frame = 1
Query:   22 MPSTLSKLYHAAARGSVERTVAVLSQGSVDIDGGYGDGGQTPLMVASTMGYLRVVRVLLRLGPRVSVADNDGATALHLSIVNTWHGSVERVTATTDIDRGCGETNQTPLMVASAIGSSRVVRDLLRQGASVS 417
            MPSTLSKLY AAA GSVERTVAVLSQGSV+IDGGYGD G+TPLM ASTMGYLRVVRVLLRLG RVSVADNDGATALHLSIVN  H +V +              + TPL VA+A G  + +  L+  G   S
Sbjct:    1 MPSTLSKLYDAAASGSVERTVAVLSQGSVNIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNK-HLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAGGCSS 131          
BLAST of mRNA_P-littoralis_Contig126.4.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 5.930e-40
Identity = 84/116 (72.41%), Postives = 88/116 (75.86%), Query Frame = 1
Query:   22 MPSTLSKLYHAAARGSVERTVAVLSQGSVDIDGGYGDGGQTPLMVASTMGYLRVVRVLLRLGPRVSVADNDGATALHLSIVNTWHGSVERVTATTDIDRGCGETNQTPLMVASAIG 369
            MPSTLSKLY AAA GSVERTVAVLSQGSVDIDGGYGD G+TPLM ASTMGYLRVVRVLLR G RVSVADNDGATALHLSIV   H +V R              + TPL VA+A G
Sbjct:    1 MPSTLSKLYDAAASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIV-IKHLAVSRALVKAGAGVEARGVDGTPLHVAAAKG 115          
BLAST of mRNA_P-littoralis_Contig126.4.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.020e-39
Identity = 94/160 (58.75%), Postives = 106/160 (66.25%), Query Frame = 1
Query:   22 MPSTLSKLYHAAARGSVERTVAVLSQGSVDIDGGYGDGGQTPLMVASTMGYLRVVRVLLRLGPRVSVADNDGATALHLSIVNTWHGSVERVTATTDIDRGCGETNQTPLMVASAIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHKHLAVSKDLIEA 501
            MPSTLSKLYHA A GSVERTVAVLSQGSVDIDGGYGD G+TPLM A TMGYLRVVRVLLRLG RVSVADNDGATALHLSIVN  H +V +              + TPL VA+A G  + +  L+  GA+V        T L+ S     L   + L+ A
Sbjct:    1 MPSTLSKLYHAPASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNK-HLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAGANVDSEQEGRATPLYISARQGRLEDVRILVGA 159          
BLAST of mRNA_P-littoralis_Contig126.4.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.830e-39
Identity = 73/89 (82.02%), Postives = 78/89 (87.64%), Query Frame = 1
Query:  256 SIVNTWHGSVERVTATTDIDRGCGETNQTPLMVASAIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHKHLAVSKDLIEAGADLEAR 522
            S ++   GS++   ATT IDRGCG+TNQTPLMVAS IGSSRVVRDLLRQGASVSVADSDG TALHHSVYH HLAVSKDLIEAGADLEAR
Sbjct:    3 STLSKASGSIDPTIATTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEAR 91          
BLAST of mRNA_P-littoralis_Contig126.4.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 5.290e-37
Identity = 73/89 (82.02%), Postives = 78/89 (87.64%), Query Frame = 1
Query:  256 SIVNTWHGSVERVTATTDIDRGCGETNQTPLMVASAIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHKHLAVSKDLIEAGADLEAR 522
            S ++   GSVER  ATTDIDR CG+TN TPLMVAS IGSSRVV+DLLRQGASVSVADSDGYTALHHSVYH+HLAVS  LIEAGADLEAR
Sbjct:    3 STLSKASGSVERAVATTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEAR 91          
BLAST of mRNA_P-littoralis_Contig126.4.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 9.370e-37
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 1
Query:  277 GSVERVTATTDIDRGCGETNQTPLMVASAIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHKHLAVSKDLIEAGADLEAR 522
            GSVER  ATTDIDR CG+TNQTPLMVAS IGSSRVVRDLLRQGASVS+ADSDGY ALHH+VYHKHLAVSKDLIEAGADL+AR
Sbjct:  400 GSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDAR 481          
BLAST of mRNA_P-littoralis_Contig126.4.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 5.400e-29
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 1
Query:  256 SIVNTWHGSVERVTATTDIDRGCGETNQTPLMVASAIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHKHLAVSK 486
            S ++   GS +   ATTDIDR CG+TNQTPLMVAS IG SRVVRDLLRQGASVSVADSDGYTALHH+VYHKHLAVSK
Sbjct:    9 STLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSK 85          
BLAST of mRNA_P-littoralis_Contig126.4.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.460e-12
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 1
Query:  352 VASAIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHKHLAVSKDLIEAGADLEAR 522
            VAS +G  RVVR LLR GA VS AD+DG TALH S+ +KHLAVSK L++AGADLEAR
Sbjct:   37 VASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEAR 93          
BLAST of mRNA_P-littoralis_Contig126.4.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.900e-12
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  277 GSVERVT-----ATTDIDRGCGETNQTPLMVASAIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHKHLAVSKDLIEAGADLEAR 522
            GSVER         T+IDR C E   T LM A+  G  R+VR LLR GA VSV+  DG+TALH ++  ++LAV+K LI+AGA++EA+
Sbjct:   28 GSVERTLDLLSGGFTEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAK 114          
BLAST of mRNA_P-littoralis_Contig126.4.1 vs. uniprot
Match: A0A484DQ20_PERFV (Palmitoyltransferase n=11 Tax=Perciformes TaxID=8111 RepID=A0A484DQ20_PERFV)

HSP 1 Score: 64.7 bits (156), Expect = 5.300e-9
Identity = 40/130 (30.77%), Postives = 68/130 (52.31%), Query Frame = 1
Query:  130 DGGQTPLMVASTMGYLRVVRVLLRLGPRVSVADNDGATALHLSIVNTWHGSVER-VTATTDIDRGCGETNQTPLMVASAIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHKHLAVSKDLIEAGADLE 516
            D G   ++ A+  G L   + L+  G  V   D +  T LH + +N+    V+  ++    +D+  G+ N TPL  A   G   +V  L+R GA  S+AD +GY ALH ++  +H+A++  L+  G ++E
Sbjct:   65 DSGSWDIVKATQFGILERCKELVEAGYDVRQPDKENVTLLHWAAINSRSELVKYYISKGAIVDQLGGDLNSTPLHWAIRQGHLPMVIQLMRYGADPSIADGEGYRALHLAILFQHMAIAAYLMAKGQEVE 194          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig126.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G449_ECTSI1.780e-4165.91EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G2C8_ECTSI5.930e-4072.41EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JL58_9PHAE1.020e-3958.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH66_ECTSI1.830e-3982.02EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JHQ8_9PHAE5.290e-3782.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE9.370e-3789.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L0_9PHAE5.400e-2979.22Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNS0_9PHAE1.460e-1270.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSL5_9PHAE3.900e-1250.57Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A484DQ20_PERFV5.300e-930.77Palmitoyltransferase n=11 Tax=Perciformes TaxID=81... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig126contigP-littoralis_Contig126:3432..4675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G449
PFAMsAnk_2,Ank_3,Ank_4,SET
Model size522
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.21e-42
EggNOG OGsCOG2940@1|root,KOG1082@2759|Eukaryota
DescriptionHistone-lysine N-methyltransferase
Cds size501
COG categoryZ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789553.807119-UTR-P-littoralis_Contig126:3431..34521680789553.807119-UTR-P-littoralis_Contig126:3431..3452Pylaiella littoralis U1_48UTRP-littoralis_Contig126 3432..3452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789553.826091-CDS-P-littoralis_Contig126:3452..37061680789553.826091-CDS-P-littoralis_Contig126:3452..3706Pylaiella littoralis U1_48CDSP-littoralis_Contig126 3453..3706 +
1680789553.8431332-CDS-P-littoralis_Contig126:4428..46751680789553.8431332-CDS-P-littoralis_Contig126:4428..4675Pylaiella littoralis U1_48CDSP-littoralis_Contig126 4429..4675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig126.4.1prot_P-littoralis_Contig126.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig126 3453..4675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig126.4.1

>prot_P-littoralis_Contig126.4.1 ID=prot_P-littoralis_Contig126.4.1|Name=mRNA_P-littoralis_Contig126.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=167bp
MPSTLSKLYHAAARGSVERTVAVLSQGSVDIDGGYGDGGQTPLMVASTMG
YLRVVRVLLRLGPRVSVADNDGATALHLSIVNTWHGSVERVTATTDIDRG
CGETNQTPLMVASAIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHKH
LAVSKDLIEAGADLEAR
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mRNA from alignment at P-littoralis_Contig126:3432..4675+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig126.4.1 ID=mRNA_P-littoralis_Contig126.4.1|Name=mRNA_P-littoralis_Contig126.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1244bp|location=Sequence derived from alignment at P-littoralis_Contig126:3432..4675+ (Pylaiella littoralis U1_48)
GTACTTGTTTCAGTTCCCAACATGCCGTCAACTCTGAGCAAACTGTATCA TGCCGCAGCCCGTGGTTCCGTCGAGCGTACGGTTGCTGTGCTTTCTCAAG GGTCGGTCGACATCGACGGAGGCTACGGTGATGGGGGCCAGACCCCTCTT ATGGTGGCCTCCACCATGGGATACTTGCGGGTCGTAAGGGTCCTCTTGAG ACTGGGACCCCGGGTGTCGGTGGCGGACAATGACGGTGCGACTGCTCTAC ACCTGTCGATTGTCAACACCTGGCAGTCAGCAAGGCTCTGGTCAAGGCTG GTGCGGATGTAGGAGCGAGAGCTTGCTTCCTATCGGGGTCAGAGACCATT CGAGGATCCACGCCTCTCCATCTGGCCGCCATTGTTGGCTTCCACGAAGG GATGGTCATGCTGATTAATGCAGGCGCAAACGTGGACAGCCGCTTGCACA CCAACGAGACACTCTAGTACATTTCGGCAAGATACATTACATAAGAAAGT GTTATCTTGGACCGTCAACCCAACATCACAAATTCAGGCTGGGCCCGATT TCTGGTTTCTTATGAGCGGGCCGGTACTGTACACGGGCAAGAAGGCTGAA CAAGGAAGCTGATGCGGCCAAAGCCAAGGCGACGAAAGCCAAGGCCGCCC CGGGCCCAAAGCGCAAGGTATCGTCGTCTTCGAGCGTGGTCACCAAAAAA GCAAAAACAGCTCATTCAGTGGCAGCAAAAAAGTCAACGGCCGCGGTGTC CGCCAAACGCAAGGCGGACGCCCTGAAAACGCAAGAGATAACAGAACAGG CCGTTGTCTCGACCATAAAAACAAAGGCTAAGGTGGCCAAGAAGAAGCTG CCTCGGCCTCTGGCCGGGCTCACCTCCAACCTCAACTGGTAGCGTTGATT TGATTTTCCCATTGTGAGGAGAAAAGTTTAGACGTAGAAACATGTTGACA GCAGATGCAACTGAGCACGACATGCCATCCACTCTGAGCAAAGCCAGCGG TTCCGTCGAGCGTGTGACTGCTACGACCGACATCGACCGAGGCTGTGGTG AAACGAACCAGACACCGCTGATGGTGGCCTCCGCGATCGGTTCTTCGCGC GTTGTCAGAGACCTTCTGCGGCAGGGTGCCAGCGTCTCGGTAGCGGACAG CGACGGTTATACTGCTCTGCACCACTCGGTTTATCACAAGCATCTGGCTG TCAGCAAAGACCTGATCGAGGCGGGAGCGGATCTTGAAGCGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig126:3432..4675+

>mRNA_P-littoralis_Contig126.4.1 ID=mRNA_P-littoralis_Contig126.4.1|Name=mRNA_P-littoralis_Contig126.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=501bp|location=Sequence derived from alignment at P-littoralis_Contig126:3432..4675+ (Pylaiella littoralis U1_48)
ATGCCGTCAACTCTGAGCAAACTGTATCATGCCGCAGCCCGTGGTTCCGT
CGAGCGTACGGTTGCTGTGCTTTCTCAAGGGTCGGTCGACATCGACGGAG
GCTACGGTGATGGGGGCCAGACCCCTCTTATGGTGGCCTCCACCATGGGA
TACTTGCGGGTCGTAAGGGTCCTCTTGAGACTGGGACCCCGGGTGTCGGT
GGCGGACAATGACGGTGCGACTGCTCTACACCTGTCGATTGTCAACACCT
GGCACGGTTCCGTCGAGCGTGTGACTGCTACGACCGACATCGACCGAGGC
TGTGGTGAAACGAACCAGACACCGCTGATGGTGGCCTCCGCGATCGGTTC
TTCGCGCGTTGTCAGAGACCTTCTGCGGCAGGGTGCCAGCGTCTCGGTAG
CGGACAGCGACGGTTATACTGCTCTGCACCACTCGGTTTATCACAAGCAT
CTGGCTGTCAGCAAAGACCTGATCGAGGCGGGAGCGGATCTTGAAGCGAG
G
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