mRNA_P-littoralis_Contig125.139.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig125.139.3 vs. uniprot
Match: D8LFQ9_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ9_ECTSI) HSP 1 Score: 521 bits (1343), Expect = 1.240e-156 Identity = 548/1345 (40.74%), Postives = 662/1345 (49.22%), Query Frame = 2
Query: 203 MEAKNRRTSDVAR---------------GGSGGYLTPPK---EGQRRDLASSGRGVSPEVS-RTARPKQAVGPPVGEGRRGHGAEERDGXXXXXXXTRAGRARGSRSLSFPLEGLQK-SGCFVTPKKISGSGFGGG---------VHRMAVSPSAHEPVRIAPMARRGATTNAFLGANDSNSHQYDRG---SVYDDHGKTAAARGATAASAHDGEGATPRRLIARTHDETRDGSSGATAAADEAC--QSDRSGFGVGRSRDRRSATESM-RGGVAGVEENGRAGGGQSMDALRADSVAAE-RNAVELVAVGYDEWKEACTAQGKIYYYNRRTRVPRWTLPPTATYVPNHGQPAGYRIFALA-TPAVSLNXXXXXXXXXXXGSRRTDECVSDASRGRVDPFV-SLGGAGGGDNAEAFS--QTWGVSDRGGGDGS-----RLPEVAPTTAT---TPAAATXXXXXXX--------ASTAITNATDCCGLGHDDSAATAAKQRFVVHKSGLWASSSTSTAAAPSSARAELPETAPTRAPTTPSSSPSQT-AITGNDNPATFVAE-ATPGGV--NNETPVLTEETRELINLDMSPA-PHTTTTGRANDSADEETAHAASQAAAAGSLGGVAGVRAGVG------RVVSGLTVLKQSEGAVRMHQTPEEDAESLVVLRAGAAVDVQPAPEDTNPAAGAGTASPLTAAVPDEPVPSPITVGGKQWETQEGAVSPAGSAQTAPTTVEGSGSLDTPIPATVTAAVAATSGNQFFEAED--REQPMERCRHTDGAEGPSLSRSFSSASLTDFVHSVRVDSGGRGDASLSSPVYRAS----GAKGLVPSRGGDGTNEDETEMEEEAVFSSGRSQGMLRRRPLGPVRRSEELTCPASSRKSREQDFG-------PYAEATPAATGG-TPTTALAGLSVNQVR-------SRSRSDALAAAREDTVDLARGSGI------------GEMRDNGL-PGSSVLRHRVRRQLFSEKSEARPLVFCPFCGEGNLCAGGLQGHLQVCYVLDRCRGGETHKQVEVAIKAIAVDNQNPAPIGSVSPREDESL-----RTSSTVLQQQAPPAALVSKNVGSGPENLLA--AASEAFELGG----GAGXXGVGAVVSGAGLEISSGGEGG---EVERCEGCGRTFAPGRLQSHAKACRRVFLERRRPYDLKAMRARGTPLEFFQKPIGEACAEGNTSICGKEADGGNSAATRRAGTKAFP--VGGSSMRQNRALRGGHGDHVSP-----NVGGPMGTARPTRGGGGGPDPVRGRYDIF--LPH---SAHCPFCSGSIPRAKFSAHLLRCKKPRKTHSVRRAEFGSS 3856
MEA++RR SD G + LTPPK +G RDLA + PE + RTA P +A G G G+ E D XXXXX R + S + PLEGL K GCFVTPKKISG G RM VSPS HEPVRIAPM R + + H +TAA + + G T R + R +T GS+GATA D+ Q++ S F VGRS +R SA ESM RG VAA +A EL+ V +DEWKEA TA+GKIYYYNRRTRVPRWTLPPTAT+VP+ +PAGYRIFALA T +++ GS RT S G +DP + GGAG G EA S + +G + GGG L EV P T + +PAA++ XXXX AS + N G G D A T K+R E+AP A +P + +T +N T A A P G +ET L E+TR+ D P P + T R + S H+ S +A GG AG+ G AV +TP E V + + +V P PAA A+ E G+++ET+ A APTT G+G + T + AA A +G Q ++ Q SSASL DFVH VRV SGGRGDASLSSP R++ G +G R GD + E FSS R G RRPLGPVRRSEE+ P SSR S+ Q+ P A+ AT TPTTALAG+ V Q SRSR A A DTV + GSG+ G GL PGSSVLRHRVRRQLFSE SEARPLVFCPFCGEG + AGGL+ HLQ CYVLDRCRG ETHKQVEVAI+A++V++Q + + SL + SST+LQ PP VSK G+GPEN+LA ASE ELGG G G VSG GLE+S GG G E ERC CGRTFAPGRL+SHAKACR VFLERRRPYD KAMRARGTPLEFFQ+PIG A ++GN S G DGG +AA+RR + P VGGSS+R+ + + G D VSP +VG G++R G GG R + LP SAHCPFCS SIPRAK SAHLLRCKK R++ + R E G S
Sbjct: 1 MEAEHRRRSDERERAAYDGSSPASAALLGSTTDCLTPPKLDGQGGDRDLALV---MKPERAVRTAWPDRAAGRATG----GY-CERSDRGGXXXXXXXXXRNARAVSPTLPLEGLHKMEGCFVTPKKISGHVLLGNRGXXXXXXXXRRMGVSPSDHEPVRIAPMVRHDRSDXXXXXXXXXXXXXXXXXXXXAATSMHTRTAAKQHENDRAYTLGFSTTETRPVDRGDRKT--GSTGATAVVDDFPWKQTESSRFVVGRSSERMSAAESMGRGXXXXXXXXXXXXXXXXXXXXCLGGVAAAGHDAAELLTVEHDEWKEARTAEGKIYYYNRRTRVPRWTLPPTATFVPDPNRPAGYRIFALAATVNINIGDKSTAPASATSGSERT-------SGGVIDPLLRGPGGAGAGGAREADSSRERFGRDNSGGGGAPLLIAPTLSEVTPMTTSDLESPAASSPTTXXXXXXXXXXXXASARVKNGVGTTGCG-DGGAVTTPKRR----------------------------ESAPPAAARSPRDNGGTVETLTSTENAHTVSASPAPPTGYFSADETASLVEKTRDD---DKHPERPVSPTAPRLSCSVG----HSMSVPSA----GGGAGIEGGAAPPXXXXXXXXXXXXXXXXGSAVGEGKTPRRQVEHGVEVGSACLTEVLP----DEPAAVTTRAAXXXXXXVRE---------GEEFETE------AQLTVDAPTT-GGAGPVKTDRELEMEAAAAMATGQQGLSSQSGGAGQRXXXXXXXXXXXXXXXXXXXSSASLQDFVHYVRVQSGGRGDASLSSPASRSNRRRGGGQGAGAMRSGDAHMSKDKE-----AFSSERIPGTFHRRPLGPVRRSEEMEHPLSSRSSKPQEHHSHQGLEEPAADTALWATAAETPTTALAGVPVYQTHXXXXXXSSRSRRSAQA----DTVRYS-GSGVSGGKTGVCDAKGGSSGGRGLLPGSSVLRHRVRRQLFSEDSEARPLVFCPFCGEGVVRAGGLRDHLQECYVLDRCRGSETHKQVEVAIRAVSVEHQMHTSATNTHGKGASSLNGGSFQDSSTLLQHALPP--FVSK--GNGPENVLAPAVASENSELGGVVATGGGRGAAAGEVSGVGLEVSLGGGGAGGAEEERCGDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSDGNPSTSGTGGDGGGTAASRRGVGRNNPSSVGGSSVRREGSSQSGGADCVSPGELDVSVGTGGGSSRGAGGEVGGSFLRRSKKVALKTLPAVEGSAHCPFCSTSIPRAKLSAHLLRCKKLRRSQTCPRPEAGPS 1254
BLAST of mRNA_P-littoralis_Contig125.139.3 vs. uniprot
Match: A0A6H5KQR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR3_9PHAE) HSP 1 Score: 378 bits (970), Expect = 4.620e-112 Identity = 285/567 (50.26%), Postives = 328/567 (57.85%), Query Frame = 2
Query: 2708 TPTTALAGLSVNQVR-----SRSRSDALAAAREDTVDLARGSGIG------------EMRDNGL-PGSSVLRHRVRRQLFSEKSEARPLVFCPFCGEGNLCAGGLQGHLQVCYVLDRCRGGETHKQVEVAIKAIAVDNQNPAPIGSVSPRE-----DESLRTSSTVLQQQAPPAALVSKNVGSGPENLLA--AASEAFELGGGAGXXGV----GAVVSGAGLEISSGGEGG---EVERCEGCGRTFAPGRLQSHAKACRRVFLERRRPYDLKAMRARGTPLEFFQKPIGEACAEGNTSICGKEADGGNSAATRRAGTKAFP--VGGSSMRQNRALRGGHGDHVSP-----NVGGPMGTARPTRGGGGGPDPVRGRYDIF--LPH---SAHCPFCSGSIPRAKFSAHLLRCKKPRKTHSVRRAEFGSS-RTSGTSTDTT---HNND-------NGDDIIGMSK----STARKVRCPHCSRGFSPSVAPTHISICARVENRPKSAATR----ATHKDADTGV-LDVYHAPAFLVSGPGRIQS-----------------EKARVMPPFY 4165
TPTTALAG+ Q SRSR A A DTV + GSG+G GL PGSSVLRHRVRRQLFSE SEARPLVFCPFCGEG + A GL+ HLQ CYVLDRCRG ETHKQVEVAIKA++V+NQ + R D S + SST+LQ P VSK G+ PEN+LA ASE ELG G+ G VSG E+SSGG G + ERCE CGRTFAPGRL+SHAKACR VFLERRRPYD KAMRARGTPLEFFQ+PIG A ++ N + GK DGG +AA+RR + P VGGSS+R+ + G D VSP +VG G++R G GG R + LP AHCPFCS SIPRAK SAHLLRCKK R++ + R + G S R SGT H +D NG + +RKVRCPHC RGFSP+VAPTHISICARVENRPK + T A DA V L V + A G + + EKARVMPPFY
Sbjct: 39 TPTTALAGVPGYQTHHHHPSSRSRRSAQA----DTVRYS-GSGVGGGNXXXXXXXXXXSEGRGLLPGSSVLRHRVRRQLFSEDSEARPLVFCPFCGEGVVRARGLRDHLQECYVLDRCRGSETHKQVEVAIKAVSVENQMHTSATNTHGRRASSLNDGSFQDSSTLLQHALSP--FVSK--GNDPENVLAPAVASENSELGRVVATGGLRGTAGGEVSGVSSEVSSGGGGAGGAKFERCEDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSD-NPTTSGKGGDGGGNAASRRGVGRNKPSSVGGSSVRREGSSESGDADRVSPGGLDVSVGTGGGSSRGVGGEVGGSFLRRSKKVALKTLPAVEGRAHCPFCSSSIPRAKLSAHLLRCKKLRRSQTCPRPKTGPSPRISGTDASNATVIHEDDKARTATYNGGXXXXXXXXXXXNASRKVRCPHCLRGFSPAVAPTHISICARVENRPKGSGTAKAAAARKDDAQKKVALGVGYTDASPPGGRKGLAASHGSSGAXXXXXXXXXPEKARVMPPFY 595
BLAST of mRNA_P-littoralis_Contig125.139.3 vs. uniprot
Match: A0A835Z7V0_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7V0_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 5.190e-16 Identity = 83/241 (34.44%), Postives = 100/241 (41.49%), Query Frame = 2
Query: 2858 SVLRHRVRRQLFSEKSEARPLVFCPFCGEGNLCAGGLQGHLQVCYVLDRCRGGETHKQVEVAIKAIAVDNQNPAPIGSVSPREDESLRTSSTVLQQQAPPAALVSKNVGSGPENLLAAASEAFELGGGAGXXGVGAVVSGAGLEISSGGEGGEVERCEGCGRTFAPGRLQSHAKACRRVFLERRRPYDLKAMRARGTPLEFFQKPIGEACAEGNTSICGKEADGGNSAATR--RAGTKAFP 3574
S +RH RRQLFSE + A+P V+CP+CGE A L HL C VL+R RGG + VE A+ A + A AA A GGGA GE E+C CGRTFA GR+ +HA+ CRRVF RR +D + R RGTPL F Q+ AE + G GG AAT R T A P
Sbjct: 683 SAVRHGPRRQLFSEGAPAQPSVYCPYCGERED-AAALAAHLAACVVLERARGGPAQRSVEAALLAA-----------------------------RDAADAAXXXXXXXXXXXXXXAPRERFVRSGGGA--------------------RSGE-EQCADCGRTFAEGRIDAHARVCRRVFGARRPVFDGRERRLRGTPLAFMQR------AEATGGVGGS---GGKRAATAPLRLATPALP 863 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig125.139.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig125.139.3 >prot_P-littoralis_Contig125.139.3 ID=prot_P-littoralis_Contig125.139.3|Name=mRNA_P-littoralis_Contig125.139.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1322bp MEAKNRRTSDVARGGSGGYLTPPKEGQRRDLASSGRGVSPEVSRTARPKQback to top mRNA from alignment at P-littoralis_Contig125:494505..510532+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig125.139.3 ID=mRNA_P-littoralis_Contig125.139.3|Name=mRNA_P-littoralis_Contig125.139.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=16028bp|location=Sequence derived from alignment at P-littoralis_Contig125:494505..510532+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig125:494505..510532+ >mRNA_P-littoralis_Contig125.139.3 ID=mRNA_P-littoralis_Contig125.139.3|Name=mRNA_P-littoralis_Contig125.139.3|organism=Pylaiella littoralis U1_48|type=CDS|length=3966bp|location=Sequence derived from alignment at P-littoralis_Contig125:494505..510532+ (Pylaiella littoralis U1_48)back to top |