prot_P-littoralis_Contig125.74.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig125.74.2
Unique Nameprot_P-littoralis_Contig125.74.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length329
Homology
BLAST of mRNA_P-littoralis_Contig125.74.2 vs. uniprot
Match: D8LFT3_ECTSI (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT3_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 8.240e-89
Identity = 159/211 (75.36%), Postives = 175/211 (82.94%), Query Frame = 0
Query:    1 MAEALRVLSLLQQETAIVDEVLGALTRCQRQDRRCPEIGTKLDAHARAAIRKALELLRGKEAKLVKAGEALSAHQQLHAEVESLRQEVAAGEQRVQDCARRLTEANVVLKGPLEDARRLLEAGRNAEAAEIGVSDIVDYAQRISGITSAPSYWKPGMSMVGFAPPAPRPEMMRAGALSAFAVTTGTT-LSASELLRIANVLDKPPDQKNAS 210
            MAE  RVLSLL++ET+I DEVLGAL RCQ         GTKLDA+ARAAIRKAL LL GKEAKL KA EAL  HQQLHAEVESLRQEV  GEQ+VQDCAR+LTEA+  L+GPL DA+RLLEAGR AEAAEI V DIVDYAQRISGITSAP+YWKPGM+MVGFAPPAPRPEMMRAGALSAFAV+ GT+ LS  ELL +A  LD+PPDQ  A+
Sbjct:    1 MAEVSRVLSLLREETSIADEVLGALARCQS--------GTKLDANARAAIRKALVLLNGKEAKLTKASEALREHQQLHAEVESLRQEVRYGEQQVQDCARKLTEADAALRGPLRDAKRLLEAGRKAEAAEIDVRDIVDYAQRISGITSAPAYWKPGMAMVGFAPPAPRPEMMRAGALSAFAVSPGTSSLSLPELLTLARDLDRPPDQTGAA 203          
BLAST of mRNA_P-littoralis_Contig125.74.2 vs. uniprot
Match: A0A835YUZ4_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ4_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.160e-17
Identity = 51/90 (56.67%), Postives = 58/90 (64.44%), Query Frame = 0
Query:   98 CARRLTEANVVLKGPLEDARRLLEAGRNAEAAEIGVSDIVDYAQRISGITSAPSYWKPGMSMVGFAPPAPRPEMMRAGALSAFAVTTGTT 187
            C   +  A+  L+  LE AR+ L     A AA + VSDIV YAQRISG TSAP+YWKPGM MVGF PPAP PEMMR GAL+     T  T
Sbjct:   59 CVAAIAGASADLRHALESARKSLGEFDKACAAGVAVSDIVAYAQRISGTTSAPAYWKPGMPMVGFLPPAPLPEMMRMGALTRLNAGTAAT 148          
BLAST of mRNA_P-littoralis_Contig125.74.2 vs. uniprot
Match: A0A7S3UVI8_HETAK (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVI8_HETAK)

HSP 1 Score: 77.4 bits (189), Expect = 9.010e-13
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 0
Query:   94 RVQDCARRLTEANVVLKGPLEDARRLLEAGRNAEAAEIGVSDIVDYAQRISGITSAPSYWKPGMSMVGFAPPAPRPEMMRAGALSAFA 181
            R +D A  L+     L+  L   + +++A R A A  + +  +V YAQRI G T+AP YWKPGM MVGF PPAP PE +RAG+  A+A
Sbjct:   76 RARDLASALSSKEKDLRIALRKVKPVVDAARLANANPVSLKGLVAYAQRIGGTTAAPPYWKPGMPMVGFIPPAPLPEQIRAGSFHAYA 163          
BLAST of mRNA_P-littoralis_Contig125.74.2 vs. uniprot
Match: A0A024TZF4_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZF4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.630e-11
Identity = 46/126 (36.51%), Postives = 72/126 (57.14%), Query Frame = 0
Query:   55 ELLRGKEAKLVKAGEALSAHQQLHAEVESLRQEVAAGEQRVQDCARRLTEANVVLKGPLEDARRLLEAGRNAEAAEIGVS--DIVDYAQRISGITSAPSYWKPGMSMVGFAPPAPRPEMMRAGALS 178
            +L+  K+ +L+   + L+ HQ    E+++L+ ++A  EQ++   A+ L      +   L   RR LE      ++++ +   ++V YA +I+G TSAP  WKP   M GF PPAP PEMMRAG LS
Sbjct:   48 DLVVAKDKQLLNTVKQLNQHQSAQKELDALKAQIADKEQKIVRYAKELRSGQQSIASALAKHRRTLEQCHQDSSSKVVLDPLEVVAYAHKIAGSTSAPPNWKPEYPMFGFVPPAPTPEMMRAGVLS 173          
BLAST of mRNA_P-littoralis_Contig125.74.2 vs. uniprot
Match: A0A1V9Y9L5_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y9L5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.500e-11
Identity = 45/125 (36.00%), Postives = 71/125 (56.80%), Query Frame = 0
Query:   55 ELLRGKEAKLVKAGEALSAHQQLHAEVESLRQEVAAGEQRVQDCARRLTEANVVLKGPLEDARRLL-EAGRNAEAAEIGVSDIVDYAQRISGITSAPSYWKPGMSMVGFAPPAPRPEMMRAGALS 178
            E +  K+  L++  + L+AHQ    E++ L+ ++A  E ++ + AR L      +   L   +R+L  A  +  A  +   DI+ YA +++  +SAP+ W+PG  M GF PPAP PEMMRAG LS
Sbjct:   50 EAILKKDRLLLQTVKQLNAHQVAQKELDRLKAQIAEKEAKIVNYARALRSGQKAISNVLLKHKRVLTNAKASPSATHLAPQDIIAYAHKVASTSSAPAGWQPGFPMFGFMPPAPTPEMMRAGVLS 174          
BLAST of mRNA_P-littoralis_Contig125.74.2 vs. uniprot
Match: A0A8K1CAS9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CAS9_PYTOL)

HSP 1 Score: 73.2 bits (178), Expect = 7.250e-11
Identity = 48/129 (37.21%), Postives = 72/129 (55.81%), Query Frame = 0
Query:   60 KEAKLVKAGEALSAHQQLHAEVESLRQEVAAGEQRVQDCARRLTEANVVLKGPLEDARRLLEAGRNAEAAEIGVSDIVDYAQRISGITSAPSYWKPGMSMVGFAPPAPRPEMMRAGALSAFAVTTGTTL 188
            K+  L+ A + L  HQ    E+ +++ E+   +Q+V   A +L ++   +   L+  RR+L+  R  +   +   D+V YA RI+G TSAP  W+PG  M GF PPAP+ +MMRAG LS   V    TL
Sbjct:   54 KDRDLLSAVKTLVQHQVAQKELLAVQDEIHEKKQKVVRYAAQLRQSQEDIALVLKKHRRVLDHARQKQKVLLDPRDVVAYAHRIAGTTSAPKEWRPGFPMFGFMPPAPQEQMMRAGVLSRGVVDEVVTL 182          
BLAST of mRNA_P-littoralis_Contig125.74.2 vs. uniprot
Match: A0A067BXL3_SAPPC (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BXL3_SAPPC)

HSP 1 Score: 72.0 bits (175), Expect = 1.610e-10
Identity = 48/148 (32.43%), Postives = 78/148 (52.70%), Query Frame = 0
Query:   55 ELLRGKEAKLVKAGEALSAHQQLHAEVESLRQEVAAGEQRVQDCARRLTEANVVLKGPLEDARRLLE-AGRNAEAAEIGVSDIVDYAQRISGITSAPSYWKPGMSMVGFAPPAPRPEMMRAGALSAFAVTTGTTLSASELLRIANVLD 201
            E +  K+  L++  + L+AHQ    E+++++ ++A  E ++   AR L      +   L   RR+L  A  ++  + +   DI+ YA +++  +SAP+ W+PG  M GF PPAP PEMMRAG LS   + +  T   S        LD
Sbjct:   51 EAILKKDRVLLQTVKQLNAHQAAQKELDNIKAQIAEKEAKIVQYARELRGGQKAISNVLLKHRRVLSNAKASSTTSHMKPQDIIAYAHKVASTSSAPAGWQPGYPMFGFMPPAPTPEMMRAGVLSRGIIDSIVTKETSSYTSTKRSLD 198          
BLAST of mRNA_P-littoralis_Contig125.74.2 vs. uniprot
Match: W4FJC9_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FJC9_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.640e-10
Identity = 46/126 (36.51%), Postives = 72/126 (57.14%), Query Frame = 0
Query:   55 ELLRGKEAKLVKAGEALSAHQQLHAEVESLRQEVAAGEQRVQDCARRLTEANVVLKGPLEDARRLLEAGRNAEAAEIGVS--DIVDYAQRISGITSAPSYWKPGMSMVGFAPPAPRPEMMRAGALS 178
            +++  K+ +L++  + L+ HQ    E+++L+ ++A  EQ++   A+ L      +   L   RR L       A+++ +   DIV YA +I+G TSAP  W+P   M GF PPAP PEMMRAG LS
Sbjct:   47 DMVVAKDKQLLRTVKQLNQHQTAQKELDALKAQIADKEQKIVRYAKELRSGQQSIASVLAKHRRTLTQCAQDAASKVVLDPLDIVAYAHKIAGSTSAPPNWQPEYPMFGFVPPAPTPEMMRAGVLS 172          
BLAST of mRNA_P-littoralis_Contig125.74.2 vs. uniprot
Match: A0A6G0X371_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X371_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 7.300e-10
Identity = 44/126 (34.92%), Postives = 72/126 (57.14%), Query Frame = 0
Query:   55 ELLRGKEAKLVKAGEALSAHQQLHAEVESLRQEVAAGEQRVQDCARRLTEANVVLKGPLEDARRLLE--AGRNAEAAEIGVSDIVDYAQRISGITSAPSYWKPGMSMVGFAPPAPRPEMMRAGALS 178
            +L+  K+ +L+ + + L+ HQ    E+++++ ++A  EQ++   A+ L      +   L   RR L+  A       ++   D++ YA +I+  TSAP+ W+PG  M GF PPAP PEMMRAG LS
Sbjct:   49 DLVVEKDKQLLHSIKQLNKHQAAQKELDAIKAQIADKEQKIIRYAKELRSGQQAISSVLAKHRRTLDQCAQDAPNKVKLAPRDVIAYAHKIACTTSAPANWQPGYPMFGFMPPAPTPEMMRAGVLS 174          
BLAST of mRNA_P-littoralis_Contig125.74.2 vs. uniprot
Match: A0A1V9Y7Z7_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7Z7_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 9.500e-10
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 0
Query:   71 LSAHQQLHAEVESLRQEVAAGEQRVQDCARRLTEANVVLKGPLEDARRLLEAGRNAEAA----EIGVSDIVDYAQRISGITSAPSYWKPGMSMVGFAPPAPRPEMMRAGALS 178
            L+ HQ+   E++ ++Q++A  E ++   A+ L      +   L   +R+LE   NA+AA         DI+ YA +++  TSA   W+PG +MVGF PPAP PEMMRAG LS
Sbjct:   69 LNQHQRAQKELDRIKQQIAEKEAKIVAYAKELRTGQQAINSVLLKHKRVLE---NAKAAPNTPRFPPQDIIAYAHKVASTTSAALNWQPGFAMVGFLPPAPTPEMMRAGVLS 177          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig125.74.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LFT3_ECTSI8.240e-8975.36Mediator of RNA polymerase II transcription subuni... [more]
A0A835YUZ4_9STRA1.160e-1756.67Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3UVI8_HETAK9.010e-1346.59Mediator of RNA polymerase II transcription subuni... [more]
A0A024TZF4_9STRA3.630e-1136.51Mediator of RNA polymerase II transcription subuni... [more]
A0A1V9Y9L5_9STRA6.500e-1136.00Mediator of RNA polymerase II transcription subuni... [more]
A0A8K1CAS9_PYTOL7.250e-1137.21Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067BXL3_SAPPC1.610e-1032.43Mediator of RNA polymerase II transcription subuni... [more]
W4FJC9_9STRA2.640e-1036.51Mediator of RNA polymerase II transcription subuni... [more]
A0A6G0X371_9STRA7.300e-1034.92Mediator of RNA polymerase II transcription subuni... [more]
A0A1V9Y7Z7_9STRA9.500e-1039.29Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 67..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 239..253
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..238
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..328
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 309..328
IPR019258Mediator complex, subunit Med4PFAMPF10018Med4coord: 52..185
e-value: 4.2E-16
score: 59.2
IPR019258Mediator complex, subunit Med4PANTHERPTHR13208MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4coord: 50..323

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig125contigP-littoralis_Contig125:291080..294932 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig125.74.2mRNA_P-littoralis_Contig125.74.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig125 291080..295289 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig125.74.2 ID=prot_P-littoralis_Contig125.74.2|Name=mRNA_P-littoralis_Contig125.74.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=329bp
MAEALRVLSLLQQETAIVDEVLGALTRCQRQDRRCPEIGTKLDAHARAAI
RKALELLRGKEAKLVKAGEALSAHQQLHAEVESLRQEVAAGEQRVQDCAR
RLTEANVVLKGPLEDARRLLEAGRNAEAAEIGVSDIVDYAQRISGITSAP
SYWKPGMSMVGFAPPAPRPEMMRAGALSAFAVTTGTTLSASELLRIANVL
DKPPDQKNASNGTKGAGVAGSDDNSNSSSSNSSSPSGEARQRREQKDRLG
GEGESAKATGVRRAGGGGEDGGGGGSPGGGKGKSRAAPGASFAKPSPPKR
PKISLDLDDLDSDIDDEDDDDGSSSGGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019258Mediator_Med4