mRNA_P-littoralis_Contig125.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig125.27.1
Unique NamemRNA_P-littoralis_Contig125.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig125.27.1 vs. uniprot
Match: D8LCZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ4_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 1.370e-64
Identity = 189/472 (40.04%), Postives = 223/472 (47.25%), Query Frame = 1 
Query:  289 MEASLSNFLGKGPSNGTPTKRPAAAINFADKYRPDVQHLQSLGLTRAMRALDSLRKHNATAEEGDELGASGRLDVNDRAGLFTLCGCQRGCRLTSDEMKTIQRVTHGMAEVFTSLELQFKALAPRMRG--SDGEQADYQDQLEAFFEAAGTWLEFYGEARALASRKQSVLRLELTLSERRARGGAVGSPGR-MERVPRFP-AWLTTLIERYQTEHRRLLLGSADTGARGHRSVPESHAPPDSKMVVEDIAKGPTEAGAGXXXXXXEETSGETAATAGGEAAAMVSDEANVAADSSAENVTADSSDGKPSLDSLVEFSRFLSLLVESAKQEEQMPLSPATEKERAALDELLRARQVGGEKTWGDKSNSNSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRLKSPRPVGSPGSPRPLRYWARRIHQFLLSVRELRAVPERDPNRLEELMSEIRRGRGGRGKRSSLSPPLGFV 1692
            M+ SL NFLG         + P  A+NF D+  P ++ L+ LGLT+AMRALD LRKHNAT  E   LGASGRLD  DRAGL TLCGCQRGCRLTSDEMKT+QR+T GM  +F SLELQF+ LAP++R   S GE +   +   AFF AA     F+         K S    +    +    GG    P R +++   F  A  +T    Y T             + G RS  ES   P S       A+G             E  S E   T GG A                           P + SLV FSR+L+LLV SA QEE  P   A E ER+AL ELLRA   G +       N+                                       PVGSPGSPRPLRYWARRIH+FLLSVRELR VP+RD   LEE+M E RRG          SPP   V
Sbjct:    1 MQVSLCNFLG------VVGRSPKTAVNFVDEDLPVLEDLRRLGLTKAMRALDGLRKHNATKAEESMLGASGRLDTQDRAGLLTLCGCQRGCRLTSDEMKTVQRLTRGMDGLFASLELQFETLAPKLRKRVSAGEGSARSEAFGAFFPAA-----FHHP-------KDSCQGCDSNGDD----GGGSAKPERGLQQASSFDNATSSTKAVGYTTT------------SMGPRSTEESKITPISTTTT--AAEG-----------LVERNSDEKGGT-GGRAPECAG----------------------PPMGSLVRFSRYLALLVASA-QEEHTP--SANECERSALAELLRASDDGSDSGSSGVVNTRHPGTSNIVHQNQSPAAPAPGPST---------------PVGSPGSPRPLRYWARRIHRFLLSVRELRTVPDRDLASLEEIMLEARRGXXXXXXXRRASPPRALV 384
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig125.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCZ4_ECTSI1.370e-6440.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig125contigP-littoralis_Contig125:124479..128880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1836
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_001650.1
Cds size1551
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig125.27.1prot_P-littoralis_Contig125.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig125 124659..128775 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789546.7169695-UTR-P-littoralis_Contig125:124478..1246581680789546.7169695-UTR-P-littoralis_Contig125:124478..124658Pylaiella littoralis U1_48UTRP-littoralis_Contig125 124479..124658 +
1680789546.8010361-UTR-P-littoralis_Contig125:128775..1288801680789546.8010361-UTR-P-littoralis_Contig125:128775..128880Pylaiella littoralis U1_48UTRP-littoralis_Contig125 128776..128880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789546.7278204-CDS-P-littoralis_Contig125:124658..1249941680789546.7278204-CDS-P-littoralis_Contig125:124658..124994Pylaiella littoralis U1_48CDSP-littoralis_Contig125 124659..124994 +
1680789546.7372625-CDS-P-littoralis_Contig125:125804..1259571680789546.7372625-CDS-P-littoralis_Contig125:125804..125957Pylaiella littoralis U1_48CDSP-littoralis_Contig125 125805..125957 +
1680789546.7556212-CDS-P-littoralis_Contig125:126493..1266531680789546.7556212-CDS-P-littoralis_Contig125:126493..126653Pylaiella littoralis U1_48CDSP-littoralis_Contig125 126494..126653 +
1680789546.7665224-CDS-P-littoralis_Contig125:127072..1271571680789546.7665224-CDS-P-littoralis_Contig125:127072..127157Pylaiella littoralis U1_48CDSP-littoralis_Contig125 127073..127157 +
1680789546.7772405-CDS-P-littoralis_Contig125:127460..1278961680789546.7772405-CDS-P-littoralis_Contig125:127460..127896Pylaiella littoralis U1_48CDSP-littoralis_Contig125 127461..127896 +
1680789546.7889605-CDS-P-littoralis_Contig125:128394..1287751680789546.7889605-CDS-P-littoralis_Contig125:128394..128775Pylaiella littoralis U1_48CDSP-littoralis_Contig125 128395..128775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig125.27.1

>prot_P-littoralis_Contig125.27.1 ID=prot_P-littoralis_Contig125.27.1|Name=mRNA_P-littoralis_Contig125.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=517bp
MEPFGSPSQPSSPPSIPKPPPTLPPLALPPPASLSIMEASLSNFLGKGPS
NGTPTKRPAAAINFADKYRPDVQHLQSLGLTRAMRALDSLRKHNATAEEG
DELGASGRLDVNDRAGLFTLCGCQRGCRLTSDEMKTIQRVTHGMAEVFTS
LELQFKALAPRMRGSDGEQADYQDQLEAFFEAAGTWLEFYGEARALASRK
QSVLRLELTLSERRARGGAVGSPGRMERVPRFPAWLTTLIERYQTEHRRL
LLGSADTGARGHRSVPESHAPPDSKMVVEDIAKGPTEAGAGAGAGAGEET
SGETAATAGGEAAAMVSDEANVAADSSAENVTADSSDGKPSLDSLVEFSR
FLSLLVESAKQEEQMPLSPATEKERAALDELLRARQVGGEKTWGDKSNSN
SDDGGEGNKEEDSKILQPPPPPPPATTTTTTRRLKSPRPVGSPGSPRPLR
YWARRIHQFLLSVRELRAVPERDPNRLEELMSEIRRGRGGRGKRSSLSPP
LGFVPSPGIVGDGGCS*
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mRNA from alignment at P-littoralis_Contig125:124479..128880+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig125.27.1 ID=mRNA_P-littoralis_Contig125.27.1|Name=mRNA_P-littoralis_Contig125.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4402bp|location=Sequence derived from alignment at P-littoralis_Contig125:124479..128880+ (Pylaiella littoralis U1_48)
GTCCGAGTCTTCCTCTCCGGGTTTACACGCTTGTCGTTTGCCTCGTCGCC
CTGACGTCATCTCCTTCCTGCTCGGAAGACCACACAGACACCTCGCCCCA
GAAGTCGGCACTTTTGTGCCTGCCCGGAACGCGGCAAGGGCGGTGCGCCG
TGCGCCGTTGGTTTGTTGCAGTAAATAAACATGGAACCTTTCGGTTCGCC
GTCGCAGCCGTCATCGCCACCATCAATACCAAAACCACCACCAACACTTC
CGCCGCTAGCGCTACCGCCACCGGCAAGTCTGTCTATCATGGAGGCTTCG
CTTTCCAACTTTCTGGGCAAAGGCCCATCAAATGGGACGCCGACGAAGCG
CCCTGCTGCCGCGATCAACTTCGCGGACAAATATCGGCCGGACGTGCAGC
ACCTACAAAGCTTGGGACTGACGAGAGCAATGCGAGCGTTGGATAGCCTG
AGGAAACACAACGCAACAGCGGAGGAGGGAGATGAGTTAGGAGCCAGCGG
GAGGCTTGATGTGAATGTATGTACCACAGAGTACAGTAACACGGTTTTGT
TTGCGAGTTTTTCGGCCAGTTTTTCCGCCGCAACATGTACGAGCATTCCG
CTGGTGTTGCGTGTTGGTACTCAATGCGTTACAGAGGCTTCGCATGTGTG
ATCGATTTTGGCTTTACATGCACACGCTACGATGCCAGGTACCGGTATAC
ACTGGTGTCGGGTATGTACGGTCTGCTTACTTTTCACCATCAAGACCCAA
ATGGGACCGCCTTCGCAGGAAAATTAAGTTAAGTAGGAATTAGAGAAGGG
GGGTTACGCAACCCTAACCCTAACCCTAACCCCGAACCCCCCACTAATTT
CAACTGAACTTAATTTTTTTCGAACCCTGCGAAGGCTACTGCCCAAATGG
TACACCCTCGAAACCTTGAACCTTACACTTCTCTCTTGATAATGTGAGTA
CACGGCAAAACGGGAGTGCTGTCTGTTGCACATGTTGTGTCTGCCGTCTT
TCGTGAATATGAAAATTCGACTCAAGGGCTGACGATGGAGAAGTGTTGAG
ATAGACTCTTCTGATGACAAAACCGAAGACGCAGTGTAGTAAGCCCAGCA
CTTTCTCACGTACCAGTATATGTACTCTCCTGAGTGTTTCCCCTCAGGTT
ATCAGGCTCAGCAAGACAATCGCGTGTCGATCGGTTGTATTTATGAGGCC
CGGTTATCTGCGCAAGCCTTACAAACTCCGCGTACTACTGTAGGTACATG
CCTGCTTGGAGCCTCCACTATCCGTGGTTCCTATCTCAATCCACACCGCC
TACGGCTGTTAATTATTCGCTCCAAGGATCGAGCGGGGCTTTTCACCCTC
TGCGGGTGCCAACGCGGTTGTCGACTAACCTCCGACGAAATGAAGACCAT
TCAACGCGTGACTCACGGCATGGCCGAAGTCTTTACCAGCTTGGAGCTTC
AATTCAAAGCCCTCGCTCCTCGGATGCGGGTGAGCTAAGCACAACTGTTA
AAGTATAAACAGAACTTGTTGTTGAATGTATGGAAGGCTGCGCATCTTTG
CGACTTTTCGTTTTCTTCTGGAAATGTTGTAGCAACGCCGTTTGAAAACT
TGTTGTCCTAGGTCAAGGTACGTTTTTACCAAGGTTTCGCTGGCCCTGCT
CAGGTCGAAACACGTTGGAGGGGGACGGAAAATTGGAGTCCCCCACTTTT
GCGACTACTCTCCATTCGAATCCCTTCGAACCGATTGATTGCACCATCGG
TCGTATCCCCGCTTTCAGTACCAGCGATGTCGTCCATTCGCGACAAAATT
TCCTAACATGGCGAGACCCTTTGTTTTATAGCCTGCACGGATGCTATCGA
CGGAACTTTCGTGACTTGTGAAGAATGTAAAAACAAAGCAAAGATAACAT
TTCACACACGCTTTGTGCGCTTAGCTACCCCCCTCCCTCTCGACCGGCTG
TGTCGATGGATGTACGACGGCCGCCCGTGCTCGTCATCTCGGTTGCTTCC
GCGCGTTGGAACCAGGGCAGCGATGGTGAGCAAGCCGACTATCAGGATCA
ACTGGAGGCGTTTTTTGAAGCGGCAGGGACGTGGCTGGAGTTTTACGGCG
AAGCACGGGCGCTGGCGTCCAGGAAACAGTCGGTACTGCGGCTGGAGCTT
ACTCTCTCTGAACGACGTGCTCGAGGTAGAATGGGTCGGTTGGGCCTGTG
CTGCTGCGTTTCGCCTCAGCAATCGGCCGTAAGCCCCCCCCCTACCCCCC
CCCCCTACCAACCCCCGCACCTAAATGGCCTGAGGGGATGAAAAACGTTG
AGTCGGGATGTTGGAGGATCGAGCCTGATTGCGGGTGATCGCGAGCACAC
CATATTGTCTCACACGTGGTGCACGTACGTAAGTTCCCCGCACTAGCGAC
GTTTCTACGCGGTTTCCAACGACCCTTTACACCCAACAACAAACGAGCGG
TCCGTCCGTGATCTCCTTGCGGCAGCAGCAGCAGCAGCAGCAGTATTTTC
CCACCTTTTGTGACATCAATCAAGCGCAGACATTTATGCACGTGTTGTCG
TGTCAAAGAGACGAAATCCGCCGTGGTGACGGCTGAAACTGCAGGAGGAG
CCGTTGGAAGCCCGGGGCGGATGGAGCGTGTGCCACGCTTCCCGGCTTGG
CTCACAACCTTAATAGAGCGCTACCAAACGTGAGAGCGTCGTCGCCAGGA
CAGAATTAGAGGAAGGTTCGGGAAAAGAGCGGGGGAGGAAGATGTGGGGG
GAACAACAGCCCAAATGAACTAAACATTTTCGGGTGGAACGCATGCAGTC
AATGCACCACGTCGTGTTGTTCGTGTGCAGCTTTCTCTTTGTGCCGAAAG
AAGACTGTCACATGTGAGAAGCAGTGGCAGAGTAAACACGTCGGCGCTAA
GCCATGCTGCTCGCTGACAATGATGGACGCTCTTCTCCTGCCTCCCCCCT
CCTGACTGTTTTTTTGTGTCAAATCAATGCAGTGAGCACAGGCGGTTGTT
GCTGGGGAGCGCGGATACAGGGGCCCGCGGCCACAGATCCGTGCCCGAGA
GCCACGCGCCGCCGGATTCGAAGATGGTAGTGGAAGATATAGCAAAAGGG
CCAACAGAGGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGAAGAAACATC
AGGAGAAACGGCAGCAACAGCAGGGGGCGAAGCGGCAGCAATGGTCAGTG
ATGAAGCAAACGTCGCAGCAGACAGCTCCGCGGAAAATGTCACTGCCGAC
TCCTCCGATGGGAAGCCTTCCCTCGACAGCTTGGTGGAATTCAGCCGGTT
TTTGTCCCTGCTCGTCGAATCGGCGAAACAAGAGGAACAAATGCCGTTGT
CCCCCGCAACTGAGAAGGAACGAGCGGCGCTGGACGAGCTGCTTCGAGCG
AGGCAAGTCGGCGGCGAGGTTTTCACGCGCATGTACAGCCTGTTGTTGCC
CTTAGAGAAATTTGATGGTTTCGGATTATTCATCTACCAAGCCCAGGGGT
CGAGCTCCGAGTGAAGGTCAGGGCCAAAACAATTTGACTTTCACAAAGGT
TTGGCCCTGAGTTTGACCCTGAGCTTCAACCCAAGCTCGGTTGATGGATC
ACACGTAACTGTCTGCTAAGTAGCACTCGTGTGTTCGAGGGAGCACGTGC
GTGTGGCCGTGTTTCTGGTACAGTACGTCAAAAATTGTCGTACAAAAGGA
TGTCACGAAGTTCTTACTCTGTAGGGCGCTCAGGTTTCGAACGAGGCGTT
GTCGAAACCTACGTACCACCCACCGCCCATACAGCCCCCCCCGCCCTCAT
CCCCACCCCGCCGTACCTCTGAGGAATTATCTTCCGCTCAACAAAACCCG
CTGACCGTCTCTCTCTCCAGCGATGACGGGTCCGATCGCGAAGGAGAGTT
CGGCTTCACAACGGAGAAAACATGGGGCGACAAAAGCAACAGCAACAGCG
ACGACGGCGGCGAAGGAAATAAAGAAGAAGACAGCAAGATCCTGCAACCA
CCACCACCACCACCACCAGCAACAACAACAACAACAACGAGGCGGCTGAA
ATCACCACGACCAGTGGGATCACCGGGCTCACCACGGCCGCTCCGGTACT
GGGCGCGAAGAATCCACCAGTTCCTGCTGAGCGTGCGGGAGCTGAGGGCC
GTGCCCGAGCGCGACCCGAACCGCCTCGAGGAACTCATGTCCGAAATAAG
AAGAGGCCGTGGAGGTAGAGGAAAACGAAGTTCTTTGTCCCCTCCCCTGG
GCTTTGTCCCCTCCCCTGGGATCGTTGGAGATGGGGGTTGCTCCTAGGCT
TTCGCCGAAAAAGTGCTATCATTATGAAAGGGTCGAGTCCGCCGCCGGGT
TTGAAGTAGTTGCATTCGAGCGCATCCGGATCGAGAAAAATTAATGGTCC
AG
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Coding sequence (CDS) from alignment at P-littoralis_Contig125:124479..128880+

>mRNA_P-littoralis_Contig125.27.1 ID=mRNA_P-littoralis_Contig125.27.1|Name=mRNA_P-littoralis_Contig125.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1551bp|location=Sequence derived from alignment at P-littoralis_Contig125:124479..128880+ (Pylaiella littoralis U1_48)
ATGGAACCTTTCGGTTCGCCGTCGCAGCCGTCATCGCCACCATCAATACC
AAAACCACCACCAACACTTCCGCCGCTAGCGCTACCGCCACCGGCAAGTC
TGTCTATCATGGAGGCTTCGCTTTCCAACTTTCTGGGCAAAGGCCCATCA
AATGGGACGCCGACGAAGCGCCCTGCTGCCGCGATCAACTTCGCGGACAA
ATATCGGCCGGACGTGCAGCACCTACAAAGCTTGGGACTGACGAGAGCAA
TGCGAGCGTTGGATAGCCTGAGGAAACACAACGCAACAGCGGAGGAGGGA
GATGAGTTAGGAGCCAGCGGGAGGCTTGATGTGAATGATCGAGCGGGGCT
TTTCACCCTCTGCGGGTGCCAACGCGGTTGTCGACTAACCTCCGACGAAA
TGAAGACCATTCAACGCGTGACTCACGGCATGGCCGAAGTCTTTACCAGC
TTGGAGCTTCAATTCAAAGCCCTCGCTCCTCGGATGCGGGGCAGCGATGG
TGAGCAAGCCGACTATCAGGATCAACTGGAGGCGTTTTTTGAAGCGGCAG
GGACGTGGCTGGAGTTTTACGGCGAAGCACGGGCGCTGGCGTCCAGGAAA
CAGTCGGTACTGCGGCTGGAGCTTACTCTCTCTGAACGACGTGCTCGAGG
AGGAGCCGTTGGAAGCCCGGGGCGGATGGAGCGTGTGCCACGCTTCCCGG
CTTGGCTCACAACCTTAATAGAGCGCTACCAAACTGAGCACAGGCGGTTG
TTGCTGGGGAGCGCGGATACAGGGGCCCGCGGCCACAGATCCGTGCCCGA
GAGCCACGCGCCGCCGGATTCGAAGATGGTAGTGGAAGATATAGCAAAAG
GGCCAACAGAGGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGAAGAAACA
TCAGGAGAAACGGCAGCAACAGCAGGGGGCGAAGCGGCAGCAATGGTCAG
TGATGAAGCAAACGTCGCAGCAGACAGCTCCGCGGAAAATGTCACTGCCG
ACTCCTCCGATGGGAAGCCTTCCCTCGACAGCTTGGTGGAATTCAGCCGG
TTTTTGTCCCTGCTCGTCGAATCGGCGAAACAAGAGGAACAAATGCCGTT
GTCCCCCGCAACTGAGAAGGAACGAGCGGCGCTGGACGAGCTGCTTCGAG
CGAGGCAAGTCGGCGGCGAGAAAACATGGGGCGACAAAAGCAACAGCAAC
AGCGACGACGGCGGCGAAGGAAATAAAGAAGAAGACAGCAAGATCCTGCA
ACCACCACCACCACCACCACCAGCAACAACAACAACAACAACGAGGCGGC
TGAAATCACCACGACCAGTGGGATCACCGGGCTCACCACGGCCGCTCCGG
TACTGGGCGCGAAGAATCCACCAGTTCCTGCTGAGCGTGCGGGAGCTGAG
GGCCGTGCCCGAGCGCGACCCGAACCGCCTCGAGGAACTCATGTCCGAAA
TAAGAAGAGGCCGTGGAGGTAGAGGAAAACGAAGTTCTTTGTCCCCTCCC
CTGGGCTTTGTCCCCTCCCCTGGGATCGTTGGAGATGGGGGTTGCTCCTA
G
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