mRNA_P-littoralis_Contig1245.13.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1245.13.1 vs. uniprot
Match: Q6XM36_9PHYC (FirrV-1-A51 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM36_9PHYC) HSP 1 Score: 284 bits (727), Expect = 9.420e-86 Identity = 177/432 (40.97%), Postives = 254/432 (58.80%), Query Frame = 3
Query: 63 SLAPVSNRLSGFYVGGIVGH-QIASMFQKGLNAMTGDVFGSVYAGGLVGLFEETSSSYESDTLVNSMQGNISTL-SGNAGGIVGFLDHKGSNVYHTFLNYMCGDITRGDITTACGGICGKSVDNPNICTSINAMKGYVANTVLGEVGSATIAVTVNTQFGLTFTSDNFSTDSAVSGILTDADYFDLPYALLDGTDKNGVTCDWEFVYGNIAT-LDLVPRPLSIKLSFGAVGGTVAYQLIVQEIAGENGAERIVHTGFTDLEKHINSLTPETEYTVKVYSTADGSQYDFHTQGNATTTANSADNYDVSDFLNQAGAYDISYFDADTRRLFYAVMNDLFTTGDSVVVSVDGATKKSTFVNRGGGADSVVGVEALLLPFEADAGGSQSVSITLSDNSSLALTFDEEAGTIDVGGTTYAPGESAVIDGKKITFVDV 1349
+LA + L G VGG++G Q A+ K LNAMTGD+ G AGG++G+ + ++S D LV SM+GNI+ + + AGG+ G + ++ + Y T LNYM GDI G + ++ TS+ AM GYV + E IA V+ FGLT+T D+ T A+SG+ D++ LPY L GTD G + WEFV+GN+ + LVP+PL I ++F AV G +AY+L + + + V TGFTDL + + L PETEYT+ +YS+ DG+ Y +ATT AN + NY SDF N++G YD+S F +R + + LF+TGD++VV V K + FV G S+VG EAL +PF A QS +ITLSDNS++ L+FDE T+++GG YA GES ++D +K+T V +
Sbjct: 222 NLATFPSTLKGGEVGGVIGRCQFATSISKCLNAMTGDIEGDTLAGGVIGMGQTGNNSQVLDYLVCSMRGNITPVGNARAGGVFGGIQYENDHTYTTLLNYMTGDIXXXXXXXXXXXXTGTTY---SVNTSMVAMNGYVKFAAVFEDPGIVIAH-VDPSFGLTYTIDHGITTDALSGLPIDSESI-LPYFDLTGTDNYGTSYAWEFVFGNLPEGMTLVPKPLFIDVTFAAVSGAIAYKLTKKTTTATDEID--VATGFTDLAQRVRDLQPETEYTISLYSSTDGTTYTPAGTASATTLANVSSNYSASDFSNESGKYDLSKFGKSSRSQLFQLAGTLFSTGDNLVVPVGSGNKTTKFVKVGENT-SIVGEEALFIPFNETA---QSANITLSDNSTVTLSFDESDNTVEIGGEKYASGESTIVDQQKLTIVSI 642
BLAST of mRNA_P-littoralis_Contig1245.13.1 vs. uniprot
Match: B5LWE4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE4_9PHYC) HSP 1 Score: 266 bits (679), Expect = 1.270e-78 Identity = 174/436 (39.91%), Postives = 246/436 (56.42%), Query Frame = 3
Query: 63 SLAPVSNRLSGFYVGGIVGHQIASMFQKGLNAMTGDVFGSVYAGGLVGLFEETSSSYESDTLVNSMQGNIS-TLSGNAGGIVGFLDHKGSNVYHTFLNYMCGDITRGDITTACGGICGKSVDNPNICTSINAMKGYVANTVLGEVGSATIAVTVNTQFGLTFTSDNFSTDSAVSGILTDADYFD----LPYALLDGTDKNGVTCDWEFVYGNIATLDLVPRPLSIKLSFGAVGGTVAYQLIVQEIAGENGAERIVHTGFTDLEKHINSLTPETEYTVKVYSTADG-SQYDFHTQGNATTTANSADNYDVSDFLNQA-GAYDISYFDADTRRLFYAVMNDLFTTGDSVVVSVDGATKKSTFVNRGGGADSVVGVEALLLPFEADAGGSQSVSITLSDNSSLALTFDEEAGTIDVGGTTYAPGESAVIDGKKITFVDV 1349
+LA ++ ++G+ VGG+ G A K LNAM G + +++AGG+ G T SS LVNSM G+I T +G GIVG+L S + +LNYM GDI + + G I + + ++NAMKG + L T+ V ++T+FGLT+T D+ ST + S + T A D LP L GTD V DWEFV+GN T++ V RPL + + FG V G Y+L Q +G E V T F+ EK SL E+ Y +VYS D S+Y Q + TT AN + NY D+ + +D+S FD DT F+ VMN++F TGD++V+ + TKK+ FV GG + G A+L+PF G +Q+ S+TLSDNSS+ LT+DE AGTI +GG Y+PGES ++D +K+T V+V
Sbjct: 222 NLAKFTSTVTGYNVGGVFGDSSAVTITKVLNAMEGSLLAAMFAGGIFGKLRTTGSSQVVGELVNSMNGDIEVTGAGFCAGIVGYL--YSSLNHDKWLNYMSGDIVSAVASRSAGIIGQRVAADYTFTNTLNAMKGSTYHAGLPYDHGETM-VYIDTEFGLTYT-DSLST-ALFSTMDTSAFTLDPETSLPVIALTGTDSESVAYDWEFVFGNNTTIEFVARPLHVDVKFGEVPGATQYRLTKQ--LSPDGVETTVDTDFSTFEKRAESLQSESVYVFRVYSRTDPESEYTLAYQSSTTTLANVSSNYSAGDYKAEGEDQFDLSSFDKDTMANFHEVMNEVFDTGDAIVIPIGSETKKTKFVKLGGSVP-IDGESAVLIPFLETGGSAQTASLTLSDNSSVTLTYDETAGTIGIGGVDYSPGESTIVDSQKLTLVEV 649
BLAST of mRNA_P-littoralis_Contig1245.13.1 vs. uniprot
Match: Q8QNC2_ESV1K (EsV-1-160 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC2_ESV1K) HSP 1 Score: 164 bits (415), Expect = 3.830e-40 Identity = 154/522 (29.50%), Postives = 232/522 (44.44%), Query Frame = 3
Query: 63 SLAPVSNRLSGFYVGGIVGHQIASMFQKGLNAMTGDVFGSVYAGGLVGLFEETSSSYESDTLVNSMQGNISTLSGNAGGIVGFLDHKGSNVYHTFL-NYMCGDITR--------GDITTACGGICGKSVDNPNICTSINAMKGYVANTVLG--EVGSATIAVTVNTQFGLTFTS--DNFSTDSAVSGILTDADYFDLPYALLDGTDKNGVTCDWEFVYGNI----------------------------------------------------------ATLDLV-------------------PRPLSIKLSFGAVGGTVAYQLIVQEIAGENGAERIVHTGFTDLEKHINSLTPETEYTVKVYSTAD-GSQYDFHTQGNATTTANSADNYDVSDFLNQAGAYDISYFDADTRRLFYAVMNDLFTTGDSVVVSVDGATK--KSTFVNRGGGADSVVGVEALLLPFEADAGGSQSVSITLSDNSSLALTFDEEAGTIDVGGTTYAPGESAVIDGKKITFVDV 1349
++A + ++G GG++G A +NAM G++ GS +AGG+ G +++ ST AGGIVG + + N+ T L N+ G ++ G S N SI AM G V V G + + I V+T FG+T D S+++A+ G TD + +L Y L GTD +G T W+FV+ NI ++ D+V PR L+IK+ ++ A + + +G E + H FTD K ++ L ET YT+++Y+ A G +Y Q + TT AN A NYDV+DF++ +GAYDIS D + MNDLF+TG SV V+++ + K K+TFV RGG SV EALLLPF++ +G +QS +ITLSD ++GG ++ G+S ++DGKK+T VD+
Sbjct: 702 NVATFTKGITGDSAGGVIGFNDACNLSCLINAMQGNIVGS-FAGGVCGQIFSGTNAXXXXXXXXXXXXXTST----AGGIVGRVFTRDDNLVFTKLANHXXXXXXXXXXXXXXFGQLSRFSGLTGDISASN-----SIVAMNGAVEQAVRGTEDFTPSAIDAVVDTGFGMTHAGGDDYASSNTALEGYTTDPSFTELSYFPLVGTDPDGTTYSWDFVFANIGGNASYSDYTHLSLHTGQVSAPLFADFGLSETNTQVYATYAHLGDKALFTDESFTVHDSSADVVFDYSKSTVLFGTAPALICDPRALNIKVLLSSLVDVGAVNKLTYQESGTLN-EVVAHENFTDTSKIVSGLKAETTYTIRLYTAAGLGLEYTLLGQDDCTTYANLAKNYDVADFVSASGAYDISDLDDSVS----SAMNDLFSTGASVEVAINDSKKSRKTTFVKRGG-VISVANEEALLLPFDSSSGATQSATITLSDXXXXXXXXXXXXXXXEIGGVSFTHGQSLILDGKKVTVVDI 1207
BLAST of mRNA_P-littoralis_Contig1245.13.1 vs. uniprot
Match: Q8QNM5_ESV1K (EsV-1-39 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNM5_ESV1K) HSP 1 Score: 122 bits (307), Expect = 1.910e-26 Identity = 80/223 (35.87%), Postives = 127/223 (56.95%), Query Frame = 3
Query: 693 LDLVPRPLSIKLSFGAVGGTVAYQLIVQEIAGENGAERIVHTGF--TDLEKHINSLTPETEYTVKVYSTADGSQYDFH-TQGNATTTANSADNYDVSDFLNQAGAYDISYFDADTRRLFYAVMNDLFTTGDSVVVSVDGATK-KSTFVNRGGGADSVVGVEALLLPFEADAGGSQSVSITLSDNSSLALTFDEEAGTIDVGGTTYAPGESAVIDGKKITFVDV 1349
+ +VPRP+SI L++ AV G AY V+ GE AE + T L + +L +T Y+V Y + D + + G T N A N+DVS + ++ G +D+ ++ V+ND+F+TGDSV +S+ G + K+ FV RG A GV ++ +PF A AG QSV++ L+D +++A+ +D+ + +GGTTYA G+S V+DG+K+T V
Sbjct: 394 VSVVPRPMSIDLTWPAVSGATAYG--VKYSVGEMDAEAKTTSAASTTALRHSVRNLLSQTLYSVYTYYSMDDTDPSVPMSSGQYLTLPNVASNHDVSSYADERGGFDLRGLSTESLSALDDVLNDIFSTGDSVTLSLRGKGETKTKFVKRGDTAAIDDGV-SIAMPFSASAGPGQSVTLALTDATTVAVAYDDTTEAVLIGGTTYAAGDSLVLDGQKVTIFSV 613 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1245.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1245.13.1 >prot_P-littoralis_Contig1245.13.1 ID=prot_P-littoralis_Contig1245.13.1|Name=mRNA_P-littoralis_Contig1245.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=406bp MFQKGLNAMTGDVFGSVYAGGLVGLFEETSSSYESDTLVNSMQGNISTLSback to top mRNA from alignment at P-littoralis_Contig1245:38545..39896- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1245.13.1 ID=mRNA_P-littoralis_Contig1245.13.1|Name=mRNA_P-littoralis_Contig1245.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1352bp|location=Sequence derived from alignment at P-littoralis_Contig1245:38545..39896- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1245:38545..39896- >mRNA_P-littoralis_Contig1245.13.1 ID=mRNA_P-littoralis_Contig1245.13.1|Name=mRNA_P-littoralis_Contig1245.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1218bp|location=Sequence derived from alignment at P-littoralis_Contig1245:38545..39896- (Pylaiella littoralis U1_48)back to top |