mRNA_P-littoralis_Contig1245.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1245.13.1
Unique NamemRNA_P-littoralis_Contig1245.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1245.13.1 vs. uniprot
Match: Q6XM36_9PHYC (FirrV-1-A51 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM36_9PHYC)

HSP 1 Score: 284 bits (727), Expect = 9.420e-86
Identity = 177/432 (40.97%), Postives = 254/432 (58.80%), Query Frame = 3
Query:   63 SLAPVSNRLSGFYVGGIVGH-QIASMFQKGLNAMTGDVFGSVYAGGLVGLFEETSSSYESDTLVNSMQGNISTL-SGNAGGIVGFLDHKGSNVYHTFLNYMCGDITRGDITTACGGICGKSVDNPNICTSINAMKGYVANTVLGEVGSATIAVTVNTQFGLTFTSDNFSTDSAVSGILTDADYFDLPYALLDGTDKNGVTCDWEFVYGNIAT-LDLVPRPLSIKLSFGAVGGTVAYQLIVQEIAGENGAERIVHTGFTDLEKHINSLTPETEYTVKVYSTADGSQYDFHTQGNATTTANSADNYDVSDFLNQAGAYDISYFDADTRRLFYAVMNDLFTTGDSVVVSVDGATKKSTFVNRGGGADSVVGVEALLLPFEADAGGSQSVSITLSDNSSLALTFDEEAGTIDVGGTTYAPGESAVIDGKKITFVDV 1349
            +LA   + L G  VGG++G  Q A+   K LNAMTGD+ G   AGG++G+ +  ++S   D LV SM+GNI+ + +  AGG+ G + ++  + Y T LNYM GDI             G +    ++ TS+ AM GYV    + E     IA  V+  FGLT+T D+  T  A+SG+  D++   LPY  L GTD  G +  WEFV+GN+   + LVP+PL I ++F AV G +AY+L  +     +  +  V TGFTDL + +  L PETEYT+ +YS+ DG+ Y      +ATT AN + NY  SDF N++G YD+S F   +R   + +   LF+TGD++VV V    K + FV  G    S+VG EAL +PF   A   QS +ITLSDNS++ L+FDE   T+++GG  YA GES ++D +K+T V +
Sbjct:  222 NLATFPSTLKGGEVGGVIGRCQFATSISKCLNAMTGDIEGDTLAGGVIGMGQTGNNSQVLDYLVCSMRGNITPVGNARAGGVFGGIQYENDHTYTTLLNYMTGDIXXXXXXXXXXXXTGTTY---SVNTSMVAMNGYVKFAAVFEDPGIVIAH-VDPSFGLTYTIDHGITTDALSGLPIDSESI-LPYFDLTGTDNYGTSYAWEFVFGNLPEGMTLVPKPLFIDVTFAAVSGAIAYKLTKKTTTATDEID--VATGFTDLAQRVRDLQPETEYTISLYSSTDGTTYTPAGTASATTLANVSSNYSASDFSNESGKYDLSKFGKSSRSQLFQLAGTLFSTGDNLVVPVGSGNKTTKFVKVGENT-SIVGEEALFIPFNETA---QSANITLSDNSTVTLSFDESDNTVEIGGEKYASGESTIVDQQKLTIVSI 642          
BLAST of mRNA_P-littoralis_Contig1245.13.1 vs. uniprot
Match: B5LWE4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE4_9PHYC)

HSP 1 Score: 266 bits (679), Expect = 1.270e-78
Identity = 174/436 (39.91%), Postives = 246/436 (56.42%), Query Frame = 3
Query:   63 SLAPVSNRLSGFYVGGIVGHQIASMFQKGLNAMTGDVFGSVYAGGLVGLFEETSSSYESDTLVNSMQGNIS-TLSGNAGGIVGFLDHKGSNVYHTFLNYMCGDITRGDITTACGGICGKSVDNPNICTSINAMKGYVANTVLGEVGSATIAVTVNTQFGLTFTSDNFSTDSAVSGILTDADYFD----LPYALLDGTDKNGVTCDWEFVYGNIATLDLVPRPLSIKLSFGAVGGTVAYQLIVQEIAGENGAERIVHTGFTDLEKHINSLTPETEYTVKVYSTADG-SQYDFHTQGNATTTANSADNYDVSDFLNQA-GAYDISYFDADTRRLFYAVMNDLFTTGDSVVVSVDGATKKSTFVNRGGGADSVVGVEALLLPFEADAGGSQSVSITLSDNSSLALTFDEEAGTIDVGGTTYAPGESAVIDGKKITFVDV 1349
            +LA  ++ ++G+ VGG+ G   A    K LNAM G +  +++AGG+ G    T SS     LVNSM G+I  T +G   GIVG+L    S  +  +LNYM GDI     + + G I  +   +     ++NAMKG   +  L      T+ V ++T+FGLT+T D+ ST +  S + T A   D    LP   L GTD   V  DWEFV+GN  T++ V RPL + + FG V G   Y+L  Q     +G E  V T F+  EK   SL  E+ Y  +VYS  D  S+Y    Q + TT AN + NY   D+  +    +D+S FD DT   F+ VMN++F TGD++V+ +   TKK+ FV  GG    + G  A+L+PF    G +Q+ S+TLSDNSS+ LT+DE AGTI +GG  Y+PGES ++D +K+T V+V
Sbjct:  222 NLAKFTSTVTGYNVGGVFGDSSAVTITKVLNAMEGSLLAAMFAGGIFGKLRTTGSSQVVGELVNSMNGDIEVTGAGFCAGIVGYL--YSSLNHDKWLNYMSGDIVSAVASRSAGIIGQRVAADYTFTNTLNAMKGSTYHAGLPYDHGETM-VYIDTEFGLTYT-DSLST-ALFSTMDTSAFTLDPETSLPVIALTGTDSESVAYDWEFVFGNNTTIEFVARPLHVDVKFGEVPGATQYRLTKQ--LSPDGVETTVDTDFSTFEKRAESLQSESVYVFRVYSRTDPESEYTLAYQSSTTTLANVSSNYSAGDYKAEGEDQFDLSSFDKDTMANFHEVMNEVFDTGDAIVIPIGSETKKTKFVKLGGSVP-IDGESAVLIPFLETGGSAQTASLTLSDNSSVTLTYDETAGTIGIGGVDYSPGESTIVDSQKLTLVEV 649          
BLAST of mRNA_P-littoralis_Contig1245.13.1 vs. uniprot
Match: Q8QNC2_ESV1K (EsV-1-160 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC2_ESV1K)

HSP 1 Score: 164 bits (415), Expect = 3.830e-40
Identity = 154/522 (29.50%), Postives = 232/522 (44.44%), Query Frame = 3
Query:   63 SLAPVSNRLSGFYVGGIVGHQIASMFQKGLNAMTGDVFGSVYAGGLVGLFEETSSSYESDTLVNSMQGNISTLSGNAGGIVGFLDHKGSNVYHTFL-NYMCGDITR--------GDITTACGGICGKSVDNPNICTSINAMKGYVANTVLG--EVGSATIAVTVNTQFGLTFTS--DNFSTDSAVSGILTDADYFDLPYALLDGTDKNGVTCDWEFVYGNI----------------------------------------------------------ATLDLV-------------------PRPLSIKLSFGAVGGTVAYQLIVQEIAGENGAERIVHTGFTDLEKHINSLTPETEYTVKVYSTAD-GSQYDFHTQGNATTTANSADNYDVSDFLNQAGAYDISYFDADTRRLFYAVMNDLFTTGDSVVVSVDGATK--KSTFVNRGGGADSVVGVEALLLPFEADAGGSQSVSITLSDNSSLALTFDEEAGTIDVGGTTYAPGESAVIDGKKITFVDV 1349
            ++A  +  ++G   GG++G   A      +NAM G++ GS +AGG+ G     +++              ST    AGGIVG +  +  N+  T L N+               G ++   G     S  N     SI AM G V   V G  +   + I   V+T FG+T     D  S+++A+ G  TD  + +L Y  L GTD +G T  W+FV+ NI                                                          ++ D+V                   PR L+IK+   ++    A   +  + +G    E + H  FTD  K ++ L  ET YT+++Y+ A  G +Y    Q + TT AN A NYDV+DF++ +GAYDIS  D        + MNDLF+TG SV V+++ + K  K+TFV RGG   SV   EALLLPF++ +G +QS +ITLSD               ++GG ++  G+S ++DGKK+T VD+
Sbjct:  702 NVATFTKGITGDSAGGVIGFNDACNLSCLINAMQGNIVGS-FAGGVCGQIFSGTNAXXXXXXXXXXXXXTST----AGGIVGRVFTRDDNLVFTKLANHXXXXXXXXXXXXXXFGQLSRFSGLTGDISASN-----SIVAMNGAVEQAVRGTEDFTPSAIDAVVDTGFGMTHAGGDDYASSNTALEGYTTDPSFTELSYFPLVGTDPDGTTYSWDFVFANIGGNASYSDYTHLSLHTGQVSAPLFADFGLSETNTQVYATYAHLGDKALFTDESFTVHDSSADVVFDYSKSTVLFGTAPALICDPRALNIKVLLSSLVDVGAVNKLTYQESGTLN-EVVAHENFTDTSKIVSGLKAETTYTIRLYTAAGLGLEYTLLGQDDCTTYANLAKNYDVADFVSASGAYDISDLDDSVS----SAMNDLFSTGASVEVAINDSKKSRKTTFVKRGG-VISVANEEALLLPFDSSSGATQSATITLSDXXXXXXXXXXXXXXXEIGGVSFTHGQSLILDGKKVTVVDI 1207          
BLAST of mRNA_P-littoralis_Contig1245.13.1 vs. uniprot
Match: Q8QNM5_ESV1K (EsV-1-39 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNM5_ESV1K)

HSP 1 Score: 122 bits (307), Expect = 1.910e-26
Identity = 80/223 (35.87%), Postives = 127/223 (56.95%), Query Frame = 3
Query:  693 LDLVPRPLSIKLSFGAVGGTVAYQLIVQEIAGENGAERIVHTGF--TDLEKHINSLTPETEYTVKVYSTADGSQYDFH-TQGNATTTANSADNYDVSDFLNQAGAYDISYFDADTRRLFYAVMNDLFTTGDSVVVSVDGATK-KSTFVNRGGGADSVVGVEALLLPFEADAGGSQSVSITLSDNSSLALTFDEEAGTIDVGGTTYAPGESAVIDGKKITFVDV 1349
            + +VPRP+SI L++ AV G  AY   V+   GE  AE    +    T L   + +L  +T Y+V  Y + D +      + G   T  N A N+DVS + ++ G +D+     ++      V+ND+F+TGDSV +S+ G  + K+ FV RG  A    GV ++ +PF A AG  QSV++ L+D +++A+ +D+    + +GGTTYA G+S V+DG+K+T   V
Sbjct:  394 VSVVPRPMSIDLTWPAVSGATAYG--VKYSVGEMDAEAKTTSAASTTALRHSVRNLLSQTLYSVYTYYSMDDTDPSVPMSSGQYLTLPNVASNHDVSSYADERGGFDLRGLSTESLSALDDVLNDIFSTGDSVTLSLRGKGETKTKFVKRGDTAAIDDGV-SIAMPFSASAGPGQSVTLALTDATTVAVAYDDTTEAVLIGGTTYAAGDSLVLDGQKVTIFSV 613          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1245.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q6XM36_9PHYC9.420e-8640.97FirrV-1-A51 n=1 Tax=Feldmannia irregularis virus a... [more]
B5LWE4_9PHYC1.270e-7839.91Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q8QNC2_ESV1K3.830e-4029.50EsV-1-160 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
Q8QNM5_ESV1K1.910e-2635.87EsV-1-39 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1245contigP-littoralis_Contig1245:38545..39896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1352
Hectar predicted targeting categoryother localisation
Exons1
Cds size1218
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789544.413125-CDS-P-littoralis_Contig1245:38544..397621680789544.413125-CDS-P-littoralis_Contig1245:38544..39762Pylaiella littoralis U1_48CDSP-littoralis_Contig1245 38545..39762 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789544.4282453-UTR-P-littoralis_Contig1245:39762..398961680789544.4282453-UTR-P-littoralis_Contig1245:39762..39896Pylaiella littoralis U1_48UTRP-littoralis_Contig1245 39763..39896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1245.13.1prot_P-littoralis_Contig1245.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1245 38545..39762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1245.13.1

>prot_P-littoralis_Contig1245.13.1 ID=prot_P-littoralis_Contig1245.13.1|Name=mRNA_P-littoralis_Contig1245.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=406bp
MFQKGLNAMTGDVFGSVYAGGLVGLFEETSSSYESDTLVNSMQGNISTLS
GNAGGIVGFLDHKGSNVYHTFLNYMCGDITRGDITTACGGICGKSVDNPN
ICTSINAMKGYVANTVLGEVGSATIAVTVNTQFGLTFTSDNFSTDSAVSG
ILTDADYFDLPYALLDGTDKNGVTCDWEFVYGNIATLDLVPRPLSIKLSF
GAVGGTVAYQLIVQEIAGENGAERIVHTGFTDLEKHINSLTPETEYTVKV
YSTADGSQYDFHTQGNATTTANSADNYDVSDFLNQAGAYDISYFDADTRR
LFYAVMNDLFTTGDSVVVSVDGATKKSTFVNRGGGADSVVGVEALLLPFE
ADAGGSQSVSITLSDNSSLALTFDEEAGTIDVGGTTYAPGESAVIDGKKI
TFVDV*
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mRNA from alignment at P-littoralis_Contig1245:38545..39896-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1245.13.1 ID=mRNA_P-littoralis_Contig1245.13.1|Name=mRNA_P-littoralis_Contig1245.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1352bp|location=Sequence derived from alignment at P-littoralis_Contig1245:38545..39896- (Pylaiella littoralis U1_48)
AAGCTTTTCATCCCAGGCCGTGTTGGCCGGATTGCCCTCATCACCACACA ACCCCTAGCTAGAGCTTAGCCCCAGTATCAAACAGACTCAGTGGGTTTTA TGTAGGTGGAATTGTGGGACACCAAATAGCCTCCATGTTCCAAAAGGGTT TGAATGCGATGACAGGTGACGTATTTGGCAGTGTATACGCCGGTGGACTT GTTGGCCTCTTTGAAGAAACCTCATCTTCCTATGAGTCCGACACGTTAGT CAATTCTATGCAGGGAAATATTTCGACCCTTTCTGGCAATGCGGGTGGCA TAGTGGGGTTCCTAGATCATAAAGGCAGTAATGTCTACCACACTTTCTTG AATTATATGTGCGGTGACATAACAAGAGGCGATATCACAACTGCGTGTGG TGGTATTTGCGGGAAGTCTGTCGACAACCCGAATATCTGCACGTCGATCA ATGCGATGAAAGGCTATGTGGCCAACACGGTACTCGGGGAGGTAGGTTCG GCTACTATAGCTGTGACTGTAAACACTCAATTCGGCCTCACATTCACCAG CGACAATTTCAGTACTGATAGCGCCGTGTCTGGCATTTTGACAGATGCCG ACTATTTCGATCTCCCGTACGCCCTGTTGGATGGAACGGATAAAAATGGG GTCACGTGCGACTGGGAGTTCGTGTACGGAAACATCGCCACACTTGATCT TGTACCAAGACCGCTGAGCATCAAGTTGTCTTTCGGTGCAGTCGGGGGGA CGGTCGCGTACCAACTTATTGTACAGGAAATAGCTGGTGAGAACGGTGCG GAGAGAATCGTCCACACGGGTTTCACCGATCTTGAAAAACACATCAACTC CCTCACTCCCGAGACGGAGTACACCGTGAAAGTATACTCCACGGCGGATG GTTCTCAGTACGACTTCCACACCCAAGGCAACGCCACAACAACGGCGAAT TCGGCTGACAACTATGACGTTTCGGATTTCCTAAACCAGGCCGGGGCGTA CGACATATCTTATTTTGATGCAGATACAAGGCGATTGTTTTATGCGGTCA TGAACGACCTGTTCACGACGGGGGACTCTGTAGTCGTATCCGTCGATGGG GCAACGAAGAAATCTACATTTGTGAATAGAGGGGGGGGGGCAGACTCCGT TGTCGGTGTGGAAGCACTTTTGCTCCCATTTGAAGCGGATGCGGGAGGGT CTCAGTCTGTGTCAATCACACTTTCTGACAATTCGTCTCTTGCCCTTACG TTCGACGAGGAGGCTGGGACGATTGATGTGGGGGGCACCACGTACGCTCC GGGGGAATCTGCAGTGATCGACGGCAAGAAGATTACATTCGTGGACGTGT AA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1245:38545..39896-

>mRNA_P-littoralis_Contig1245.13.1 ID=mRNA_P-littoralis_Contig1245.13.1|Name=mRNA_P-littoralis_Contig1245.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1218bp|location=Sequence derived from alignment at P-littoralis_Contig1245:38545..39896- (Pylaiella littoralis U1_48)
ATGTTCCAAAAGGGTTTGAATGCGATGACAGGTGACGTATTTGGCAGTGT
ATACGCCGGTGGACTTGTTGGCCTCTTTGAAGAAACCTCATCTTCCTATG
AGTCCGACACGTTAGTCAATTCTATGCAGGGAAATATTTCGACCCTTTCT
GGCAATGCGGGTGGCATAGTGGGGTTCCTAGATCATAAAGGCAGTAATGT
CTACCACACTTTCTTGAATTATATGTGCGGTGACATAACAAGAGGCGATA
TCACAACTGCGTGTGGTGGTATTTGCGGGAAGTCTGTCGACAACCCGAAT
ATCTGCACGTCGATCAATGCGATGAAAGGCTATGTGGCCAACACGGTACT
CGGGGAGGTAGGTTCGGCTACTATAGCTGTGACTGTAAACACTCAATTCG
GCCTCACATTCACCAGCGACAATTTCAGTACTGATAGCGCCGTGTCTGGC
ATTTTGACAGATGCCGACTATTTCGATCTCCCGTACGCCCTGTTGGATGG
AACGGATAAAAATGGGGTCACGTGCGACTGGGAGTTCGTGTACGGAAACA
TCGCCACACTTGATCTTGTACCAAGACCGCTGAGCATCAAGTTGTCTTTC
GGTGCAGTCGGGGGGACGGTCGCGTACCAACTTATTGTACAGGAAATAGC
TGGTGAGAACGGTGCGGAGAGAATCGTCCACACGGGTTTCACCGATCTTG
AAAAACACATCAACTCCCTCACTCCCGAGACGGAGTACACCGTGAAAGTA
TACTCCACGGCGGATGGTTCTCAGTACGACTTCCACACCCAAGGCAACGC
CACAACAACGGCGAATTCGGCTGACAACTATGACGTTTCGGATTTCCTAA
ACCAGGCCGGGGCGTACGACATATCTTATTTTGATGCAGATACAAGGCGA
TTGTTTTATGCGGTCATGAACGACCTGTTCACGACGGGGGACTCTGTAGT
CGTATCCGTCGATGGGGCAACGAAGAAATCTACATTTGTGAATAGAGGGG
GGGGGGCAGACTCCGTTGTCGGTGTGGAAGCACTTTTGCTCCCATTTGAA
GCGGATGCGGGAGGGTCTCAGTCTGTGTCAATCACACTTTCTGACAATTC
GTCTCTTGCCCTTACGTTCGACGAGGAGGCTGGGACGATTGATGTGGGGG
GCACCACGTACGCTCCGGGGGAATCTGCAGTGATCGACGGCAAGAAGATT
ACATTCGTGGACGTGTAA
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