mRNA_P-littoralis_Contig1236.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1236.12.1
Unique NamemRNA_P-littoralis_Contig1236.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1236.12.1 vs. uniprot
Match: A0A6H5J860_9PHAE (SUN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J860_9PHAE)

HSP 1 Score: 316 bits (809), Expect = 1.640e-97
Identity = 156/208 (75.00%), Postives = 171/208 (82.21%), Query Frame = 2
Query:   14 GRDRGGGDAGCVPEEVVRGEVDVAIGKLRADGTGLRDYANAAVGGRVLASRDMVSDTYTPASWWGSSWYWHRAGVENGIGPVESVISEDSSLGACWAMSGSEGLVTVQLPREITVDAVSVEHSSRMVTAESASAPKDFEVWGMRSKDDSFRVELVSGTYDVDGRPIQTFPTTTRPPGVNFSIIQFKILSNWGKRDYTCLYRVRVHGRE 637
            G D  GG  GCV E VVR EVDVAIGKL ADGTG+RDYANAA+GG+VL S+ MVS+TYTP+SWWG S YWH AGVENG+GPVESVISE SSLGACWAMSGSEGLVT+QLP +ITVD VSVEH SRMVT ES SAPK+ EVWGMR+K D+   +L S  YDVDGRPIQTFP    P GV F +IQFKILSNWG  DYTCLYR+RVHGRE
Sbjct:  328 GSDESGGGGGCVSEGVVREEVDVAIGKLMADGTGMRDYANAALGGKVLTSKGMVSETYTPSSWWGPSRYWHGAGVENGVGPVESVISEGSSLGACWAMSGSEGLVTIQLPEKITVDGVSVEHVSRMVTTESGSAPKEIEVWGMRNKKDNNPAKLGSAVYDVDGRPIQTFPI--EPLGVQFKLIQFKILSNWGNPDYTCLYRLRVHGRE 533          
BLAST of mRNA_P-littoralis_Contig1236.12.1 vs. uniprot
Match: D7FIC3_ECTSI (SUN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC3_ECTSI)

HSP 1 Score: 304 bits (779), Expect = 1.140e-94
Identity = 148/198 (74.75%), Postives = 163/198 (82.32%), Query Frame = 2
Query:   41 GCVPEEVVRGEVDVAIGKLRADGTGLRDYANAAVGGRVLASRDMVSDTYTPASWWGSSWYWHRAGVENGIGPVESVISEDSSLGACWAMSGSEGLVTVQLPREITVDAVSVEHSSRMVTAESASAPKDFEVWGMRSKDDSFRVELVSGTYDVDGRPIQTFPTTTRPPGVNFSIIQFKILSNWGKRDYTCLYRVRVHGR 634
            GCV E  VR EVDVAIGKL ADGTG+RDYANAA+GG+VL S+ MVSDTYTP+SWWG S YWH AGVENG+GPVESVISE SSLGACWAMSGSEGLVT+QLP++ITVD VSVEH SRMVT ES SAPK+ EVWGM++K D    +L S  YDVDGRPIQTF     PPG    +IQFKILSNWG  DYTCLYR+RVHGR
Sbjct:  217 GCVSEGAVREEVDVAIGKLMADGTGMRDYANAALGGKVLTSKGMVSDTYTPSSWWGPSRYWHGAGVENGVGPVESVISEGSSLGACWAMSGSEGLVTIQLPKKITVDGVSVEHVSRMVTTESGSAPKELEVWGMKNKKDKKPAKLGSAVYDVDGRPIQTF--RIEPPGEQIELIQFKILSNWGNPDYTCLYRLRVHGR 412          
BLAST of mRNA_P-littoralis_Contig1236.12.1 vs. uniprot
Match: A0A835ZD47_9STRA (UNC-like C-terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD47_9STRA)

HSP 1 Score: 127 bits (319), Expect = 5.810e-30
Identity = 74/201 (36.82%), Postives = 110/201 (54.73%), Query Frame = 2
Query:   44 CVPEEVVRGEVDVAIGKLRADGTGLRDYANAAVGGRVLASRDMVSDTYTPASWWGSSWYWHRA-GVENGIGPVESVISEDSSLGACWAMSGSEGLVTVQLPREITVDAVSVEHSSRMVTAESASAPKDFEVWGMRSKDDSFR-VELVSGTYDVDGRPIQTFPTTTRPPGVN-FSIIQFKILSNWGKRDYTCLYRVRVHGRE 637
            C+       +V  AI     +    +DYA  A GG+V+  R + S T+T          W  A G+E  +G     IS D+SL ACW M G  G +TV+L   I VDA+++EH+S  ++ + +SAPK F + G+   D+S + V L+ G YD+   P Q F     P     FS++  K+L N+GK +YTC+YR+++HGRE
Sbjct:   30 CISLAEAEAQVHTAIDIAYVEPEQPKDYAWRAAGGQVVQKRGLTSATHTRTM----LERWQLALGMEAAVGGPNEAISSDNSLSACWGMDGQSGQLTVKLATAIRVDAITLEHASAQISPDRSSAPKTFHLLGL--VDESAQPVPLLQGEYDLSASPQQLFRVPVGPYSQTAFSMVTLKVLDNYGKPEYTCIYRLQLHGRE 224          
BLAST of mRNA_P-littoralis_Contig1236.12.1 vs. uniprot
Match: A0A7M4FD02_CROPO (SUN domain-containing protein 3-like n=2 Tax=Crocodylus porosus TaxID=8502 RepID=A0A7M4FD02_CROPO)

HSP 1 Score: 122 bits (307), Expect = 2.660e-28
Identity = 71/185 (38.38%), Postives = 106/185 (57.30%), Query Frame = 2
Query:   92 KLRADGTGLRDYANAAVGGRVLASRDMVSDTYTPASWWGSSWYWHRAGVENGIGPVESVISEDSSLGACWAMSGSEGLVTVQLPREITVDAVSVEHSSRMVT--AESASAPKDFEVWGMRSKDDSFRVELVSGT--YDVDGRPIQTFPTTTRPPGVNFSIIQFKILSNWGKRDYTCLYRVRVHGR 634
            K+  D   + D+A   +G  + ASR   S +Y P +  GS   W      +   P ++++  D S G+CWA  GS+G V ++LP +I   AV+++H S+ ++   E  SAPKDF V+G+   D+    E++ G   YD++   IQTF      P V+F  I+F +LSNWG  DYTC+YRVRVHG+
Sbjct:   46 KIYEDDVQMPDWAQKTIGATIDASR--TSKSYEPRNTEGS---WFTLSFLSSANPPDTILQPDVSPGSCWAFPGSQGQVVIKLPEKIQPTAVTIQHISKAISPSGEVTSAPKDFAVYGL---DEETETEILLGKFMYDLEKEVIQTFQLQIEIP-VSFIYIKFCLLSNWGHSDYTCIYRVRVHGK 221          
BLAST of mRNA_P-littoralis_Contig1236.12.1 vs. uniprot
Match: A0A316VPM0_9BASI (SUN domain-containing protein n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316VPM0_9BASI)

HSP 1 Score: 114 bits (285), Expect = 2.160e-25
Identity = 79/208 (37.98%), Postives = 116/208 (55.77%), Query Frame = 2
Query:   74 VDVAIGKLRADGTGLRDYANAAVGGRVLASRDMVSDTY-------TPASWWGSSWYWHRAGVENGIGPVESVISEDSSLGACWAMSGSEGLVTVQLPREITVDAVSVEHSSRMVTAE-SASAPKDFEVWGMRSKDD--------SFRVELVSG-TYDV-DGRPIQTFPTTTRPPGVNF--SIIQFKILSNWGKRDYTCLYRVRVHGRE 637
            ++ A+    AD  G RDYA  + GGR++ S    S T+       +P +W+  +    R G E G  PV +++  D + G CWA +GSEG + + L R + V  +++EH+S  ++ + S SAP+D  VWG+  +D         S R  L+S  TYDV   + IQ FP +     +N   +I+Q +I SN GK+DYTCLYRVRVHG E
Sbjct:    2 IEDALETYSADRIGERDYALYSSGGRIIPS--FTSPTFGLRKRSSSPLAWFSKAPLLERVGAE-GQPPVIALVP-DVTPGMCWAFAGSEGTLGISLARRVLVSKITMEHTSPSISHDQSISAPRDVTVWGIGEEDSILPAPIPPSDRHLLLSTFTYDVLASKMIQQFPISREAEQLNIPIAIVQMQIHSNHGKKDYTCLYRVRVHGNE 205          
BLAST of mRNA_P-littoralis_Contig1236.12.1 vs. uniprot
Match: A0A0K2TYC1_LEPSM (Sad1 and UNC84 domain containing 2 [Falco peregrinus] n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2TYC1_LEPSM)

HSP 1 Score: 120 bits (302), Expect = 2.720e-25
Identity = 69/190 (36.32%), Postives = 107/190 (56.32%), Query Frame = 2
Query:   74 VDVAIGKLRADGTGLRDYANAAVGGRVLASR--DMVSDTYTPASWWGSSWYWHRAGVENGIGPVESVISEDSSLGACWAMSGSEGLVTVQLPREITVDAVSVEHSSRMVTAESA--SAPKDFEVWGMRSKDDSFRVELVSGTYDVDGRPIQTFPTTTRPPGVNFSIIQFKILSNWGKRDYTCLYRVRVHG 631
            V+ A+ K  AD TG+ D+A    GG ++++R  +    ++   S +G  ++W R           +++   S+ G CWA  GS+G V ++L R + V+AVS+EH S+M+  E    SAPK F V G+ S DD   +   + TY+ +G P+QTF   T  P     +++ K+LSN+G   YTC+YR RVHG
Sbjct:  394 VEKALIKYDADKTGMFDFALETAGGTIMSTRCTETHDVSWAVHSIFGIPFWWERNNAR-------TILQPSSNPGQCWAFKGSQGSVVIELSRPVNVEAVSLEHISKMMAPERKILSAPKRFAVLGLTSLDDESPIVFGNFTYNDNGNPVQTFHVPTSSP---VKLVELKVLSNYGHLVYTCVYRFRVHG 573          
BLAST of mRNA_P-littoralis_Contig1236.12.1 vs. uniprot
Match: A0A1U7S647_ALLSI (SUN domain-containing protein 3-like n=7 Tax=Alligator TaxID=8495 RepID=A0A1U7S647_ALLSI)

HSP 1 Score: 119 bits (297), Expect = 3.440e-25
Identity = 69/185 (37.30%), Postives = 104/185 (56.22%), Query Frame = 2
Query:   92 KLRADGTGLRDYANAAVGGRVLASRDMVSDTYTPASWWGSSWYWHRAGVENGIGPVESVISEDSSLGACWAMSGSEGLVTVQLPREITVDAVSVEHSSRMVT--AESASAPKDFEVWGMRSKDDSFRVELVSGT--YDVDGRPIQTFPTTTRPPGVNFSIIQFKILSNWGKRDYTCLYRVRVHGR 634
            K+  D   + D+A   +G  + ASR   S +Y P +   S   W      +   P ++++  D S G+CWA  GS+G V ++LP +I   AV+++H S+ ++   E  SAPKDF V+G+   D+    E++ G   YD++   IQTF      P  +F  I+F +LSNWG  DYTC+YRVRVHG+
Sbjct:  259 KIYEDDVQMPDWAQKTIGATIDASR--TSKSYEPRNEEDS---WFSLSFLSSANPPDTILQPDVSPGSCWAFPGSQGQVVIKLPEKIQPTAVTIQHISKAISPSGEVTSAPKDFAVYGL---DEKTETEILLGKFMYDLEKEVIQTFQLQMELPA-SFIYIKFSMLSNWGHSDYTCIYRVRVHGK 434          
BLAST of mRNA_P-littoralis_Contig1236.12.1 vs. uniprot
Match: UPI001893E75E (uncharacterized protein LOC119399330 n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI001893E75E)

HSP 1 Score: 120 bits (302), Expect = 5.210e-25
Identity = 76/194 (39.18%), Postives = 105/194 (54.12%), Query Frame = 2
Query:   56 EVVRGEVDVAIGKLRADGTGLRDYANAAVGGRVLASRDMVSDTYTPASWWGSSWYWHRAGVENGIGPVESVISEDSSLGACWAMSGSEGLVTVQLPREITVDAVSVEHSSRMVTAE--SASAPKDFEVWGMRSKDDSFRVELVSGTYDVDGRPIQTFPTTTRPPGVNFSIIQFKILSNWGKRDYTCLYRVRVHG 631
            + V   V  A+ K  AD TGL DYA  + GG V+ +R   +DTYT  S     +Y     +          IS     G CWA  GS+G + V+L + I V A S+EH SR + +   ++SAP++F++WG+ S+ DS    L S TYD DG  +Q F      P   +  ++ KILSN G  +YTCLYR+RVHG
Sbjct:  605 DTVTRVVKEALSKYDADKTGLPDYALESAGGSVVNTR--CTDTYTERS---PKYYMFGLPLWTFYRTAREAISPGMHPGECWAFRGSQGHLVVRLAQPIKVTAFSIEHISRSLVSSGHTSSAPREFQMWGLDSETDSPGRLLGSYTYDADGDTLQYFIVQDPEPD-KYEYVEMKILSNHGNLEYTCLYRLRVHG 792          
BLAST of mRNA_P-littoralis_Contig1236.12.1 vs. uniprot
Match: L7LUZ9_RHIPC (Putative spindle pole body protein n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7LUZ9_RHIPC)

HSP 1 Score: 120 bits (302), Expect = 5.240e-25
Identity = 76/194 (39.18%), Postives = 106/194 (54.64%), Query Frame = 2
Query:   56 EVVRGEVDVAIGKLRADGTGLRDYANAAVGGRVLASRDMVSDTYTPASWWGSSWYWHRAGVENGIGPVESVISEDSSLGACWAMSGSEGLVTVQLPREITVDAVSVEHSSRMV--TAESASAPKDFEVWGMRSKDDSFRVELVSGTYDVDGRPIQTFPTTTRPPGVNFSIIQFKILSNWGKRDYTCLYRVRVHG 631
            + V   V  A+ K  AD TGL DYA  + GG V+ +R   +DTYT  S     +Y     +          I+     G CWA  GS+G + V+L + I V A SVEH SR +  +  ++SAP++FE+WG+ S+ DS    L + TYD +G  +Q F      P V +  ++ KILSN G  +YTCLYR+RVHG
Sbjct:  609 DAVTRVVKEALAKYDADKTGLPDYALESAGGSVVNTR--CTDTYTERS---PKYYMFGLPLWTFYRTAREAITPGMHPGECWAFRGSQGHLVVKLAQPIKVTAFSVEHISRSLVGSGHTSSAPREFEMWGLDSETDSPGRLLGTYTYDAEGDTLQYFIVQDTEPAV-YEYVEMKILSNHGNLEYTCLYRLRVHG 796          
BLAST of mRNA_P-littoralis_Contig1236.12.1 vs. uniprot
Match: A0A151WZS1_9HYME (SUN domain-containing protein 2 n=6 Tax=Myrmicinae TaxID=34695 RepID=A0A151WZS1_9HYME)

HSP 1 Score: 114 bits (284), Expect = 1.180e-24
Identity = 77/206 (37.38%), Postives = 101/206 (49.03%), Query Frame = 2
Query:   44 CVPEEVVRGEVDVAIGKLRADGTGLRDYANAAVGGRVLASRDMVSDTYTPASWWGSSWYWHRAGVENGIG-PV-------ESVISEDSSLGACWAMSGSEGLVTVQLPREITVDAVSVEHSSRMV--TAESASAPKDFEVWGMRSKDDSFRVELVSGTYDVDGRPIQTFPTTTRPPGVNFSIIQFKILSNWGKRDYTCLYRVRVHG 631
             +  E VR  V   +    AD TG  DYA  + GG +L++RD  S             Y   A V N  G P+        +VI      G CWA  GS G V ++L   + V  VS+EH S ++  T E+A+APKDF VWG+   DD       S  YD  G P+Q F    R   V + II+ K+ SN G  +YTC+YR+RVHG
Sbjct:   79 ALSPETVRNMVKNELQTYDADKTGRTDYALESSGGAILSTRDTES-------------YSTGAPVLNLFGIPLCQQQNTPRAVIQIGVLPGECWAFKGSSGSVVIRLLGHVHVSGVSLEHISSLISPTGETATAPKDFSVWGLSDLDDKKPFSFGSFIYDNTGSPLQYFEVQNRAKKV-YDIIEVKVHSNSGNPEYTCIYRIRVHG 270          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1236.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J860_9PHAE1.640e-9775.00SUN domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FIC3_ECTSI1.140e-9474.75SUN domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZD47_9STRA5.810e-3036.82UNC-like C-terminal-domain-containing protein n=1 ... [more]
A0A7M4FD02_CROPO2.660e-2838.38SUN domain-containing protein 3-like n=2 Tax=Croco... [more]
A0A316VPM0_9BASI2.160e-2537.98SUN domain-containing protein n=1 Tax=Meira milton... [more]
A0A0K2TYC1_LEPSM2.720e-2536.32Sad1 and UNC84 domain containing 2 [Falco peregrin... [more]
A0A1U7S647_ALLSI3.440e-2537.30SUN domain-containing protein 3-like n=7 Tax=Allig... [more]
UPI001893E75E5.210e-2539.18uncharacterized protein LOC119399330 n=1 Tax=Rhipi... [more]
L7LUZ9_RHIPC5.240e-2539.18Putative spindle pole body protein n=1 Tax=Rhipice... [more]
A0A151WZS1_9HYME1.180e-2437.38SUN domain-containing protein 2 n=6 Tax=Myrmicinae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1236contigP-littoralis_Contig1236:47658..52162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FIC3
Preferred nameSUN3
PFAMsSad1_UNC
Model size1706
Max annot lvl2759|Eukaryota
KEGG koko:K06545,ko:K19347,ko:K21874,ko:K21875,ko:K21876
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000280,GO:0003006,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005637,GO:0005737,GO:0005783,GO:0005789,GO:0005819,GO:0005856,GO:0005874,GO:0005929,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007049,GO:0007059,GO:0007127,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008104,GO:0008150,GO:0008360,GO:0009524,GO:0009790,GO:0009792,GO:0009987,GO:0010256,GO:0010564,GO:0010824,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0019866,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030154,GO:0031090,GO:0031224,GO:0031514,GO:0031965,GO:0031967,GO:0031975,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032507,GO:0032878,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034397,GO:0034398,GO:0034504,GO:0034613,GO:0034992,GO:0034993,GO:0036126,GO:0042175,GO:0042802,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043495,GO:0043621,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044821,GO:0045132,GO:0045141,GO:0045143,GO:0045185,GO:0046605,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048609,GO:0048856,GO:0048869,GO:0050000,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051235,GO:0051259,GO:0051260,GO:0051276,GO:0051291,GO:0051303,GO:0051321,GO:0051493,GO:0051640,GO:0051641,GO:0051642,GO:0051649,GO:0051651,GO:0051656,GO:0051704,GO:0051726,GO:0061024,GO:0061842,GO:0061982,GO:0065003,GO:0065007,GO:0065008,GO:0070192,GO:0070197,GO:0070507,GO:0070727,GO:0071840,GO:0090220,GO:0090286,GO:0090435,GO:0097223,GO:0097224,GO:0097240,GO:0097729,GO:0098796,GO:0098813,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0106083,GO:0106094,GO:0120025,GO:0120038,GO:0140013,GO:1903046,GO:2000769
Exons5
Evalue2.74e-77
EggNOG OGsKOG2687@1|root,KOG2687@2759|Eukaryota
Ec32 ortholog descriptionSUN domain
Ec32 orthologEc-11_001360.1
Descriptioncytoskeletal anchoring at nuclear membrane
Cds size477
COG categoryS
BRITEko00000,ko03036,ko04090
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1236.12.1prot_P-littoralis_Contig1236.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1236 48718..51024 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789539.61334-UTR-P-littoralis_Contig1236:47657..487171680789539.61334-UTR-P-littoralis_Contig1236:47657..48717Pylaiella littoralis U1_48UTRP-littoralis_Contig1236 47658..48717 -
1680789539.6836317-UTR-P-littoralis_Contig1236:51024..510391680789539.6836317-UTR-P-littoralis_Contig1236:51024..51039Pylaiella littoralis U1_48UTRP-littoralis_Contig1236 51025..51039 -
1680789539.70008-UTR-P-littoralis_Contig1236:52008..521621680789539.70008-UTR-P-littoralis_Contig1236:52008..52162Pylaiella littoralis U1_48UTRP-littoralis_Contig1236 52009..52162 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789539.6301432-CDS-P-littoralis_Contig1236:48717..488351680789539.6301432-CDS-P-littoralis_Contig1236:48717..48835Pylaiella littoralis U1_48CDSP-littoralis_Contig1236 48718..48835 -
1680789539.6397347-CDS-P-littoralis_Contig1236:49423..495211680789539.6397347-CDS-P-littoralis_Contig1236:49423..49521Pylaiella littoralis U1_48CDSP-littoralis_Contig1236 49424..49521 -
1680789539.6488562-CDS-P-littoralis_Contig1236:50183..503671680789539.6488562-CDS-P-littoralis_Contig1236:50183..50367Pylaiella littoralis U1_48CDSP-littoralis_Contig1236 50184..50367 -
1680789539.669564-CDS-P-littoralis_Contig1236:50947..510241680789539.669564-CDS-P-littoralis_Contig1236:50947..51024Pylaiella littoralis U1_48CDSP-littoralis_Contig1236 50948..51024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1236.12.1

>prot_P-littoralis_Contig1236.12.1 ID=prot_P-littoralis_Contig1236.12.1|Name=mRNA_P-littoralis_Contig1236.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=159bp
MVSDTYTPASWWGSSWYWHRAGVENGIGPVESVISEDSSLGACWAMSGSE
GLVTVQLPREITVDAVSVEHSSRMVTAESASAPKDFEVWGMRSKDDSFRV
ELVSGTYDVDGRPIQTFPTTTRPPGVNFSIIQFKILSNWGKRDYTCLYRV
RVHGREGA*
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mRNA from alignment at P-littoralis_Contig1236:47658..52162-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1236.12.1 ID=mRNA_P-littoralis_Contig1236.12.1|Name=mRNA_P-littoralis_Contig1236.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4505bp|location=Sequence derived from alignment at P-littoralis_Contig1236:47658..52162- (Pylaiella littoralis U1_48)
AGGACGGAGTGGTGGCCGGGATCGCGGCGGGGGTGACGCGGGGTGCGTGC CGGAGGAGGTGGTGCGGGGGGAGGTGGACGTGGCGATCGGGAAGCTCAGA GCGGATGGGACGGGTCTGAGGGACTACGCTAACGCTGCTGTCGGCGGGAG AGTGGTGAGACCACGAAGGACTTTGACACGTTTGTTTTGTTTCGTTTGTT TTTTGGAACTGCTGTGAGTGAACAAAACAAAAATGAAAAATTGGTGGCAC TTTTGGAATGCAGGCAATGAGTGTGTCCGTGCTGTGATACAAGGCAAGCA TGATATGCGAGTACTGCAAGTCGAAGTGGACTGGGTGATGTTTCGCCGTG TATACGTACGTACGTGTTGGAAATGTTTGGCCGAGGTGGGAGCGAAAGAG TTTACGAGGTGTGCGGCGCAGGGGCGGTAACCTCGCGTCCTGCTGGTGGC GCTTGTTCCAAGCGTAGGCGTAAGAAATGGACAAGGGGGTATCTTGGATG CGTCATGCACGTGCCGCGGGTTTGCGAACGTTTCATCGTCTCCGGCAAGC CGGGGAGACGGGGCCCGCAGGGCGTTCGCTATTACTGTTCTCAGCGGTTG GAATGAAACCGATTTTTGTGTGTGTTGTTGTTGTCATTGATTCTTGCGTT CGTTCACCACCGCAGTCTAGCCCGTGGTCACAATGTACCAAACCACGCAC ATATCGTGCGAGGAGGAAAAAAAATAAAAATCAAAGGAAATAAACGATGG TCACCCAATCAAAATCAAAAAGGGTACTGTACCGTTGGGGTGCCATCTGT GGTGGCTAAAAGTACAAAAATACAGAAAAAAGTAGCAGGCCCGAAAAAAA CAACAAAAATTGGAAAGCAAGTGTGTGTGTGTCTGCCTGTGTGTCTGCCT GCTGCAAGAGTACAAGAAGACACCTCCTCCGTCGCCAGTACCCCCACGTT CACCGGTGTGGCTTCTACATATCATACCTCGACACACGCGGCACTTGCTC ATCCGAGAGGTCTGAAAGAAATGTATTTCTGAACGCGATTGTTCCCACCC GCTTTCTCCGGGCGCGGGCGCTTGTAATCGACCACATCACGCCTATCCCT CGGCGATGGGTGATGGGATGCAGCTGGCGTCAAGAGATATGGTGTCCGAC ACCTACACCCCCGCGTCTTGGTGGGGCTCCAGCTGGTACTGGCACAGAGC TGGCGTGGAGAACGGGTGAGCAAGCACAGCAGCAGGGTGCCGCGCACGTA GCAAGTGTCTAAGCGGAGGATCTCAGTAATGCAGGCAGGAGCCATCGTGC AGAAGGCTGCTGATTGTTTTGCCCGCCTTTTTTTTTTTGTTATTTTCGAC AGTCGCTGTGGTTTGGGGTCTCGCCTCCGGCCCTGTTTCTCGTTTTGTAG GACAGCACCCGCTCATGTTCTTGGAACCCAGGGGAGCCGTGCCCTTGCTT TAGGTGGGGTGCGACGTGGATAAGTTCGTCTCGAACCGGCTCCCTCTGCA GAGGGCCCCCTCTATGATAGCTGTTTTCGATGTCATGAGGCCCCCTGTTG TCCAAACCTTTCGTGTTTTCTGTGCGTTTATTTCACCGTGTCATCTGCCG TGGAAAATACTCGGTGGTAAAAGACCACGTAACCCGAATCGCAGCATCAA AGCCCCTAGCTTCCCCTGCCCTGCCCTGCCTTTCTCGCCTCCTCCGGATG GAAACCCACCGTTGGTCCCACTTGCGCCGGGTAAACATGCCTCTTTTCGT GCTATCAACCCCCAAACATGCTCGACCCGACGTGGCATTTTACAGCATTG GCCCCGTTGAGTCGGTGATTTCGGAAGACAGCAGCCTCGGCGCTTGCTGG GCGATGTCCGGCAGCGAGGGGCTCGTGACCGTTCAGCTGCCCAGAGAAAT CACGGTGGATGCCGTTTCTGTAGAGCACTCTTCGAGGATGGTCACCGCCG AGAGCGCCTCGGCTCCAAAGGATTTCGAGGTGAGGGTGTTCCGCCGCCTG TTTTGCTGGGCCGCTCGAATGCATCTTTCCGCCCGACTCTTTCGTCCGTC GTTCTTGGAAATTACCAGACTGTCTGTTCTGGTTGTCCGGTGCTCGCTTT CTTTGGTCGTTTTTCGGCCGTGCGTTGTCTGTACGTGCGTGCGCCCCAAT CAATGCTCGACAGACCGCTGTTGCGGGAGGTCCCGCCCGCTCTGGTGCGT TCTTGCGCGCATGCGATGGATGGTCCGTGTTATGCTGTACTGCTTCTGTA TGATACAGTATGTTTTTGTCATTTCCTTTCAATTACCGGTACCTCTAATC ATGTCAAGAGTAGGGCCTCGCCCGCCCGCCTGATTTCGGCTTTTCCGTAC GTTTGATGATATCGAAAGGGTAAGTCCCCTTCTGCTCCTTGGGTGAGCGG TATTGTATGACAGGAGGCCTGATCTGGAGACACTTTCTGGGATTTTTCTT GAGATTGATCATGTATCATGGGGGCTCGTGCTTCGTCCTCGGGGTGTGAA GCGTGGCATCGTATCTCTTCATGAGCGATGGTGTCATGAGCGAGATCATT CGGACTCGTGTACTTTCGTGCGTGCACCCTTCCGGTGGTGTAACGGCGTC TTATAGCCGTCGTAAATCGCTTTCTATGCCTGTGCGTACAGGTGTGGGGA ATGAGGAGCAAGGACGACAGCTTTCGGGTCGAACTGGTGAGCGGGACGTA CGACGTCGACGGGAGGCCCATCCAGACATTCCCCACAACGTGAGCACTTT GTACGGGGCGTAGCACCGGTACCATATCATAGCGTTGTTTTTGCGTACAG TTACCCCGCCGCGTGATCTTCTTCGCTATGATTGCACGAGGTGTGCCACC CACGAAGCAAAGAAGGATACACTTCAGAGTTCATGGAGATGCATATTCCG GTACGTATATGCAATTTTTGGGCGGCCGGCTGCAGCAGTGGCTGTCGAAC AACATAATGAAGGGGCGTTCGTTCTAGGAAGCCAAGGGCGTAGGGTGCGG GCTTTGTTTTCTCTGTACCCGCGGATGTGGTACGTAGGGCACCCTGTAAT ATGGTACACACGTATGTGCGTCCACATCATCCCCCATCCCCTCCTCCCAG CACCTTGCCGTTTTTCATAAGCAAGAATCTATGAATCCATCATCCGAAGG TCCAACGATGTGTTGCGCGTGTGTGTGAATTCGTCCCATTTATTATGAGG TGAAGTGGGTGCATCAGTCGGGGTCACACAGAGGGAAGGTCACATACGAT ATATATATATATATATATTTTTTTTTTAGGTGCTTTGCATTGCATTCCGC GCTGTTTTTCGTTTGTGTTCTCCGCAGAACCAGGCCGCCGGGCGTGAACT TCTCGATCATTCAGTTCAAGATTCTCAGCAACTGGGGAAAGCGTGATTAC ACCTGCCTGTACCGCGTGCGTGTGCATGGGAGAGAAGGCGCCTGAAAGAC CAATACAACGTTAATTTAAGGAGAGGCCCCGGGGCGGGAGCAAATTCCTG CCAGCTGGTGGACGCTCGGCCGGGCGGGGCGCTAAACGGTTCCTAAGAAA GCAGCAAGTTGGCCAACGCACATGGGATTTGGTGATTGATTTTGATTGGT GGTTCAAGTAGGGGTGCGATCGCACGCTGGTGCGCAGCAGCGCAGGAAAC CGCGTACAGCAGTAGTAGTGACACCGTCCGCCGTGCCAACCCCAACCCAA GTGCTTGATGAGCATGGTATTCGGCTGTGAAGGTGGTTCGTCGTAGCCTG GCCTTCCTGTTTTTTTTATAGCGGCGAAGAAACACGAGCTGTGCGGTACG GTCACGCGTCGGGGGTCGGTCGTGTTGGAGTTGGCCGTCGCCGCGCTTGC ACAGCATGATGCGATCATCGTCATCATCACACGCATGCACGCGGAGGTGC AAGGTACTCGGGGGTTCTCCTGCACACCGCCTCTGGCTATTTTTGGATGT TGTTGGCATTTTCTGTACGTGTTTGTACGAGTATGATAGTTGTGAAACAC TTTGGTGTCTGGTTCCCTTGAAGCAAAATAAAATGGTACGAGCGAGTACT ATTCTTCGTTTTTTTCTCGTTTTTTTCTCGCTGTTTTTACGTGTGCCGAC CGGGAGTGTGGCTCGGAGGCACATGTGGCGGAGGAGACGAGGAGGCAGCC ACTGGACTCGATCTCGCGGGCTTGCCTGCTTCGCACATTGACTCGAGTGA CCTTGCTGACACATTATTGCTGCATGAAAAAGAGATCGCTTGCCCAGTGC GTGCTCCCTCTTTGTTGTTCAAAACCACGAGACTTCGAAAGCACCGTTTC GTGTGTGCACGCGTGTATGATGCCATACTGCTTCGTTTTGTCGGTGAGAT GGTTTTCTGGCTCATAGCCTTTTCGAGACGCCCTGGCCGGGCGTAGAGAT GCACATACACACATCCAAGCTCTCGTGAAAGAAGCGGCCGCGTGCTGGTA GCGGCGTTGCCTGCACATACACGCGAGGACGCCGTGCCACAGCCAGCCGC AGCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1236:47658..52162-

>mRNA_P-littoralis_Contig1236.12.1 ID=mRNA_P-littoralis_Contig1236.12.1|Name=mRNA_P-littoralis_Contig1236.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig1236:47658..52162- (Pylaiella littoralis U1_48)
ATGGTGTCCGACACCTACACCCCCGCGTCTTGGTGGGGCTCCAGCTGGTA
CTGGCACAGAGCTGGCGTGGAGAACGGCATTGGCCCCGTTGAGTCGGTGA
TTTCGGAAGACAGCAGCCTCGGCGCTTGCTGGGCGATGTCCGGCAGCGAG
GGGCTCGTGACCGTTCAGCTGCCCAGAGAAATCACGGTGGATGCCGTTTC
TGTAGAGCACTCTTCGAGGATGGTCACCGCCGAGAGCGCCTCGGCTCCAA
AGGATTTCGAGGTGTGGGGAATGAGGAGCAAGGACGACAGCTTTCGGGTC
GAACTGGTGAGCGGGACGTACGACGTCGACGGGAGGCCCATCCAGACATT
CCCCACAACAACCAGGCCGCCGGGCGTGAACTTCTCGATCATTCAGTTCA
AGATTCTCAGCAACTGGGGAAAGCGTGATTACACCTGCCTGTACCGCGTG
CGTGTGCATGGGAGAGAAGGCGCCTGA
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