mRNA_P-littoralis_Contig994.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig994.13.1
Unique NamemRNA_P-littoralis_Contig994.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: D8LPG5_ECTSI (EsV-1-139 n=2 Tax=root TaxID=1 RepID=D8LPG5_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 7.370e-60
Identity = 95/136 (69.85%), Postives = 113/136 (83.09%), Query Frame = 3
Query:  339 FFDQYSEYAGRRHDTSLLSSSQPFFQRTQGANGAFIGSPEAVRHQH---PCRRNCKRCLLAGSTVYFDRLFLLKYFPCLKTFFHHRVVDVSTPPEMVRRWRPDLARRMPRQNGAHRAYDGILDSISLIKLFKTTLL 737
            FFD YS+  G R+DT+ ++SSQPFF RT GANG F+G+ +A R +H   P R N K+CLLAGSTVYFDR+FLLKYFPCLKTFFH+RVVDVSTP EMVRRWRPD+A ++PR+NG+HRAYD ILDSISL+K FK T L
Sbjct:  132 FFDHYSKDVGGRYDTTQITSSQPFFDRTLGANGTFLGASDASRCRHQQQPRRSNYKKCLLAGSTVYFDRIFLLKYFPCLKTFFHYRVVDVSTPLEMVRRWRPDVAAKLPRRNGSHRAYDDILDSISLMKFFKETFL 267          
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: B5LWG6_9PHYC (Putative oligoribonuclease n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG6_9PHYC)

HSP 1 Score: 115 bits (287), Expect = 1.650e-27
Identity = 54/97 (55.67%), Postives = 70/97 (72.16%), Query Frame = 1
Query:   52 GYDKDFPWFWIGLETTGLDTDTNLILEIVIVVTDRDLNEIDSMRLVLHHPHPILMARSSAWCRKTFCHRSEGGNGLFDNCHFSAFSHHEAEYRE*NF 342
            GYD++ PWFWI +ET+ LD  T+ +LEI IVVTD  LN  DS+ +V+HHP  ILM +SS WC++ FC RS GGNGLFD+CH+S  S  +A +   NF
Sbjct:   16 GYDRNNPWFWIDIETSSLDFSTSDVLEIAIVVTDSGLNVWDSLHVVIHHPINILMLKSSNWCKEKFCSRSYGGNGLFDDCHYSNTSITDATHLMLNF 112          
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: Q6XM84_9PHYC (FirrV-1-A3 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM84_9PHYC)

HSP 1 Score: 103 bits (256), Expect = 4.430e-23
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   55 YDKDFPWFWIGLETTGLDTDTNLILEIVIVVTDRDLNEIDSMRLVLHHPHPILMARSSAWCRKTFCHRSEGGNGLFDNCHFSAFSHHEAEYR 330
            Y++  PWFWI +ET+ LD   + +LE+ +VVTD  LN  DS+ LV+HHP  ILM +SS WC++ FC    GGNGLFD CH+S  S  +A ++
Sbjct:    6 YERYNPWFWIDMETSSLDFSQSEVLEVALVVTDHHLNVWDSLHLVIHHPINILMLKSSNWCKQRFCSLKYGGNGLFDECHYSETSIADATHK 97          
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: B4NG42_DROWI (Exonuclease domain-containing protein n=3 Tax=Drosophila willistoni TaxID=7260 RepID=B4NG42_DROWI)

HSP 1 Score: 89.7 bits (221), Expect = 3.960e-18
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 3
Query:  495 KRCLLAGSTVYFDRLFLLKYFPCLKTFFHHRVVDVSTPPEMVRRWRPDLARRMPRQNGAHRAYDGILDSISLIKLFK 725
            K C+LAG++VY DRLFL KY P +  + H+R+VDVST  E+ RRW PD+  + P++  AHR+ D I DSI+ +K +K
Sbjct:  142 KTCVLAGNSVYMDRLFLYKYMPIVNKYLHYRIVDVSTIKELARRWNPDIIEKAPKKAFAHRSLDDIKDSIAELKFYK 218          
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: UPI0008F9D2F1 (oligoribonuclease, mitochondrial isoform X4 n=4 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9D2F1)

HSP 1 Score: 79.0 bits (193), Expect = 2.380e-14
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 3
Query:  501 CLLAGSTVYFDRLFLLKYFPCLKTFFHHRVVDVSTPPEMVRRWRPDLARRMPRQNGAHRAYDGILDSISLIKLFK 725
            C LAG++V FDR+F++KYFP   +  H+R +DVST  E++RRW P  +   P++   HRA D IL+SI  ++ +K
Sbjct:  106 CPLAGNSVGFDRMFIMKYFPKFSSHLHYRTIDVSTVKELIRRWNPVCSANTPQKKLTHRALDDILESIDELRFYK 180          
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: UPI001C9AE2A3 (probable oligoribonuclease n=1 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9AE2A3)

HSP 1 Score: 75.9 bits (185), Expect = 2.610e-13
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  501 CLLAGSTVYFDRLFLLKYFPCLKTFFHHRVVDVSTPPEMVRRWRPDLARRMPRQNGAHRAYDGILDSISLIKLFK 725
            C +AG+T+Y+DRL+L+KY P +  + HHR++DVST  ++VR W P      P++   HRA   I +SI  +K +K
Sbjct:  102 CPMAGNTIYWDRLYLMKYMPLVHKYLHHRIIDVSTIKQLVRMWNPKEFENAPKKVFCHRALSDIKESIQELKYYK 176          
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: A0A0M3IY33_ANISI (Probable oligoribonuclease (inferred by orthology to a C. elegans protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3IY33_ANISI)

HSP 1 Score: 75.9 bits (185), Expect = 4.810e-13
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 3
Query:  504 LLAGSTVYFDRLFLLKYFPCLKTFFHHRVVDVSTPPEMVRRWRPDLARRMPRQNGAHRAYDGILDSISLIKLFKTTL 734
            +LAG++VY DR+F+ KY P L    H+R VDVST  E+V+RW P     +PR+  AHRA D I +SI  +K +K  +
Sbjct:  130 VLAGNSVYMDRIFINKYMPNLGAHLHYRTVDVSTVKELVKRWNPLAYTLIPRKKNAHRALDDIKESIEELKWYKANI 206          
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: A0A6J1T691_FRAOC (probable oligoribonuclease n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1T691_FRAOC)

HSP 1 Score: 72.8 bits (177), Expect = 7.080e-12
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 3
Query:  504 LLAGSTVYFDRLFLLKYFPCLKTFFHHRVVDVSTPPEMVRRWRPDLARRMPRQNGAHRAYDGILDSISLIKLFKTTL 734
            +LAG++VY DR+FL+KY P +    H+R+VDVS+  E+ RRW P      P++  AHRA + I +SI  +K +K  L
Sbjct:  139 VLAGNSVYMDRMFLMKYMPRVNEHMHYRIVDVSSVKELCRRWAPKTYDATPKKKLAHRALEDIKESIQELKYYKNHL 215          
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: A0A3C1TRL3_9GAMM (Oligoribonuclease n=3 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3C1TRL3_9GAMM)

HSP 1 Score: 70.9 bits (172), Expect = 1.500e-11
Identity = 29/73 (39.73%), Postives = 53/73 (72.60%), Query Frame = 3
Query:  507 LAGSTVYFDRLFLLKYFPCLKTFFHHRVVDVSTPPEMVRRWRPDLARRMPRQNGAHRAYDGILDSISLIKLFK 725
            L G++++ DR FL+ + P L++FFH+R++DVS+  E+ RRW P +  ++ +Q G+HRA D I +SI  +++++
Sbjct:   90 LCGNSIWQDRRFLIHHMPALESFFHYRIIDVSSVKELARRWNPSIINQVSKQ-GSHRALDDIRESIEELRVYR 161          
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: A0A224XNQ7_9HEMI (Putative deddh 3'-5' exonuclease domain of oligoribonuclease n=3 Tax=Triatominae TaxID=70999 RepID=A0A224XNQ7_9HEMI)

HSP 1 Score: 71.6 bits (174), Expect = 1.900e-11
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 3
Query:  498 RCLLAGSTVYFDRLFLLKYFPCLKTFFHHRVVDVSTPPEMVRRWRPDLARRMPRQNGAHRAYDGILDSISLIKLFKTTL 734
            RC L GS+VY D+LFLLKY P    + H+R++DVST  E+ RRW    +   P++   HRA + I +SI+ +K +K  L
Sbjct:  139 RCPLGGSSVYMDKLFLLKYMPTFANYMHYRIIDVSTVKELARRW---YSIEGPKKLMKHRALEDIKESINELKFYKRCL 214          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPG5_ECTSI7.370e-6069.85EsV-1-139 n=2 Tax=root TaxID=1 RepID=D8LPG5_ECTSI[more]
B5LWG6_9PHYC1.650e-2755.67Putative oligoribonuclease n=1 Tax=Feldmannia spec... [more]
Q6XM84_9PHYC4.430e-2350.00FirrV-1-A3 n=1 Tax=Feldmannia irregularis virus a ... [more]
B4NG42_DROWI3.960e-1850.65Exonuclease domain-containing protein n=3 Tax=Dros... [more]
UPI0008F9D2F12.380e-1445.33oligoribonuclease, mitochondrial isoform X4 n=4 Ta... [more]
UPI001C9AE2A32.610e-1342.67probable oligoribonuclease n=1 Tax=Colletes gigas ... [more]
A0A0M3IY33_ANISI4.810e-1346.75Probable oligoribonuclease (inferred by orthology ... [more]
A0A6J1T691_FRAOC7.080e-1244.16probable oligoribonuclease n=1 Tax=Frankliniella o... [more]
A0A3C1TRL3_9GAMM1.500e-1139.73Oligoribonuclease n=3 Tax=Gammaproteobacteria bact... [more]
A0A224XNQ7_9HEMI1.900e-1144.30Putative deddh 3'-5' exonuclease domain of oligori... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig994contigP-littoralis_Contig994:68293..69029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog654926.Q8QNE0_ESV1K
Model size737
Max annot lvl10239|Viruses
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.36e-25
EggNOG OGs4QARC@10239|Viruses
Cds size159
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791918.9424093-UTR-P-littoralis_Contig994:68292..686931680791918.9424093-UTR-P-littoralis_Contig994:68292..68693Pylaiella littoralis U1_48UTRP-littoralis_Contig994 68293..68693 -
1680791918.9760807-UTR-P-littoralis_Contig994:68852..690291680791918.9760807-UTR-P-littoralis_Contig994:68852..69029Pylaiella littoralis U1_48UTRP-littoralis_Contig994 68853..69029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791918.9607086-CDS-P-littoralis_Contig994:68693..688521680791918.9607086-CDS-P-littoralis_Contig994:68693..68852Pylaiella littoralis U1_48CDSP-littoralis_Contig994 68694..68852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig994.13.1prot_P-littoralis_Contig994.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig994 68694..68852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig994.13.1

>prot_P-littoralis_Contig994.13.1 ID=prot_P-littoralis_Contig994.13.1|Name=mRNA_P-littoralis_Contig994.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
MRLVLHHPHPILMARSSAWCRKTFCHRSEGGNGLFDNCHFSAFSHHEAEY
RE*
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mRNA from alignment at P-littoralis_Contig994:68293..69029-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig994.13.1 ID=mRNA_P-littoralis_Contig994.13.1|Name=mRNA_P-littoralis_Contig994.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=737bp|location=Sequence derived from alignment at P-littoralis_Contig994:68293..69029- (Pylaiella littoralis U1_48)
GGCCGGAGAGGCACCTTGTGGGTTTCCCCGAGCCCCCGGCCGAATCAGAT CGGTTACGACAAGGACTTCCCGTGGTTCTGGATCGGTCTCGAAACAACAG GCCTGGACACAGACACGAACTTGATCCTTGAGATAGTTATTGTCGTTACC GATCGAGACCTGAACGAGATTGATTCCATGCGGCTGGTTCTGCACCACCC GCACCCCATCCTCATGGCTCGTTCCAGCGCCTGGTGCAGGAAAACGTTCT GCCATCGCAGCGAGGGGGGCAACGGTCTCTTCGACAATTGTCACTTCAGC GCCTTCAGTCACCACGAGGCCGAGTACAGGGAATAGAATTTTTCGATCAG TATTCCGAATACGCGGGCAGGAGGCACGACACGTCACTCCTGTCGTCGAG CCAGCCCTTCTTCCAGAGAACGCAGGGTGCAAACGGTGCTTTCATCGGTT CTCCGGAAGCCGTGCGCCACCAGCACCCTTGTCGCCGCAACTGCAAGAGG TGCCTGTTGGCGGGCTCGACGGTTTACTTCGACCGCCTGTTCCTGCTGAA GTACTTCCCTTGTCTCAAGACGTTCTTCCACCACCGGGTCGTCGACGTCT CCACGCCGCCCGAGATGGTGCGTCGCTGGAGGCCCGACCTTGCGAGGAGG ATGCCGCGCCAGAACGGAGCGCATCGAGCCTACGACGGTATCCTCGACTC CATATCCCTGATAAAATTATTCAAGACCACACTCTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig994:68293..69029-

>mRNA_P-littoralis_Contig994.13.1 ID=mRNA_P-littoralis_Contig994.13.1|Name=mRNA_P-littoralis_Contig994.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig994:68293..69029- (Pylaiella littoralis U1_48)
ATGCGGCTGGTTCTGCACCACCCGCACCCCATCCTCATGGCTCGTTCCAG
CGCCTGGTGCAGGAAAACGTTCTGCCATCGCAGCGAGGGGGGCAACGGTC
TCTTCGACAATTGTCACTTCAGCGCCTTCAGTCACCACGAGGCCGAGTAC
AGGGAATAG
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