mRNA_P-littoralis_Contig994.13.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: D8LPG5_ECTSI (EsV-1-139 n=2 Tax=root TaxID=1 RepID=D8LPG5_ECTSI) HSP 1 Score: 199 bits (505), Expect = 7.370e-60 Identity = 95/136 (69.85%), Postives = 113/136 (83.09%), Query Frame = 3
Query: 339 FFDQYSEYAGRRHDTSLLSSSQPFFQRTQGANGAFIGSPEAVRHQH---PCRRNCKRCLLAGSTVYFDRLFLLKYFPCLKTFFHHRVVDVSTPPEMVRRWRPDLARRMPRQNGAHRAYDGILDSISLIKLFKTTLL 737
FFD YS+ G R+DT+ ++SSQPFF RT GANG F+G+ +A R +H P R N K+CLLAGSTVYFDR+FLLKYFPCLKTFFH+RVVDVSTP EMVRRWRPD+A ++PR+NG+HRAYD ILDSISL+K FK T L
Sbjct: 132 FFDHYSKDVGGRYDTTQITSSQPFFDRTLGANGTFLGASDASRCRHQQQPRRSNYKKCLLAGSTVYFDRIFLLKYFPCLKTFFHYRVVDVSTPLEMVRRWRPDVAAKLPRRNGSHRAYDDILDSISLMKFFKETFL 267
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: B5LWG6_9PHYC (Putative oligoribonuclease n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG6_9PHYC) HSP 1 Score: 115 bits (287), Expect = 1.650e-27 Identity = 54/97 (55.67%), Postives = 70/97 (72.16%), Query Frame = 1
Query: 52 GYDKDFPWFWIGLETTGLDTDTNLILEIVIVVTDRDLNEIDSMRLVLHHPHPILMARSSAWCRKTFCHRSEGGNGLFDNCHFSAFSHHEAEYRE*NF 342
GYD++ PWFWI +ET+ LD T+ +LEI IVVTD LN DS+ +V+HHP ILM +SS WC++ FC RS GGNGLFD+CH+S S +A + NF
Sbjct: 16 GYDRNNPWFWIDIETSSLDFSTSDVLEIAIVVTDSGLNVWDSLHVVIHHPINILMLKSSNWCKEKFCSRSYGGNGLFDDCHYSNTSITDATHLMLNF 112
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: Q6XM84_9PHYC (FirrV-1-A3 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM84_9PHYC) HSP 1 Score: 103 bits (256), Expect = 4.430e-23 Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 55 YDKDFPWFWIGLETTGLDTDTNLILEIVIVVTDRDLNEIDSMRLVLHHPHPILMARSSAWCRKTFCHRSEGGNGLFDNCHFSAFSHHEAEYR 330
Y++ PWFWI +ET+ LD + +LE+ +VVTD LN DS+ LV+HHP ILM +SS WC++ FC GGNGLFD CH+S S +A ++
Sbjct: 6 YERYNPWFWIDMETSSLDFSQSEVLEVALVVTDHHLNVWDSLHLVIHHPINILMLKSSNWCKQRFCSLKYGGNGLFDECHYSETSIADATHK 97
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: B4NG42_DROWI (Exonuclease domain-containing protein n=3 Tax=Drosophila willistoni TaxID=7260 RepID=B4NG42_DROWI) HSP 1 Score: 89.7 bits (221), Expect = 3.960e-18 Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 3
Query: 495 KRCLLAGSTVYFDRLFLLKYFPCLKTFFHHRVVDVSTPPEMVRRWRPDLARRMPRQNGAHRAYDGILDSISLIKLFK 725
K C+LAG++VY DRLFL KY P + + H+R+VDVST E+ RRW PD+ + P++ AHR+ D I DSI+ +K +K
Sbjct: 142 KTCVLAGNSVYMDRLFLYKYMPIVNKYLHYRIVDVSTIKELARRWNPDIIEKAPKKAFAHRSLDDIKDSIAELKFYK 218
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: UPI0008F9D2F1 (oligoribonuclease, mitochondrial isoform X4 n=4 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9D2F1) HSP 1 Score: 79.0 bits (193), Expect = 2.380e-14 Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 3
Query: 501 CLLAGSTVYFDRLFLLKYFPCLKTFFHHRVVDVSTPPEMVRRWRPDLARRMPRQNGAHRAYDGILDSISLIKLFK 725
C LAG++V FDR+F++KYFP + H+R +DVST E++RRW P + P++ HRA D IL+SI ++ +K
Sbjct: 106 CPLAGNSVGFDRMFIMKYFPKFSSHLHYRTIDVSTVKELIRRWNPVCSANTPQKKLTHRALDDILESIDELRFYK 180
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: UPI001C9AE2A3 (probable oligoribonuclease n=1 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9AE2A3) HSP 1 Score: 75.9 bits (185), Expect = 2.610e-13 Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 3
Query: 501 CLLAGSTVYFDRLFLLKYFPCLKTFFHHRVVDVSTPPEMVRRWRPDLARRMPRQNGAHRAYDGILDSISLIKLFK 725
C +AG+T+Y+DRL+L+KY P + + HHR++DVST ++VR W P P++ HRA I +SI +K +K
Sbjct: 102 CPMAGNTIYWDRLYLMKYMPLVHKYLHHRIIDVSTIKQLVRMWNPKEFENAPKKVFCHRALSDIKESIQELKYYK 176
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: A0A0M3IY33_ANISI (Probable oligoribonuclease (inferred by orthology to a C. elegans protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3IY33_ANISI) HSP 1 Score: 75.9 bits (185), Expect = 4.810e-13 Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 3
Query: 504 LLAGSTVYFDRLFLLKYFPCLKTFFHHRVVDVSTPPEMVRRWRPDLARRMPRQNGAHRAYDGILDSISLIKLFKTTL 734
+LAG++VY DR+F+ KY P L H+R VDVST E+V+RW P +PR+ AHRA D I +SI +K +K +
Sbjct: 130 VLAGNSVYMDRIFINKYMPNLGAHLHYRTVDVSTVKELVKRWNPLAYTLIPRKKNAHRALDDIKESIEELKWYKANI 206
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: A0A6J1T691_FRAOC (probable oligoribonuclease n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1T691_FRAOC) HSP 1 Score: 72.8 bits (177), Expect = 7.080e-12 Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 3
Query: 504 LLAGSTVYFDRLFLLKYFPCLKTFFHHRVVDVSTPPEMVRRWRPDLARRMPRQNGAHRAYDGILDSISLIKLFKTTL 734
+LAG++VY DR+FL+KY P + H+R+VDVS+ E+ RRW P P++ AHRA + I +SI +K +K L
Sbjct: 139 VLAGNSVYMDRMFLMKYMPRVNEHMHYRIVDVSSVKELCRRWAPKTYDATPKKKLAHRALEDIKESIQELKYYKNHL 215
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: A0A3C1TRL3_9GAMM (Oligoribonuclease n=3 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3C1TRL3_9GAMM) HSP 1 Score: 70.9 bits (172), Expect = 1.500e-11 Identity = 29/73 (39.73%), Postives = 53/73 (72.60%), Query Frame = 3
Query: 507 LAGSTVYFDRLFLLKYFPCLKTFFHHRVVDVSTPPEMVRRWRPDLARRMPRQNGAHRAYDGILDSISLIKLFK 725
L G++++ DR FL+ + P L++FFH+R++DVS+ E+ RRW P + ++ +Q G+HRA D I +SI +++++
Sbjct: 90 LCGNSIWQDRRFLIHHMPALESFFHYRIIDVSSVKELARRWNPSIINQVSKQ-GSHRALDDIRESIEELRVYR 161
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Match: A0A224XNQ7_9HEMI (Putative deddh 3'-5' exonuclease domain of oligoribonuclease n=3 Tax=Triatominae TaxID=70999 RepID=A0A224XNQ7_9HEMI) HSP 1 Score: 71.6 bits (174), Expect = 1.900e-11 Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 3
Query: 498 RCLLAGSTVYFDRLFLLKYFPCLKTFFHHRVVDVSTPPEMVRRWRPDLARRMPRQNGAHRAYDGILDSISLIKLFKTTL 734
RC L GS+VY D+LFLLKY P + H+R++DVST E+ RRW + P++ HRA + I +SI+ +K +K L
Sbjct: 139 RCPLGGSSVYMDKLFLLKYMPTFANYMHYRIIDVSTVKELARRW---YSIEGPKKLMKHRALEDIKESINELKFYKRCL 214 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig994.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig994.13.1 >prot_P-littoralis_Contig994.13.1 ID=prot_P-littoralis_Contig994.13.1|Name=mRNA_P-littoralis_Contig994.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp MRLVLHHPHPILMARSSAWCRKTFCHRSEGGNGLFDNCHFSAFSHHEAEYback to top mRNA from alignment at P-littoralis_Contig994:68293..69029- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig994.13.1 ID=mRNA_P-littoralis_Contig994.13.1|Name=mRNA_P-littoralis_Contig994.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=737bp|location=Sequence derived from alignment at P-littoralis_Contig994:68293..69029- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig994:68293..69029- >mRNA_P-littoralis_Contig994.13.1 ID=mRNA_P-littoralis_Contig994.13.1|Name=mRNA_P-littoralis_Contig994.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig994:68293..69029- (Pylaiella littoralis U1_48)back to top |