mRNA_P-littoralis_Contig10.197.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig10.197.1
Unique NamemRNA_P-littoralis_Contig10.197.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig10.197.1 vs. uniprot
Match: D7FQF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF6_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 4.260e-41
Identity = 95/182 (52.20%), Postives = 114/182 (62.64%), Query Frame = 3 
Query:  261 GAGGGKLQETALSFTGVVTIITFCCCSTMSCVALCIKCVSWMVGHRGRRRRIFLLPEQGWRPDLGQNDDEEDGEELCPCRTPRTVIVLNTIPAEQRNGRVLQTSEIELREVPFGNIEEQXXXXXXXPSGNGDAAVVGEKGFNMMSGKQGQAGGLRLQRER---TGGSTMTRTGTPSMNGELE 797
            G GGG L+ETALSFTG+V+IITFCCCSTMSCVALCIK  SWM GHRGRR+R+ LLP +       QND E + +   P + P  VI+L+T PAEQR+G  L+ SEIELR+VPFGN+E Q        + +      G +       KQ    G   + ER   TG S MTR GTPS NGE E
Sbjct:    7 GGGGGGLRETALSFTGIVSIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQ------QNDGEAEEQLYYPHQQP--VIILDTNPAEQRSGCTLRASEIELRQVPFGNLEAQRETKNSDVNDDDVGFRTGAQADPNKIQKQQHLKGSASRMERDTTTGTSIMTRAGTPSTNGEQE 180
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BLAST of mRNA_P-littoralis_Contig10.197.1 vs. uniprot
Match: A0A6H5JCN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCN9_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 2.080e-40
Identity = 98/185 (52.97%), Postives = 115/185 (62.16%), Query Frame = 3 
Query:  261 GAGGGKLQETALSFTGVVTIITFCCCSTMSCVALCIKCVSWMVGHRGRRRRIFLLPEQGWRPDLGQNDDEEDGEELCPCRTPRTVIVLNTIPAEQRNGRVLQTSEIELREVPFGNIEEQXXXXXXXPSGNGDAAVV---GEKGFNMMSGKQGQAGGLRLQRER---TGGSTMTRTGTPSMNGELE 797
            G GGG L+ETALSFTG+++IITFCCCSTMSCVALCIK  SWM GHRGRR+R+ LLP +       QND E + +   P   P  VI+L+T  AE+R+G  L  SEIELR+VPFGN+E Q        S +GD  VV   G +       KQ    G   Q ER   TG S MTR GTPS NGE E
Sbjct:    7 GGGGGGLRETALSFTGIISIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQ------QNDGEAEEQLYSPHHQP--VIILDTNSAEKRSGYTLHASEIELRQVPFGNLEAQRETKN---SDDGDDDVVFLTGAQADPNKIRKQQHLKGSASQMERDTTTGTSIMTRAGTPSTNGEQE 180
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQF6_ECTSI4.260e-4152.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCN9_9PHAE2.080e-4052.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig10contigP-littoralis_Contig10:694939..697636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2698
Hectar predicted targeting categorysignal anchor
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_006310.1
Cds size654
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789334.1485574-UTR-P-littoralis_Contig10:694938..6951801680789334.1485574-UTR-P-littoralis_Contig10:694938..695180Pylaiella littoralis U1_48UTRP-littoralis_Contig10 694939..695180 +
1680789334.178776-UTR-P-littoralis_Contig10:695834..6976361680789334.178776-UTR-P-littoralis_Contig10:695834..697636Pylaiella littoralis U1_48UTRP-littoralis_Contig10 695835..697636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789334.1675901-CDS-P-littoralis_Contig10:695180..6958341680789334.1675901-CDS-P-littoralis_Contig10:695180..695834Pylaiella littoralis U1_48CDSP-littoralis_Contig10 695181..695834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig10.197.1prot_P-littoralis_Contig10.197.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig10 695181..695834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig10.197.1

>prot_P-littoralis_Contig10.197.1 ID=prot_P-littoralis_Contig10.197.1|Name=mRNA_P-littoralis_Contig10.197.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=218bp
MWTQQNGAGGGKLQETALSFTGVVTIITFCCCSTMSCVALCIKCVSWMVG
HRGRRRRIFLLPEQGWRPDLGQNDDEEDGEELCPCRTPRTVIVLNTIPAE
QRNGRVLQTSEIELREVPFGNIEEQQQQQRRRPSGNGDAAVVGEKGFNMM
SGKQGQAGGLRLQRERTGGSTMTRTGTPSMNGELEQTPSSSSCEGNNQGE
GEDSADENRDAELRRPP*
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mRNA from alignment at P-littoralis_Contig10:694939..697636+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.197.1 ID=mRNA_P-littoralis_Contig10.197.1|Name=mRNA_P-littoralis_Contig10.197.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2698bp|location=Sequence derived from alignment at P-littoralis_Contig10:694939..697636+ (Pylaiella littoralis U1_48)
CTTTGGGATAGCCCCCCACTGATACTGCTGTGTGGCGTGTTCATTCCGTC
GTATTGATAATTCTTCTTCATTCGAGGAGGGCGTTCCGTCCGTCATCTCG
CTGCATATAGCGATGGTTCTTCTCTGCATGGTCTTATGATACGTACGAGA
TACCAAAATCCCTGTAACCGACAACCTCAAAACAGCAGTAGTTTCGACAG
GGTTTCGAACTGAATCTTTTCCTCCTCAAACATCATGACCCTATGTGGAC
ACAGCAAAACGGAGCTGGTGGCGGCAAGCTCCAAGAGACGGCGCTGTCCT
TTACAGGAGTCGTCACCATAATCACCTTCTGCTGCTGCTCGACCATGTCG
TGCGTGGCTCTGTGCATCAAGTGCGTCAGCTGGATGGTCGGACATCGCGG
CAGGCGACGGAGGATCTTTCTCCTACCCGAACAAGGGTGGCGGCCGGACC
TCGGGCAAAACGACGACGAGGAGGACGGAGAAGAGCTCTGCCCGTGCCGA
ACACCGCGGACGGTCATCGTTTTGAATACCATCCCCGCAGAGCAGCGGAA
TGGCCGTGTCCTGCAAACCTCGGAGATCGAGCTTCGAGAGGTGCCGTTCG
GTAACATAGAGGAGCAGCAGCAGCAGCAGCGGAGAAGGCCGAGCGGCAAC
GGCGACGCTGCAGTAGTGGGAGAAAAAGGTTTCAATATGATGAGCGGGAA
GCAGGGACAAGCCGGCGGCTTGCGGCTTCAGCGTGAGAGGACTGGCGGAT
CGACCATGACTCGGACGGGAACGCCGTCTATGAACGGAGAACTGGAGCAA
ACTCCTTCAAGCTCGTCTTGCGAAGGAAATAACCAAGGCGAAGGTGAAGA
CAGCGCCGACGAAAATAGAGATGCCGAGCTCAGACGACCACCATAGAACT
GCTGTAGGGGACGGGGAGTCTATGGGCTAGTTGGCGGCGGCACAGGGAAA
CGAGGCTACTGAAGCGCCCTCAGCAATGAAGACAACGCTCAAGACCTCGC
AGTTTCAGGGGTCATTTTATTGGGCACTGATGAACCAGTCCGTGCAACAA
GAGCTCCGCATGAGTGCTGGCAGGTTGCCGTTCTTGAGGGCAGCGTGGCG
GGATTCGCGCTTCTGGGATGACATTGAGCACAAGTTCGAGGCTACCTGTT
CTGTGTGTATCGGCAGGGATCGATCATGTTCAGAAACGGATAGTTCTCCT
GAACGTTCGACATCGGGTTTGACCGTACACGTTTGTGAAGCCTGGAAGAG
CGGTCCTTGTGTACAACAACAATGTGTGGGGATGTTGGGAAACTTATTTC
TAGGTCGCATCCACCGTTGTCATACTGCGGTGAGTGTGTGCCGGCTAGAG
GTTGAACATGCGTCTTCGTGCATGCGTACGATGTCCTTACGGCTCCATCC
GCCTTCTTGCTTGCTGCAGTAATTGACTATCACGTCATGACTATCACCCT
ACTCTTGTTTTCATCAATGCAGAACATCCATATGTAGTCAGTCCCCTCAG
GCGGCTTAATTTGGGCTCCTTCAATCGAGATCCTCTCGACCTGACGACTG
GAACAGTTTTCTGGTCAAATGGCTTCTGTTAGCTTCGTTTTGCTCTGACG
AAACGCGTTTTATCGCCATTTTGGCTTACGCGGAAAATTCGCGTGAGCAG
AATGATCTCCCGTAGCTATTGTCTTTACAGATGTGCCGATATGGCATGGC
GTGGGTGGTCGCTGAACCTGCGTTTAATGTTCCTCATTCGCACGGCGTGT
TTTTGTTTTTTGGTTTTCGTTATACCACGACTGGTGCCCCCAGGGAAAGA
ACTACATCTTGTATTTTTACGTTCGGGTCCAACAGTCCACTTACTTGACT
TAGTTTAGATTTTAAAGTTTAAGCCGCATGATGTACATAGGGTTGCGAAA
TGAATAGGCGTGGTCAACACATTTAAGTTGTTAAAGAAAACATCTCCGGT
GCCTGTTGCATACCGGTACTGGTTACAACAGTAGCGACGTCGCCCAATTT
TTCCACAAGATTGTCTAGTGATTTTTACCTAGCACAGCCATTGAAATGGG
TTGTGGGACTTGTCCTCACGCTGGCTCGATAGCGTTGCTTTTCATGGGCA
AAAACATCCCGAGTGATACGTTTCTTTTTCGCGGAGTCGAGTTCCGTCTA
CGTCTACCCCTTTGACTGCGGTCTGGATACCTCCGAAGCAAGGATGCTAT
ATCCAGGCATTGACTACTCAGGGGGCTCGGAAACGTATTTCCAGCGACAG
GGTCGAGTCTTTTTTGTATGCAGGGTTGAGTGGTGTTTCAAGGATTTGCT
GAGTGTATCGTGGGGAAAAGCTATGTTTCCTGCCGCATTGGACGAGGATA
TCAGACATCTCATTTACGAGGTAACTCAGGTGGGCTCCAACCCGCTGCGT
CCATCGACTCGAAACTTGCCACGATTGAATCATGAATCTGGAGAGGTACT
GACAGTTTGTTGTTGGGGCGAACATCAAAAGCAAATAAAAATTTACCATC
ACGTACGGTCCGGCGATCGATAATTTATTATGTGGCCTTCTCTCACGGCG
GCAGTGGACCCGGCCAGCCTCTACAGATGGCGCAGCGATGTACGAATTTG
GCAGCTGAGATCTTTGGCCTCAAAGTTTTAGGATTACCGTAAGAACTTGC
GCACAATTGTGATCCCTTTGCGAGTGGCTGTTGGCAGCGCATATGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig10:694939..697636+

>mRNA_P-littoralis_Contig10.197.1 ID=mRNA_P-littoralis_Contig10.197.1|Name=mRNA_P-littoralis_Contig10.197.1|organism=Pylaiella littoralis U1_48|type=CDS|length=654bp|location=Sequence derived from alignment at P-littoralis_Contig10:694939..697636+ (Pylaiella littoralis U1_48)
ATGTGGACACAGCAAAACGGAGCTGGTGGCGGCAAGCTCCAAGAGACGGC
GCTGTCCTTTACAGGAGTCGTCACCATAATCACCTTCTGCTGCTGCTCGA
CCATGTCGTGCGTGGCTCTGTGCATCAAGTGCGTCAGCTGGATGGTCGGA
CATCGCGGCAGGCGACGGAGGATCTTTCTCCTACCCGAACAAGGGTGGCG
GCCGGACCTCGGGCAAAACGACGACGAGGAGGACGGAGAAGAGCTCTGCC
CGTGCCGAACACCGCGGACGGTCATCGTTTTGAATACCATCCCCGCAGAG
CAGCGGAATGGCCGTGTCCTGCAAACCTCGGAGATCGAGCTTCGAGAGGT
GCCGTTCGGTAACATAGAGGAGCAGCAGCAGCAGCAGCGGAGAAGGCCGA
GCGGCAACGGCGACGCTGCAGTAGTGGGAGAAAAAGGTTTCAATATGATG
AGCGGGAAGCAGGGACAAGCCGGCGGCTTGCGGCTTCAGCGTGAGAGGAC
TGGCGGATCGACCATGACTCGGACGGGAACGCCGTCTATGAACGGAGAAC
TGGAGCAAACTCCTTCAAGCTCGTCTTGCGAAGGAAATAACCAAGGCGAA
GGTGAAGACAGCGCCGACGAAAATAGAGATGCCGAGCTCAGACGACCACC
ATAG
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