mRNA_P-littoralis_Contig95.88.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig95.88.1
Unique NamemRNA_P-littoralis_Contig95.88.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig95.88.1 vs. uniprot
Match: D8LIF7_ECTSI (Transmembrane protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF7_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 3.470e-98
Identity = 178/212 (83.96%), Postives = 182/212 (85.85%), Query Frame = 2 
Query:  218 ELLEWRRRQHILARQKNYAEAQKVKKIADQLEESERTATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVMGTIPGVMA-MPPDPSQKIPPEARGRVRRKKKAASAG---GRGSTAAGFPSATTPAGMGLGEAGGGGGEIETNRTFVTSRGFPEVDHPSVIDGQA 841
            ELLEWRRRQHILARQKNYAEAQKVKKIADQLEESER ATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVMGTIPG+ A MPPDPSQKIPPEARGRVRR            RGSTA GFPSAT PA +  G  G G    + NRTFVTSRGFPEVDH  V+DGQA
Sbjct:    8 ELLEWRRRQHILARQKNYAEAQKVKKIADQLEESERNATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVMGTIPGLTASMPPDPSQKIPPEARGRVRRXXXXXXXXXXXARGSTA-GFPSAT-PAELAQGGTGAGEDGGDANRTFVTSRGFPEVDHLGVVDGQA 217
[Close]
BLAST of mRNA_P-littoralis_Contig95.88.1 vs. uniprot
Match: A0A6H5JCX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX9_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 9.840e-84
Identity = 159/200 (79.50%), Postives = 168/200 (84.00%), Query Frame = 2 
Query:  254 ARQKNYAEAQKVKKIADQLEESERTATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVMGTIPGV-MAMPPDPSQKIPPEARGRVRRKKKAASAG---GRGSTAAGFPSATTPAGMGLGEAGGGGGEIETNRTFVTSRGFPEVDHPSVIDGQA 841
            AR+      ++VKKIADQLEESER ATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVMGTIPG+ ++MPPDPSQKIPPEARGRVRRK           RGSTA GFPSAT PAG+  G AG G    + NRTFVTSRGFPEVDH  V+DGQA
Sbjct:   35 ARRTTRKHKRRVKKIADQLEESERNATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVMGTIPGLTVSMPPDPSQKIPPEARGRVRRKXXXXXXXXXXARGSTA-GFPSAT-PAGLAQGGAGAGEDGGDANRTFVTSRGFPEVDHLGVVDGQA 232
[Close]
BLAST of mRNA_P-littoralis_Contig95.88.1 vs. uniprot
Match: A0A836C7C9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7C9_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.640e-42
Identity = 89/118 (75.42%), Postives = 103/118 (87.29%), Query Frame = 2 
Query:  218 ELLEWRRRQHILARQKNYAEAQKVKKIADQLEESERTATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVM 571
            ELL+WRRRQH+LARQ NYAEAQKVKKIADQLEESER A  E+  L++ RKEA FR QQQ+ELQALL RIDARR+EH+KQR LDSKRLLQRNRNVQ VLE+KQ+ EG +LT EI+K+V+
Sbjct:  142 ELLDWRRRQHLLARQHNYAEAQKVKKIADQLEESEREAMHESHALYVGRKEAGFRAQQQAELQALLMRIDARRREHLKQRALDSKRLLQRNRNVQAVLEAKQSSEGQRLTAEIRKTVL 259
[Close]
BLAST of mRNA_P-littoralis_Contig95.88.1 vs. uniprot
Match: A0A7S2XWE0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWE0_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.990e-41
Identity = 87/117 (74.36%), Postives = 100/117 (85.47%), Query Frame = 2 
Query:  218 ELLEWRRRQHILARQKNYAEAQKVKKIADQLEESERTATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSV 568
            ELLEWRRRQH+LARQKNYAEAQKVKK+ADQ+E+ ER A  +      ARKEA FR QQQ+ELQALLKRIDARRKEHIKQRN+DSKRLLQRNRNVQ VLESKQ VE  ++ ++IKK++
Sbjct:  191 ELLEWRRRQHMLARQKNYAEAQKVKKVADQMEDRERQAMQQQNAAVFARKEAKFRAQQQAELQALLKRIDARRKEHIKQRNIDSKRLLQRNRNVQAVLESKQTVECNRVYQDIKKNL 307
[Close]
BLAST of mRNA_P-littoralis_Contig95.88.1 vs. uniprot
Match: A0A6V1W3Y9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1W3Y9_HETAK)

HSP 1 Score: 157 bits (396), Expect = 6.510e-41
Identity = 87/117 (74.36%), Postives = 100/117 (85.47%), Query Frame = 2 
Query:  218 ELLEWRRRQHILARQKNYAEAQKVKKIADQLEESERTATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSV 568
            ELLEWRRRQH++ARQKNYAEAQK+KKIADQ+EE ER A  ++     ARKEA FR QQQ+ELQALLKRIDARRKEH+KQR +DSKRLLQRNRNVQ VLESKQNVE  +L  E+KK++
Sbjct:  225 ELLEWRRRQHLMARQKNYAEAQKIKKIADQMEERERQAMQQSNAAVFARKEAKFRQQQQAELQALLKRIDARRKEHVKQRAVDSKRLLQRNRNVQAVLESKQNVECNRLFAEVKKTI 341
[Close]
BLAST of mRNA_P-littoralis_Contig95.88.1 vs. uniprot
Match: A0A7S2WV09_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV09_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.260e-40
Identity = 85/117 (72.65%), Postives = 100/117 (85.47%), Query Frame = 2 
Query:  218 ELLEWRRRQHILARQKNYAEAQKVKKIADQLEESERTATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSV 568
            ELLEWRRRQH+LARQKNYAEAQ++KKIAD+LE+ ER    ++  +  ARKEA FR QQQ+ELQALLKRIDARRKEHIKQRNLDSKRL+QRNRNVQ VLESKQ VE  ++  EI+K++
Sbjct:  216 ELLEWRRRQHMLARQKNYAEAQRIKKIADKLEDKERKGVEQDTAIIFARKEAQFRQQQQAELQALLKRIDARRKEHIKQRNLDSKRLMQRNRNVQAVLESKQAVESNRIFSEIRKNL 332
[Close]
BLAST of mRNA_P-littoralis_Contig95.88.1 vs. uniprot
Match: A0A067CTU6_SAPPC (EF-hand domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CTU6_SAPPC)

HSP 1 Score: 150 bits (380), Expect = 9.240e-39
Identity = 90/140 (64.29%), Postives = 102/140 (72.86%), Query Frame = 2 
Query:  218 ELLEWRRRQHILARQKNYAEAQKVKKIADQLEESERTATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVMGTIPGVMAMPPDPSQKIPPEAR 637
            EL+EWRRRQH LA+QKNYAEAQK+K IAD LE +ER    EN  +   RKE  FR QQQ+E+QALLKRID RRKEHIKQRNLDSKRLLQRNRNVQ VLESKQ+VE  K  ++I+    G  P    +   P   IPPEAR
Sbjct:  213 ELIEWRRRQHRLAQQKNYAEAQKIKLIADDLEAAERANVNENLQVIFTRKETKFRQQQQAEIQALLKRIDGRRKEHIKQRNLDSKRLLQRNRNVQAVLESKQSVEATKKLQDIRA---GLNPRDRIVSKHPQSVIPPEAR 349
[Close]
BLAST of mRNA_P-littoralis_Contig95.88.1 vs. uniprot
Match: A0A7S2GCP4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCP4_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.260e-38
Identity = 89/134 (66.42%), Postives = 104/134 (77.61%), Query Frame = 2 
Query:  218 ELLEWRRRQHILARQKNYAEAQKVKKIADQLEESERTATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVMGTIPGVMAMPPDPSQK 619
            ELLEWRRRQH+LARQKNYAEAQK+K IAD+LE  E+ A  ++     ARKEA FR QQQ+ELQALLKRIDARRKEHIKQRNLDSKRL+QRNRNVQ VLESKQ VE  ++  +I+K++   +    A PP  S K
Sbjct:  208 ELLEWRRRQHMLARQKNYAEAQKIKIIADKLENKEKAALEQSTASLFARKEAQFRQQQQAELQALLKRIDARRKEHIKQRNLDSKRLMQRNRNVQAVLESKQAVESNRIFADIRKNLY-QVAYTKAPPPPKSAK 340
[Close]
BLAST of mRNA_P-littoralis_Contig95.88.1 vs. uniprot
Match: K3WGJ8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGJ8_GLOUD)

HSP 1 Score: 146 bits (368), Expect = 2.050e-37
Identity = 86/140 (61.43%), Postives = 103/140 (73.57%), Query Frame = 2 
Query:  218 ELLEWRRRQHILARQKNYAEAQKVKKIADQLEESERTATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVMGTIPGVMAMPPDPSQKIPPEAR 637
            EL+EWRRRQH LA+QK+Y EAQK+KKIAD++EE ER+   E       RKEA  R QQQ+EL ALLKR+D RRKEH+KQRNLDSKRLLQRNRNVQ VLESKQ VE  K  ++IK S++   P   ++P      IPP+AR
Sbjct:  164 ELIEWRRRQHRLAQQKSYGEAQKIKKIADEIEEDERSKMNEEHRQIFTRKEAKLRQQQQAELHALLKRVDGRRKEHLKQRNLDSKRLLQRNRNVQAVLESKQIVEATKKLQDIKMSLL---PKERSIPRGSYNVIPPQAR 300
[Close]
BLAST of mRNA_P-littoralis_Contig95.88.1 vs. uniprot
Match: A0A7S4EBY1_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EBY1_9STRA)

HSP 1 Score: 145 bits (366), Expect = 8.580e-37
Identity = 84/126 (66.67%), Postives = 98/126 (77.78%), Query Frame = 2 
Query:  218 ELLEWRRRQHILARQKNYAEAQKVKKIADQLEESERTATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVMGTIPGVMA 595
            ELLEWRRRQH+LARQKNYAEAQ++KKIAD+LE+ ER +     G   +RK+  FR QQQ+ELQALLKRIDARRKEH+KQR LDSKRLLQRNRNVQ VLESKQ  E      EI+K++M +   V A
Sbjct:  238 ELLEWRRRQHMLARQKNYAEAQRIKKIADKLEDKERKSCENMSGGAFSRKDGQFRNQQQAELQALLKRIDARRKEHLKQRTLDSKRLLQRNRNVQAVLESKQAAESSATFMEIRKNLMQSTTQVAA 363
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig95.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIF7_ECTSI3.470e-9883.96Transmembrane protein, putative n=1 Tax=Ectocarpus... [more]
A0A6H5JCX9_9PHAE9.840e-8479.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C7C9_9STRA2.640e-4275.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XWE0_9STRA2.990e-4174.36Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1W3Y9_HETAK6.510e-4174.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2WV09_9STRA1.260e-4072.65Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A067CTU6_SAPPC9.240e-3964.29EF-hand domain-containing protein n=2 Tax=Saproleg... [more]
A0A7S2GCP4_9STRA1.260e-3866.42Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
K3WGJ8_GLOUD2.050e-3761.43Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S4EBY1_9STRA8.580e-3766.67Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig95contigP-littoralis_Contig95:333596..339512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIF7
Model size1050
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue3.75e-22
EggNOG OGs2CNBR@1|root,2QV22@2759|Eukaryota
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-18_003840.3
Cds size279
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig95.88.1prot_P-littoralis_Contig95.88.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig95 333799..334077 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791864.8345947-UTR-P-littoralis_Contig95:333595..3337981680791864.8345947-UTR-P-littoralis_Contig95:333595..333798Pylaiella littoralis U1_48UTRP-littoralis_Contig95 333596..333798 -
1680791864.8666754-UTR-P-littoralis_Contig95:334077..3340831680791864.8666754-UTR-P-littoralis_Contig95:334077..334083Pylaiella littoralis U1_48UTRP-littoralis_Contig95 334078..334083 -
1680791864.877645-UTR-P-littoralis_Contig95:335544..3357121680791864.877645-UTR-P-littoralis_Contig95:335544..335712Pylaiella littoralis U1_48UTRP-littoralis_Contig95 335545..335712 -
1680791864.8927686-UTR-P-littoralis_Contig95:336607..3367151680791864.8927686-UTR-P-littoralis_Contig95:336607..336715Pylaiella littoralis U1_48UTRP-littoralis_Contig95 336608..336715 -
1680791864.9072485-UTR-P-littoralis_Contig95:337604..3376731680791864.9072485-UTR-P-littoralis_Contig95:337604..337673Pylaiella littoralis U1_48UTRP-littoralis_Contig95 337605..337673 -
1680791864.9213614-UTR-P-littoralis_Contig95:339295..3395121680791864.9213614-UTR-P-littoralis_Contig95:339295..339512Pylaiella littoralis U1_48UTRP-littoralis_Contig95 339296..339512 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791864.8479083-CDS-P-littoralis_Contig95:333798..3340771680791864.8479083-CDS-P-littoralis_Contig95:333798..334077Pylaiella littoralis U1_48CDSP-littoralis_Contig95 333799..334077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig95.88.1

>prot_P-littoralis_Contig95.88.1 ID=prot_P-littoralis_Contig95.88.1|Name=mRNA_P-littoralis_Contig95.88.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=93bp
MGTIPGVMAMPPDPSQKIPPEARGRVRRKKKAASAGGRGSTAAGFPSATT
PAGMGLGEAGGGGGEIETNRTFVTSRGFPEVDHPSVIDGQAV*
back to top

mRNA from alignment at P-littoralis_Contig95:333596..339512-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig95.88.1 ID=mRNA_P-littoralis_Contig95.88.1|Name=mRNA_P-littoralis_Contig95.88.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5917bp|location=Sequence derived from alignment at P-littoralis_Contig95:333596..339512- (Pylaiella littoralis U1_48)
TGTTTTTGTGTTGTGTTTGTGTCTGTATGTACGATATGTGTTTGGTGTGT
GTTGGGAGGGCCGCAAGCGGACACCTCCCCGGAAAAAAATTATGCGGTAG
AGATACCCCCGAAGGAATATTCTCCAGGGATTACAGCACTCCAGGGTCTA
GCCCAGTGCAAGAGCCTGCTCCCCCTGGGGTCACCAGTCATCCTGACCAC
TGGCAAGCCCCCGCCAGGTAAGTATGCTCGCCTGCACGGGAGAAATGCGA
GTTTATGATGTGCGGATGTCAATAACCTACTGCTTTGCTCAGCGCCAACG
CGGCAAACTCTGCGTTTGCCCCCACGTTATTTGACTTGTTTTTTCTACAG
CTGCAGCAATCAGTCGTCATGTAAATAAAGCTCTTGAACAGCTCTAGGTG
TCTACAGGGGGGCTGCGCCGGCGCCCGAGAGGGCGCCCTTTGTTGCTGGT
TATTCGTCCGGATACTACATGGAGGGTGTGGTGGTGGAATTGAGTTGATA
CTACACAGGTGTGGGTTGATATTATTATCGTTTCAAGGGGTTGAGAGGTA
AAAATAAAGTTATGGGGGGTATTGTTATGTAATAATGGAATGAAGGCTGG
CTGTGTGTGGTGTGTGTGTGTGATGTGTGTGTGTGTGTTGTCATCCCTTT
CATTAGACGCCACTCTACACCTTTCGGGTAGGTAGACGCTCCAACCGGGG
TCACACAGGGGGAAGTCAACACAGGAGTGTTTTTTTTTTTTTCTCCACTT
CCCTCTGCGGTGCTTTCCTTTTTGGTTGTGCTTTTATCGCGAGAAAGGGG
ACAGCAATCCCTTTCCCTCGTCGATGGTACGATCGAATCTTGTTTACTCA
CGAATTGATCGCTTTCCACTTTCACGCGCAATGTGATGCCATCCCTTTAA
TTGGACCCCACTTTACACCTTTCGGGTAATAGGTAGACGCTCCAACCAGG
GTCACACAGGGGGAAGTCAATACAGGAGTTTTTTTTCCTTTTTTTCTTTT
TTTTTCTCCACTTCCCTCTGCGGTGCTTGCCTTGTTTTGGTTGAGCTAAA
AAAAAAGAAATGTGCAGAGTGAGGTTTTGTATAAATTGTTTACCTTGACG
TAAATAATGAAGTCACGCGTTTTCGAGTCCGTGAAGAAGGTCGTTGGGAC
TAGAGGGGAATGGCAAAACGAAATAGAGGCAGCAATAATGTTGTCGTGAA
TAATGAACGGACTCGCAGGAAGGAAGGAAGGTAGATCGGACAACGCCAAC
CGTTCATCATGAAGAAGAAGGCAGAACACAGATAGATACAGTAGATAATA
ATAGGTGTCTTATTAATGCGAACAGCACAGACAGACAGACGCGCCAACAT
GAGAGACTGTTGGCAATTCAATCTCGATCGGATTTTGTGACTGACTGTCA
ACGCAACGCTCATAATACATTGAATTGTTCACATGTTGTTCAAAAAGATA
AAGGTAGAGAAAATAAAGCGCAAGCAGTGTATCAACCGAATTGCAAGCAC
TTTCTTCGCTGAGGTGGTGTCACCCGGAGGAGGTGATACGAAAACGAGGG
CGCAGACCATACATAGAACAGGCATGAAGCTGAACAAACTCGATCGAAAA
CTACTCACTACGCAAACTGAACGTAGAATAATATATACTTCGAAGTACAA
CAGAAAGGGCATGAGGCTGAAGGCCTGTCTCCAACCTGCAAAAAAAACGA
ATTTTGAAGACAGATGTGTGTGTGTGGGCGTACCACATCAGATCATGGGC
GACAACGACGTGTTTCCCTGCACTCGGCACCTTTTGTTTCACGCCACCCG
TGCACTACCCGTCCGTGAATCCCTTACCTGCACAAACAGGAACTTTTGGA
ATGGAGGCGTCGACAGCATATACTTGCACGCCAGAAGAATTACGCAGAGG
CCCAGAAGGTAGGCATTTTTGAAACTGCTGTTCTGCTGCTGTGTGGCAGA
TCGGCAGTCAGTCACGTTATCTTTGACTTATCATGTGTTGTATGATATGA
ACTTCGTATATATACAACAGCACAAAGAAAGAAGAAGTCACCCCCGAGGC
GCGCGCCCCCCATATGTTCTCGGCACGAACTTTCTTTGTCAACAACAACA
AACAGCAAACTAAAAATCGAAGTCCTTTATTACAGTACTCCGAAGTATAT
ACTTCTTCTGCGCTGAGGCGTTTTACGGTAGCCCCCCTGTTCGTTAGGTT
TATCCAATCTAACGAACACCCCCCACGATTTCTATCACGAAGGTCGCCGG
CCTTGAAACCAGCTCCTGGCCCTATACACGACATGAAGTCTGGAGCATCT
CGTACGATGGCGACTTCATCTTTCGATAGCCAGCCCTCGGCATAATATTG
TACAAATATAACTTCACATGCTGCATGTATTTTTTTCTTTTTGCAGGCCC
TTCCTCTCTCGTCTGTCTCTCTATAAGCTATGATGACACGTTTGTTCAAG
AAAATCGCTGGTTTTGGGGGATCCTATATTCTCATCATCAAAGAATCAGT
CCACTGACGATTTAAAAATTGGCGAACGGAGACACGAGTCCTAAGATCCT
TCGTCCGTTTGATGAACGAACGCGTTCAGCTTGTTTTGAGTGAGACAAAA
AATGTTGTTTATTTTGTGAGGATATATATCCCGTGGCCGTGCAATTTTCG
TTAGATAGATGTAGCCTACAACAACAACAAAAGAGTACATCTATGAATAC
TGATTTTGCTCGAACTGAGTACAAAGTATTTACTTCGTATTTTTTTAGCC
TCTCAACGCTGTTGGTACTATCTTTCTTTCCCGAACAAACAAACAAGGTG
AAGAAAATCGCGGACCAGCTGGAGGAGTCGGAGCGAACCGCTACCACTGA
AAACTGGGGGTTGTTCCTGGCAAGGAAGGAAGCCGCTTTCCGTGGCCAGC
AGCAGGTATTTCATACGTTTCGTGTACTACTGCAACTGCTGTGGTCCTAC
TAATACCATCCTACTGCAACTGCTACTACTACTGTACTACTTCAGTACAT
ACAATATTTTCGAGGTACCTGGTATATGTTAGAACAACATCGGGCGGTAT
ATCTCTATCCCTGTTTTATGCCATTTTTTTTGTGTGTTTGGCCTTCTTCT
ATCATATTTCATTGTCGTTTTTTCTTTCCTAAATTACTTTGTAACCACGG
GCTAGACTTTGGCGGTTAGCTAACAGTGCGAGAATCAATAAATATCGACG
AAACAACGACAAGTTGACTTCACGAGAGAGAAGAGTGAGCACCACCTCCC
CCCTCGATAACATATATTGGTATGATACAAGAAAGCCCCCCCCCCCCCCC
CCCCCCCGCCACCCACACTCAGTCAGTCAGTCAGCATACGCGGTGAAAAG
TTATTTTCGGCATGCTTAAAAGCAATGTGTTGATGACACGCACAACAGGA
GTTTGTTCGTCGAGCAAGCCAGGGAAGAAGGCTTGAAAGCGTAAATAAAG
TGTGGGGACTGAGCGTGCCTTTGGAGTACATGTTCGGCGAGCACATGGTA
ATAAAAATAGTTATCGACTTTCAGCGCTACCACTGTCTGTCTGCTTTCAG
ACGGTCAATATCCTGCAGCTTTTGGATGAGTGACGTGTTTTGCTGTGCTG
TTAAGGGTGATGAAATCAGCTCCCCTGTGAGTATAATCCTCGCTGGTATT
CCAACAACAACCAATGATACGATACGATCATCATCGTTCATCTCGAAACA
GCAGCTTCGGACCACACCAGGAACGGCCTCCTTGTGACCGATCCCGTTCC
GTCGCTTTGCACTTGAAACGCATCATCCTGACTGTGCGTCGTCGTTGCAG
TCCGAGCTACAGGCGCTGCTGAAGCGGATCGACGCCCGGCGCAAGGAGCA
CATCAAGCAGAGGAACCTCGACAGCAAACGCCTGCTGCAGCGCAACCGCA
ACGTCCAGACCGTTCTGGAGTCCAAGCAGAACGTGGAGGGGCTCAAGCTC
ACGGAGGAGATAAAGAAGGTGCGAGTCAATATGATACTCTCCATGTCGTA
CGTAGCAATAAGTAGCAGTCCCAGGCTGCGCTCGCGGGGGACACACAATG
TGGCGGTGGGGGTGTCTATTTCGGTGTTGTCCGCAGAGGAACTTGAAAAA
CAATTTGTGTGCAAATTGGGGGGGGGGGGGGCGAGGAAGAGGAAGAGGGG
GAGGAGGAGAGCGATGAGGGAAGGTTGGCGGGAAACAGAAGAGAGTACAG
TATCGAGTGTGCTCAGCTGCAGGCGGGGAGGGGAGTGACGGGGACAGAAC
CGGGGTGTGCAATAAGTACTCCGAGGTATGACGTCGAGGTTAACTTACAC
TTCTTCTCTCTCCCCTTGTTCAACACAATCCCCGACAAATATATTTGGAA
ATGGGTTTTCCTTCGATTTGCCTAAAAAAAAAGCCGAGCTATTAGATGTT
GTCCATCGCTGAAGAGTTTCGATTGGTAGGAGGATTGGACTGAGTCAAAC
ATTGGTAAAATAGTAGTAGGCGGGTACAAAGGGCCGGGGAACGGGGAGAC
GATTGCGGTACTCATTCGTTGTGCGTTGCCTTCTTCGCCTTGGGACAATC
GACCACGGAGCGAAGCACCGTTCGTGTTCCTACTGCCACACACAGCAACA
GCGAACCCACCATTCAAGTGTCTCTGTACGCGATTGCCAGCTTTGTACAC
CAACATGCTTGGTATCTCCTCATACTCCGCGGTAAACTCCACTGCTACTA
CTTAATTGCCTGAAGACCAGGATGAAGAGAGAGGGAACTTCAAGCATAAT
TGATACTGTATGATAGCAAGTAGGTCTGCCGGGTTTTTTTATCCTCATAG
AACCCTCTTTGTTTGTGGGCGACCCTACAGAAAGATGGCTGTTTTTTTGT
GGCCCAAGCTTTCCGCGACGACGACCTGTGGGAGGTGTCATCAAGCACGC
ACCGTTTTTGTGAAAGCGTGTTCTCCTTTTTTTTTTTGTCTCGTCGATTA
CTTTCCAGCGGATCATAATAACGCACGATATCTCGGCGCATGCCCTTCCC
TTACTGTACTACTCAGAAGCAAGTCGGCTGGACACTCCCTTCCACCCCAA
TCAGGGAATTGCCAAAATGGTAGGTAGTCCCTCAAGAGCTGTCATCCACG
ACTCGGGATACATGGCAGACAATGAAGATACGACTAGCAATATGGATTAA
AGTGTTTTTCTACTGAACGTGCAGAAATTGCACAAACACACACTCTAGAG
AGAGGTTTCTGTTCTTCTGCGTGTGTTTGTATGTTTTGTTTTCTTTCTGC
TGTTCGAACCATACACCATACTTCGAAGCATCAAACAAAACTCATCACCA
TGCCCAAATTATTCAACCCCACCCCCCGCCCACCCGCCGCTGCCCATTTC
TCACACTCGATAACCCTCGTATCTCTCCGCGAATCGCCAACAACAACAAC
AACAACATCAACAACGACAACGACAACAGAGTGTGATGGGGACAATACCG
GGCGTAATGGCTATGCCCCCGGACCCTTCCCAGAAAATTCCTCCGGAAGC
TAGAGGCAGGGTGCGCAGAAAGAAAAAGGCAGCTTCGGCGGGGGGGCGTG
GTTCCACAGCAGCGGGGTTTCCGTCCGCCACCACCCCCGCGGGGATGGGG
CTGGGCGAGGCTGGAGGAGGGGGCGGGGAGATAGAAACGAATCGCACGTT
CGTTACTAGCAGGGGTTTTCCGGAAGTTGACCATCCGAGCGTCATCGACG
GACAAGCTGTATAATACACAGCTCAGTATTGGACACTTACATAAATAATG
GTGAAAGTTTTTGTTGTTTTTTTGGGTTGTGCTGGAGGGCTTCTTTTCAC
CCACAGCCAGAACAAATTACATTATTACTACGTCAATACTTGAGGTTTGT
TTTTTTACAGCTTTTCAATTCGACCCGCGTCAAAAAATAGAAGGACCTAC
GGTTATGTGCATATTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig95:333596..339512-

>mRNA_P-littoralis_Contig95.88.1 ID=mRNA_P-littoralis_Contig95.88.1|Name=mRNA_P-littoralis_Contig95.88.1|organism=Pylaiella littoralis U1_48|type=CDS|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig95:333596..339512- (Pylaiella littoralis U1_48)
ATGGGGACAATACCGGGCGTAATGGCTATGCCCCCGGACCCTTCCCAGAA
AATTCCTCCGGAAGCTAGAGGCAGGGTGCGCAGAAAGAAAAAGGCAGCTT
CGGCGGGGGGGCGTGGTTCCACAGCAGCGGGGTTTCCGTCCGCCACCACC
CCCGCGGGGATGGGGCTGGGCGAGGCTGGAGGAGGGGGCGGGGAGATAGA
AACGAATCGCACGTTCGTTACTAGCAGGGGTTTTCCGGAAGTTGACCATC
CGAGCGTCATCGACGGACAAGCTGTATAA
back to top