mRNA_P-littoralis_Contig941.33.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig941.33.2
Unique NamemRNA_P-littoralis_Contig941.33.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig941.33.2 vs. uniprot
Match: A0A1V9ZSL0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSL0_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.360e-18
Identity = 71/265 (26.79%), Postives = 123/265 (46.42%), Query Frame = 1
Query:    7 LILYASELAACVGMNKYKSVEDAKQSAWRRWDPPSFRLASEHNPLAQKSPEEVRRRIEPVDEARHKLVGSREIAETLNKSLTADSSTADVKRV----------IENVRVKDVKEARESVVHVVNCKRGMQNEHKGIASYENSKRVKLHGKNTQFYKKCIGETSAGT----KVYVGGRADGVTHDKVVEIKCRRNRLLSTLPIYEQVQAQAYLFL---TNKPVVEVVQKYDGMTRSDEYVADTEFWAE-VCDAALNFASELENLID 747
            +++YASE+A   G++ Y+ + D   S W+R D    +       LA   P  +  R+E       KL+    + + L    T   +T DVKRV          + N+   +  E  +++   ++ + G+  E   +  YE + +  +  +N +F+ K +G  +        V VGGR DG+T +KV+E+K R  R ++ LP Y+  Q Q YLFL   T   +VE ++K    +++ +   D   W E V      F++ L   +D
Sbjct:   42 IVIYASEVAVICGVHPYRCISDVFFSTWKRTDKAHVQQLEAQ--LAPSIPATIEERVE-------KLIQDEPLVQELLD--TPSQTTEDVKRVKTQVKEQIEALRNLTADEKAEITQALNSTLHTQFGIAQETHALTQYETTTQTSVEQRNAKFWSKRLGRVATADGGYRNVLVGGRIDGLTGEKVIEVKNRMTRFMTPLPKYDVYQLQTYLFLLDSTEGEIVEHLKKTADSSKTTKVAWDPALWDENVIPYVARFSNALAKFMD 295          
BLAST of mRNA_P-littoralis_Contig941.33.2 vs. uniprot
Match: UPI00032B3D02 (unknown similar to AMEV240 n=1 Tax=Mythimna separata entomopoxvirus 'L' TaxID=1293572 RepID=UPI00032B3D02)

HSP 1 Score: 81.6 bits (200), Expect = 1.210e-14
Identity = 52/175 (29.71%), Postives = 91/175 (52.00%), Query Frame = 1
Query:  235 LNKSLTA--DSSTADVKRVIENVRVKDVKEARESVVHVVNCKRGMQNEHKGIASYENSKRVKLHGKNTQFYKKC--IGETSAGTKVYVGGRADGVTHDKVVEIKCRRNRLLSTLPIYEQVQAQAYLFLTNKPVVEVVQKYDGMTRSDEYVADTEFWAEVCDAALNFASELENLID 747
            +NKS++A  +  ++ +   I + ++KD+      +   V+ KRG+  E   + +Y     V +  ++  F KK       +    + V GR DG+  D ++E K RRNRL + +PIYE+VQ + YL+LT+     ++Q Y+   +   YV D +F+ E+C    N  S  +N+ D
Sbjct:   97 VNKSISAKKEEDSSQIINTISDNKLKDI------ITEDVSLKRGILKEDNNLNTYNKKYNVIVANRDKYFIKKLTTFEYNNKTINIIVCGRVDGIIDDLLIESKNRRNRLFNYIPIYERVQLEMYLYLTDLKKCSLIQHYNEEIKVLNYVKDDDFFTEIC---CNLTSYFKNMFD 262          
BLAST of mRNA_P-littoralis_Contig941.33.2 vs. uniprot
Match: A0A024U8F7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U8F7_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 9.790e-13
Identity = 69/261 (26.44%), Postives = 114/261 (43.68%), Query Frame = 1
Query:    7 LILYASELAACVGMNKYKSVEDAKQSAWRRWDPPSFRLASEHNPLAQKSPEEVRRRIEPV--DEARHKLV---GSREIAETLNKSLTADSSTADVKRVIENVRVKDVKEARESVVHVVNCKRGMQNEHKGIASYENSKRVKLHGKNTQFYKKCIGETSAGTKVY----VGGRADGVTHDKVVEIKCRRNRLLSTLPIYEQVQAQAYLFLTNKPVVEVVQKYDGMTRSDEYVA----DTEFW-AEVCDAALNFASELENLID 747
            ++L+ASE++   G N Y+ + D     W+R D    +   +   LA   PE V  +++ V  DE + + +    S  +A+   K     +    +  +    +V DV +A  S +       G   E   I  YE   +  +  +N +F+ K +G   +  K Y    VGGR DGV+ +KV+E+K R     + LP Y+ VQ Q YL+L +    E+V+     T+          D E W   V      F+  L+  +D
Sbjct:   44 IMLFASEVSVICGANPYREISDVFLGVWKRTDKTYVKGLEDE--LAPMMPETVEEKMDRVIQDEPQVQAILDAPSLSVADVQEKKKAVQAHVNALPHLTPEDKV-DVVQALHSTLQTTF---GAAQEIHAIEHYETETQSSVQQRNAKFWSKQVGRVQSADKRYRNVLVGGRIDGVSGEKVIEVKNRMRDFKTPLPHYDIVQLQTYLYLLDSTHGELVEHIKAKTKDKSKTTTVDWDPELWNTSVLPYLARFSHSLDRFMD 298          
BLAST of mRNA_P-littoralis_Contig941.33.2 vs. uniprot
Match: UPI00032B3B45 (unknown similar to AMEV240 n=1 Tax=Adoxophyes honmai entomopoxvirus 'L' TaxID=1293540 RepID=UPI00032B3B45)

HSP 1 Score: 72.0 bits (175), Expect = 6.040e-11
Identity = 40/128 (31.25%), Postives = 66/128 (51.56%), Query Frame = 1
Query:  343 VNCKRGMQNEHKGIASYENSKRVKLHGKNTQFYKKCIG--ETSAGTKVYVGGRADGVTHDKVVEIKCRRNRLLSTLPIYEQVQAQAYLFLTNKPVVEVVQKYDGMTRSDEYVADTEFWAEVCDAALNF 720
            ++ KRG+  E   IA YE      +  +N  F KK +     +    + + G+ DG   D ++E K RRN+L  ++PIYE+VQ + YLFL+N      +Q Y+   +  +Y  D  F+  +C   ++F
Sbjct:  203 LSLKRGILREDNNIAQYEKQFNTNIKNRNKFFSKKLLSFEHNNKQINIIIRGKIDGTDRDSIIESKNRRNKLFYSIPIYEKVQLEMYLFLSNYKKCIHIQHYNNDIKILDYEHDEIFFNTICTNIISF 330          
BLAST of mRNA_P-littoralis_Contig941.33.2 vs. uniprot
Match: A0A6G6XP34_9PHYC (Exonuclease domain-containing protein n=1 Tax=Dishui Lake phycodnavirus 4 TaxID=2704072 RepID=A0A6G6XP34_9PHYC)

HSP 1 Score: 59.3 bits (142), Expect = 1.600e-6
Identity = 56/235 (23.83%), Postives = 104/235 (44.26%), Query Frame = 1
Query:    7 LILYASELAACVGMNKYKSVEDAKQSAWRRWDPPSFRLASEHNPLAQKSPEEVRRRIEPVDEARHKLVGSREIAETLNKSLTADSSTADVKRVIENVRV--KDVKEARESVVHVVNCKRGMQNEHKGIASYENSKRVKLHGKNTQFYKKCIGETSAGTKVYVGGRADGVTHDK-----VVEIKCRRNRLLSTLPIYEQVQAQAYLFLTNKPVVEVVQKYDGMTRSDEYVADTEFW 690
            +I+ AS++AAC+G N+YK +++  +  W ++ P         + L  K+ +E  + I   +   H +    E     N S     + A  +R++ N  +   ++   ++     +    G +NE     + +     +LH   T FY   +  T AGT   + GR D   +D+     +VEIK R   L +T+  YE +Q   YL +T      ++++Y+   +S     D + W
Sbjct:  194 VIIKASDVAACIGENRYKKIDEVLEDMWMKYSP---------HTLKGKTRDEYAKEIIYNNHDIHSMFQEIETKRPKNSSEVVKITDAISERLMRNTHLTTNELYRVKDFFKKTLFTTFGTRNEMVTADADD----AELHEDET-FYSHEVC-TIAGTSYQIVGRIDRFEYDENKNKILVEIKNRTRGLFNTIRDYEAIQIHTYLQMTGLKTARLIEQYNDERKSYLLFRDDDLW 413          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig941.33.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1V9ZSL0_9STRA5.360e-1826.79Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
UPI00032B3D021.210e-1429.71unknown similar to AMEV240 n=1 Tax=Mythimna separa... [more]
A0A024U8F7_9STRA9.790e-1326.44Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
UPI00032B3B456.040e-1131.25unknown similar to AMEV240 n=1 Tax=Adoxophyes honm... [more]
A0A6G6XP34_9PHYC1.600e-623.83Exonuclease domain-containing protein n=1 Tax=Dish... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig941contigP-littoralis_Contig941:65017..65929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000021049
Model size765
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.08e-17
EggNOG OGs29IDH@1|root,2RRKU@2759|Eukaryota,1MBHB@121069|Pythiales
DescriptionA467L protein. Source PGD
Cds size765
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791857.4354255-CDS-P-littoralis_Contig941:65016..651801680791857.4354255-CDS-P-littoralis_Contig941:65016..65180Pylaiella littoralis U1_48CDSP-littoralis_Contig941 65017..65180 +
1680791857.4500108-CDS-P-littoralis_Contig941:65328..659291680791857.4500108-CDS-P-littoralis_Contig941:65328..65929Pylaiella littoralis U1_48CDSP-littoralis_Contig941 65329..65929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig941.33.2prot_P-littoralis_Contig941.33.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig941 65017..65929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig941.33.2

>prot_P-littoralis_Contig941.33.2 ID=prot_P-littoralis_Contig941.33.2|Name=mRNA_P-littoralis_Contig941.33.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=255bp
MALILYASELAACVGMNKYKSVEDAKQSAWRRWDPPSFRLASEHNPLAQK
SPEEVRRRIEPVDEARHKLVGSREIAETLNKSLTADSSTADVKRVIENVR
VKDVKEARESVVHVVNCKRGMQNEHKGIASYENSKRVKLHGKNTQFYKKC
IGETSAGTKVYVGGRADGVTHDKVVEIKCRRNRLLSTLPIYEQVQAQAYL
FLTNKPVVEVVQKYDGMTRSDEYVADTEFWAEVCDAALNFASELENLIDV
ESAL*
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mRNA from alignment at P-littoralis_Contig941:65017..65929+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig941.33.2 ID=mRNA_P-littoralis_Contig941.33.2|Name=mRNA_P-littoralis_Contig941.33.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=913bp|location=Sequence derived from alignment at P-littoralis_Contig941:65017..65929+ (Pylaiella littoralis U1_48)
ATGGCGCTCATTCTCTACGCCTCAGAGCTGGCGGCATGCGTCGGTATGAA CAAATACAAGTCGGTCGAGGATGCCAAGCAGTCCGCGTGGAGGCGGTGGG ACCCGCCATCGTTCCGCCTAGCGTCTGAACACAACCCCTTGGCACAAAAA TCGCCCGAGGAAGTGTTTGCTTCTTTCGGGACCAGCGTCCAAAAACTTGT GTCCAGCGCCGTTTCGTCAGAAACGGAGAAGGGTGCAACCAATATTTTGC AAGTGGCCATGAACGAAAAAGCCAATATCGCTACGCCTGAAGCAGTCGAA GCAATCTTGAAGGCGGCGTCGAATAGAGCCGGTCGACGAAGCTCGTCACA AACTCGTAGGTTCGCGCGAGATCGCTGAAACCCTGAACAAATCGCTGACC GCGGACTCAAGCACCGCCGATGTCAAGCGAGTGATCGAAAATGTACGCGT GAAGGACGTCAAGGAGGCCAGGGAGTCCGTCGTCCACGTCGTCAATTGTA AACGCGGAATGCAGAACGAGCACAAAGGCATCGCGTCGTACGAGAATTCC AAGCGCGTGAAGCTGCATGGCAAAAATACACAATTTTACAAGAAGTGCAT CGGAGAGACTAGCGCCGGGACTAAGGTGTACGTGGGAGGAAGGGCTGACG GAGTGACTCACGACAAGGTCGTCGAAATCAAGTGCAGACGCAATCGCCTC TTAAGCACGCTCCCCATATACGAACAAGTCCAGGCACAGGCGTACTTGTT TCTCACGAACAAACCCGTTGTGGAGGTGGTGCAGAAATACGACGGAATGA CGCGCTCGGACGAATATGTGGCTGATACCGAATTCTGGGCCGAGGTTTGT GACGCGGCGCTCAATTTTGCATCGGAACTGGAGAATTTGATTGACGTTGA GAGCGCGCTCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig941:65017..65929+

>mRNA_P-littoralis_Contig941.33.2 ID=mRNA_P-littoralis_Contig941.33.2|Name=mRNA_P-littoralis_Contig941.33.2|organism=Pylaiella littoralis U1_48|type=CDS|length=765bp|location=Sequence derived from alignment at P-littoralis_Contig941:65017..65929+ (Pylaiella littoralis U1_48)
ATGGCGCTCATTCTCTACGCCTCAGAGCTGGCGGCATGCGTCGGTATGAA
CAAATACAAGTCGGTCGAGGATGCCAAGCAGTCCGCGTGGAGGCGGTGGG
ACCCGCCATCGTTCCGCCTAGCGTCTGAACACAACCCCTTGGCACAAAAA
TCGCCCGAGGAAGTGCGGCGTCGAATAGAGCCGGTCGACGAAGCTCGTCA
CAAACTCGTAGGTTCGCGCGAGATCGCTGAAACCCTGAACAAATCGCTGA
CCGCGGACTCAAGCACCGCCGATGTCAAGCGAGTGATCGAAAATGTACGC
GTGAAGGACGTCAAGGAGGCCAGGGAGTCCGTCGTCCACGTCGTCAATTG
TAAACGCGGAATGCAGAACGAGCACAAAGGCATCGCGTCGTACGAGAATT
CCAAGCGCGTGAAGCTGCATGGCAAAAATACACAATTTTACAAGAAGTGC
ATCGGAGAGACTAGCGCCGGGACTAAGGTGTACGTGGGAGGAAGGGCTGA
CGGAGTGACTCACGACAAGGTCGTCGAAATCAAGTGCAGACGCAATCGCC
TCTTAAGCACGCTCCCCATATACGAACAAGTCCAGGCACAGGCGTACTTG
TTTCTCACGAACAAACCCGTTGTGGAGGTGGTGCAGAAATACGACGGAAT
GACGCGCTCGGACGAATATGTGGCTGATACCGAATTCTGGGCCGAGGTTT
GTGACGCGGCGCTCAATTTTGCATCGGAACTGGAGAATTTGATTGACGTT
GAGAGCGCGCTCTGA
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