mRNA_P-littoralis_Contig941.33.2 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig941.33.2 vs. uniprot
Match: A0A1V9ZSL0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSL0_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 5.360e-18 Identity = 71/265 (26.79%), Postives = 123/265 (46.42%), Query Frame = 1
Query: 7 LILYASELAACVGMNKYKSVEDAKQSAWRRWDPPSFRLASEHNPLAQKSPEEVRRRIEPVDEARHKLVGSREIAETLNKSLTADSSTADVKRV----------IENVRVKDVKEARESVVHVVNCKRGMQNEHKGIASYENSKRVKLHGKNTQFYKKCIGETSAGT----KVYVGGRADGVTHDKVVEIKCRRNRLLSTLPIYEQVQAQAYLFL---TNKPVVEVVQKYDGMTRSDEYVADTEFWAE-VCDAALNFASELENLID 747
+++YASE+A G++ Y+ + D S W+R D + LA P + R+E KL+ + + L T +T DVKRV + N+ + E +++ ++ + G+ E + YE + + + +N +F+ K +G + V VGGR DG+T +KV+E+K R R ++ LP Y+ Q Q YLFL T +VE ++K +++ + D W E V F++ L +D
Sbjct: 42 IVIYASEVAVICGVHPYRCISDVFFSTWKRTDKAHVQQLEAQ--LAPSIPATIEERVE-------KLIQDEPLVQELLD--TPSQTTEDVKRVKTQVKEQIEALRNLTADEKAEITQALNSTLHTQFGIAQETHALTQYETTTQTSVEQRNAKFWSKRLGRVATADGGYRNVLVGGRIDGLTGEKVIEVKNRMTRFMTPLPKYDVYQLQTYLFLLDSTEGEIVEHLKKTADSSKTTKVAWDPALWDENVIPYVARFSNALAKFMD 295
BLAST of mRNA_P-littoralis_Contig941.33.2 vs. uniprot
Match: UPI00032B3D02 (unknown similar to AMEV240 n=1 Tax=Mythimna separata entomopoxvirus 'L' TaxID=1293572 RepID=UPI00032B3D02) HSP 1 Score: 81.6 bits (200), Expect = 1.210e-14 Identity = 52/175 (29.71%), Postives = 91/175 (52.00%), Query Frame = 1
Query: 235 LNKSLTA--DSSTADVKRVIENVRVKDVKEARESVVHVVNCKRGMQNEHKGIASYENSKRVKLHGKNTQFYKKC--IGETSAGTKVYVGGRADGVTHDKVVEIKCRRNRLLSTLPIYEQVQAQAYLFLTNKPVVEVVQKYDGMTRSDEYVADTEFWAEVCDAALNFASELENLID 747
+NKS++A + ++ + I + ++KD+ + V+ KRG+ E + +Y V + ++ F KK + + V GR DG+ D ++E K RRNRL + +PIYE+VQ + YL+LT+ ++Q Y+ + YV D +F+ E+C N S +N+ D
Sbjct: 97 VNKSISAKKEEDSSQIINTISDNKLKDI------ITEDVSLKRGILKEDNNLNTYNKKYNVIVANRDKYFIKKLTTFEYNNKTINIIVCGRVDGIIDDLLIESKNRRNRLFNYIPIYERVQLEMYLYLTDLKKCSLIQHYNEEIKVLNYVKDDDFFTEIC---CNLTSYFKNMFD 262
BLAST of mRNA_P-littoralis_Contig941.33.2 vs. uniprot
Match: A0A024U8F7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U8F7_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 9.790e-13 Identity = 69/261 (26.44%), Postives = 114/261 (43.68%), Query Frame = 1
Query: 7 LILYASELAACVGMNKYKSVEDAKQSAWRRWDPPSFRLASEHNPLAQKSPEEVRRRIEPV--DEARHKLV---GSREIAETLNKSLTADSSTADVKRVIENVRVKDVKEARESVVHVVNCKRGMQNEHKGIASYENSKRVKLHGKNTQFYKKCIGETSAGTKVY----VGGRADGVTHDKVVEIKCRRNRLLSTLPIYEQVQAQAYLFLTNKPVVEVVQKYDGMTRSDEYVA----DTEFW-AEVCDAALNFASELENLID 747
++L+ASE++ G N Y+ + D W+R D + + LA PE V +++ V DE + + + S +A+ K + + + +V DV +A S + G E I YE + + +N +F+ K +G + K Y VGGR DGV+ +KV+E+K R + LP Y+ VQ Q YL+L + E+V+ T+ D E W V F+ L+ +D
Sbjct: 44 IMLFASEVSVICGANPYREISDVFLGVWKRTDKTYVKGLEDE--LAPMMPETVEEKMDRVIQDEPQVQAILDAPSLSVADVQEKKKAVQAHVNALPHLTPEDKV-DVVQALHSTLQTTF---GAAQEIHAIEHYETETQSSVQQRNAKFWSKQVGRVQSADKRYRNVLVGGRIDGVSGEKVIEVKNRMRDFKTPLPHYDIVQLQTYLYLLDSTHGELVEHIKAKTKDKSKTTTVDWDPELWNTSVLPYLARFSHSLDRFMD 298
BLAST of mRNA_P-littoralis_Contig941.33.2 vs. uniprot
Match: UPI00032B3B45 (unknown similar to AMEV240 n=1 Tax=Adoxophyes honmai entomopoxvirus 'L' TaxID=1293540 RepID=UPI00032B3B45) HSP 1 Score: 72.0 bits (175), Expect = 6.040e-11 Identity = 40/128 (31.25%), Postives = 66/128 (51.56%), Query Frame = 1
Query: 343 VNCKRGMQNEHKGIASYENSKRVKLHGKNTQFYKKCIG--ETSAGTKVYVGGRADGVTHDKVVEIKCRRNRLLSTLPIYEQVQAQAYLFLTNKPVVEVVQKYDGMTRSDEYVADTEFWAEVCDAALNF 720
++ KRG+ E IA YE + +N F KK + + + + G+ DG D ++E K RRN+L ++PIYE+VQ + YLFL+N +Q Y+ + +Y D F+ +C ++F
Sbjct: 203 LSLKRGILREDNNIAQYEKQFNTNIKNRNKFFSKKLLSFEHNNKQINIIIRGKIDGTDRDSIIESKNRRNKLFYSIPIYEKVQLEMYLFLSNYKKCIHIQHYNNDIKILDYEHDEIFFNTICTNIISF 330
BLAST of mRNA_P-littoralis_Contig941.33.2 vs. uniprot
Match: A0A6G6XP34_9PHYC (Exonuclease domain-containing protein n=1 Tax=Dishui Lake phycodnavirus 4 TaxID=2704072 RepID=A0A6G6XP34_9PHYC) HSP 1 Score: 59.3 bits (142), Expect = 1.600e-6 Identity = 56/235 (23.83%), Postives = 104/235 (44.26%), Query Frame = 1
Query: 7 LILYASELAACVGMNKYKSVEDAKQSAWRRWDPPSFRLASEHNPLAQKSPEEVRRRIEPVDEARHKLVGSREIAETLNKSLTADSSTADVKRVIENVRV--KDVKEARESVVHVVNCKRGMQNEHKGIASYENSKRVKLHGKNTQFYKKCIGETSAGTKVYVGGRADGVTHDK-----VVEIKCRRNRLLSTLPIYEQVQAQAYLFLTNKPVVEVVQKYDGMTRSDEYVADTEFW 690
+I+ AS++AAC+G N+YK +++ + W ++ P + L K+ +E + I + H + E N S + A +R++ N + ++ ++ + G +NE + + +LH T FY + T AGT + GR D +D+ +VEIK R L +T+ YE +Q YL +T ++++Y+ +S D + W
Sbjct: 194 VIIKASDVAACIGENRYKKIDEVLEDMWMKYSP---------HTLKGKTRDEYAKEIIYNNHDIHSMFQEIETKRPKNSSEVVKITDAISERLMRNTHLTTNELYRVKDFFKKTLFTTFGTRNEMVTADADD----AELHEDET-FYSHEVC-TIAGTSYQIVGRIDRFEYDENKNKILVEIKNRTRGLFNTIRDYEAIQIHTYLQMTGLKTARLIEQYNDERKSYLLFRDDDLW 413 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig941.33.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig941.33.2 >prot_P-littoralis_Contig941.33.2 ID=prot_P-littoralis_Contig941.33.2|Name=mRNA_P-littoralis_Contig941.33.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=255bp MALILYASELAACVGMNKYKSVEDAKQSAWRRWDPPSFRLASEHNPLAQKback to top mRNA from alignment at P-littoralis_Contig941:65017..65929+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig941.33.2 ID=mRNA_P-littoralis_Contig941.33.2|Name=mRNA_P-littoralis_Contig941.33.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=913bp|location=Sequence derived from alignment at P-littoralis_Contig941:65017..65929+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig941:65017..65929+ >mRNA_P-littoralis_Contig941.33.2 ID=mRNA_P-littoralis_Contig941.33.2|Name=mRNA_P-littoralis_Contig941.33.2|organism=Pylaiella littoralis U1_48|type=CDS|length=765bp|location=Sequence derived from alignment at P-littoralis_Contig941:65017..65929+ (Pylaiella littoralis U1_48)back to top |