mRNA_P-littoralis_Contig94.130.10 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig94.130.10
Unique NamemRNA_P-littoralis_Contig94.130.10
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig94.130.10 vs. uniprot
Match: D8LL58_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL58_ECTSI)

HSP 1 Score: 907 bits (2343), Expect = 1.040e-311
Identity = 465/693 (67.10%), Postives = 545/693 (78.64%), Query Frame = 2
Query:  377 MEARAPYSGDSVQAGGAAEPTTEPHA--SLNSSF------SSQTLEEVKRLLADRKPWPAFLHAGLAS-----DCPENVGEALAWMASGAVGLLNVASVGPLVPVCEAFKGLIQAAEGAAEADEKLRELISWCAFLTEVLLQHGKELDDLAPVRNPLVAFVSTTNKLAKRAKTLAARGKCTALLCFWRDRKQIQEFDAKLRKIWEDIQGHTMLDIGALIRRGLPPKTGEMAKVPQNARVLPPAFVERSDLVEAVVHELVATDRATEKAHVLHGIPGGGKTVTASAVVRCEDVRRSFQDGIFWVQVGQVGTGNPLALLKGLAEDLAHAPSNRPHTVPHEFRDVNHVISHLVGVRKQSNLRCLIVLDDVWDPQMVPLFLRTGFHCLVTTRDLAVVPRRLRGTCTAVDMLTETEALELLKKASRAPSSIPRDEGLKVADDCGFLPLAVAIIGAMGSLRADPLSPETWKGVHARLVEEPTLVQDHVGGALAVSFRELNENARTRFRKLGVLVRGVWAPVDMVAHLWEQDLSDTILLMSDLVDKSLVKVVEQSYYLHDLVLDFAKDELRKLKGKVQLVTSRQAQYLGTTSVLEDYARAGEVLRGFYALIALWQSVEDISGDKQLEVSTYSVKLKALEGSEPTAGVAFTNWAAGRLFHLQGKYAEAEPLFERVQTIQEKLRGPEHPDVATSLNNRAELL 2416
            M ARAP SG SVQAGG AEP T  ++   L+ S+      S Q L+EV+RLLA RKPWPAF+ AGL +     +CPE VGEAL WMAS  VGLL++ASVGPL PVC+AF  LI+AAEGA E  + L EL+SWC+FL  V ++HGK+ D+L P+  P+  FV+TT +LAKRAK + ARGKCTALLC  RD KQ+Q+FD KLR IW+DIQG T+L   +  R  LPPKT  MA+VP+NA+ LPPAFVER DL +AVV +LVATDRAT  AHVL G+PGGGKT+ A AVVRCEDVRRSF+DGIFWVQVGQVGTGNP+ALL+GLA DLAHAPS++PHTVPHEF DV H +SHL GVRK+ NLRCL+VLDDVWD Q+VPLFL  GFH LVTTRDLAV+PR L+G CT V+MLT  EALELLK ASRA ++IP +EGLKVA DCGFLPL +AI+GAMGS RADP S ETW+G+HA L +EP LVQD VG  LAVSF  L   ARTRFRKLGVL +G  APVDMVAHLWE D  D+ LL+ DLVDKSLVKV E +YYLHDLVLDFAKDELRKLK +V+LVT RQAQYLG  SV++DYA+AGEV+ GFYAL+ALW+SVED+SGD QLE STY   +K  E SE +  VA+  WA GRLF LQGK+AEAE L++R Q I E+  GPEHP VAT+L+ RA L+
Sbjct:    1 MAARAPSSGGSVQAGGTAEPVTAEYSFGGLHCSWTTLGIGSGQMLQEVERLLASRKPWPAFVQAGLQARYEWNNCPEAVGEALEWMASATVGLLDMASVGPLTPVCKAFTSLIEAAEGAIEVAKNLEELVSWCSFLVGVFIEHGKQEDNLRPIAKPMKDFVATTIELAKRAKAMGARGKCTALLCHRRDGKQVQDFDVKLRHIWDDIQGVTLLAFYSDFRATLPPKTAYMARVPKNAKQLPPAFVERRDLFKAVVKDLVATDRATNAAHVLRGMPGGGKTIAAKAVVRCEDVRRSFKDGIFWVQVGQVGTGNPMALLQGLARDLAHAPSHQPHTVPHEFVDVEHAVSHLEGVRKERNLRCLVVLDDVWDAQIVPLFLCGGFHSLVTTRDLAVIPRDLQGVCTEVEMLTNAEALELLKNASRATAAIPTNEGLKVAKDCGFLPLPLAIVGAMGSSRADPDSAETWRGIHALLQQEPELVQDPVGSVLAVSFCGLKGAARTRFRKLGVLAKGARAPVDMVAHLWELDHDDSTLLLDDLVDKSLVKVEEHAYYLHDLVLDFAKDELRKLKERVRLVTCRQAQYLGRMSVVKDYAKAGEVMGGFYALMALWRSVEDLSGDNQLEASTYGATVKPSEESEASEDVAYLTWAVGRLFELQGKFAEAEELYDRCQAINEEALGPEHPSVATTLHGRAGLM 693          
BLAST of mRNA_P-littoralis_Contig94.130.10 vs. uniprot
Match: A0A6H5L982_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L982_9PHAE)

HSP 1 Score: 758 bits (1958), Expect = 2.680e-263
Identity = 381/475 (80.21%), Postives = 413/475 (86.95%), Query Frame = 2
Query:  485 LEEVKRLLADRKPWPAFLHAGLASDCPENVGEALAWMASGAVGLLNVASVGPLVPVCEAFKGLIQAAEGAAEADEKLRELISWCAFLTEVLLQHGKELDDLAPVRNPLVAFVSTTNKLAKRAKTLAARGKCTALLCFWRDRKQIQEFDAKLRKIWEDIQGHTMLDIGALIRRGLPPKTGEMAKVPQNARVLPPAFVERSDLVEAVVHELVATDRATEKAHVLHGIPGGGKTVTASAVVRCEDVRRSFQDGIFWVQVGQVGTGNPLALLKGLAEDLAHAPSNRPHTVPHEFRDVNHVISHLVGVRKQSNLRCLIVLDDVWDPQMVPLFLRTGFHCLVTTRDLAVVPRRLRGTCTAVDMLTETEALELLKKASRAPSSIPRDEGLKVADDCGFLPLAVAIIGAMGSLRADPLSPETWKGVHARLVEEPTLVQDHVGGALAVSFRELNENARTRFRKLGVLVRGVWAPVDMVAHLWEQ 1909
            LEEV+R L  RK WPAFLH   A+ CPE+VGEALAWMASG VGLLNVASVGPL+P+CEAFKGLIQAAEGAAEADE LRELI+WCAFLT+VLLQHGKE+D LAPV  PL  FVSTTN+LAKRAK LA R KC ALLCF RD KQIQ+FDAKLR IW DIQG T+L + A  R   PPKTGEMAK+P NA  LPPAFVERS LVEAV  +L A +RAT+ A VL GIPGGGKTV AS+VVRCE+VRRSF+DGIFWVQVGQVGTGNP ALLKGLAEDLAHAPSNRP TVPHEFRDV HV+SHLVGV +Q NLRCL+VLD+VWD +MVPLFLRTGF CLVTTRD+A+VPR L GTCT VDMLTE EALELLKKASRA SSIPRDEGL+VADDCGFLPLA+AIIGAMGS R +P SPETW+GVHARLVEEP+LVQDHVGGALAVSFREL+E AR RFRKLGVL RGV APVDMVAHLWEQ
Sbjct:    9 LEEVQRHLEGRKKWPAFLHGEWANGCPEDVGEALAWMASGVVGLLNVASVGPLMPICEAFKGLIQAAEGAAEADENLRELIAWCAFLTDVLLQHGKEVDALAPVMKPLRDFVSTTNQLAKRAKRLATRRKCAALLCFARDGKQIQDFDAKLRSIWNDIQGVTILWVSAEFRAARPPKTGEMAKIPHNAPALPPAFVERSGLVEAVAQDLAAAERATDTADVLRGIPGGGKTVAASSVVRCENVRRSFKDGIFWVQVGQVGTGNPTALLKGLAEDLAHAPSNRPRTVPHEFRDVEHVVSHLVGVLEQGNLRCLVVLDNVWDREMVPLFLRTGFRCLVTTRDVAMVPRHLWGTCTPVDMLTEAEALELLKKASRATSSIPRDEGLEVADDCGFLPLAIAIIGAMGSSRVNPHSPETWRGVHARLVEEPSLVQDHVGGALAVSFRELSEKARARFRKLGVLARGVRAPVDMVAHLWEQ 483          
BLAST of mRNA_P-littoralis_Contig94.130.10 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 473 bits (1218), Expect = 4.900e-143
Identity = 312/702 (44.44%), Postives = 404/702 (57.55%), Query Frame = 2
Query:  386 RAPYSGDSVQAGGAAEPTTEPHASLNSSFSSQTLEEVKRLLADRKPWPAFLHAGLASD-----CPENVGEALAWMASGAVGLLNVASVGPLVPVCEAFKGLIQAAEGAAEADEKLRELISWCAFLTEVLLQHGKELDDLAPVRNPLVAFVSTTNKLAKRAKTLAARGKCTALLCFWRDRKQIQEFDAKLRKIWEDIQ-----GHTMLDIGALIRRGLPPKTGEMAKVPQNARVLPPA-FVERSDLVEAVVHELVATDRATEKAHVLHGIPGGGKTVTASAVVRCEDVRRSFQDGIFWVQVGQVGTGNPLALLKGLAEDLAHAPSNRPHTVPHEFRDVNHVISHLVGVRKQSNLRCLIVLDDVWDPQMVPLFLRTGFHCLVTTRDLAVVPRRLRGTCTAVDMLTETEALELLKKASRA---PSSIPRDEGLKVADDCGFLPLAVAIIGAMGSLRADPLSPETWKGVHARL--VEEPTLVQDHVGGALAV----SFRELNENARTRFRKLGVLVRGVWAPVDMVAHLWE-QDLSDTILLMSDLVDKSLVKVVEQS-YYLHDLVLDFAKDELRKLKGKVQLVTSRQAQYLGTTSVLEDYA--RAGEVLRGFYALIALWQSVEDISGDKQLEVSTYSVKLKALEGSEPTAGVAFTNWAAGRLFHLQGKYAEAEPLFERVQTIQEKLRGPEHPDVATSLNNRAELLQ 2419
            RAP SG   QAG AA    EP        + + L+ V +LLA++KPWPAFLH G  +      CP  V EALAWM + AVG+L VASVGPLVPVCEAFK LI+AAEGAAE  +KL+ L+S CAFL  VL+QHG+ +  LA V+ P+  FV TTN+LA  A   A  GKC A  C   D   +  F+  LR+I  DI       H    + AL    LPP   +MA VP  A  LP + +VER+ + E  V + + T   +   + + G+ GGGK+V ASA VR   VR  F+ GIFWV+VG+    + LALL+GLA D+  AP++ PH VPH    +  V  HL  V        L+VLDDVW+ ++V  F+  GF  L+TTRD +VV     G     DM TE EALELL+K S     P    R +  KV   CG LPL +AI G+M  +R   L+   W+ +   L  V +    +     ++ V    SF  L    +  F K+ VL  G  AP++M+ +LWE +D   T      LV K L+  V    Y +HDLVL+FAK  +R  +  V+  T+ QAQYLG   VLE Y     G   +G + L ALW+SVE +SGD +LEV++Y   L  LE  E T  VA + W+ G LF++QGKYAEAEPL+ER   IQEK+ GPEHPDVATSL+NRA LL+
Sbjct:   46 RAPASGG--QAGLAAAAVVEP-------TTVERLDHVGKLLAEKKPWPAFLHIGARATEEWEACPTPVQEALAWMTTSAVGVLGVASVGPLVPVCEAFKALIEAAEGAAECQDKLQSLVSQCAFLATVLIQHGRAVGPLAQVQKPIQDFVVTTNELAGFAARWAKGGKCRAFCCHRPDLSALAGFEECLRRIGSDIALVDGLEHHQSFLAALPSL-LPPSLPDMAAVPTGALELPSSSYVERAAVQE--VADGLTTPEESRAPYTVVGMGGGGKSVLASAAVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAWDVGAAPTDAPHGVPHVLDRLEQVQQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGLPA-GRLELGDM-TEEEALELLRKTSGTVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGEQSSSMKVVLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWEVEDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLEGYGDPEHGAGGQGLFFLDALWRSVEKLSGDPELEVASYHNSLGELESCEATKAVARSYWSVGFLFNIQGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLLE 733          
BLAST of mRNA_P-littoralis_Contig94.130.10 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 461 bits (1185), Expect = 2.590e-136
Identity = 306/696 (43.97%), Postives = 400/696 (57.47%), Query Frame = 2
Query:  386 RAPYSGDSVQAGGAAEPTTEPHASLNSSFSSQTLEEVKRLLADRKPWPAFLHAGLASD-----CPENVGEALAWMASGAVGLLNVASVGPLVPVCEAFKGLIQAAEGAAEADEKLRELISWCAFLTEVLLQHGKELDDLAPVRNPLVAFVSTTNKLAKRAKTLAARGKCTALLCFWRDRKQIQEFDAKLRKIWEDIQ-----GHTMLDIGALIRRGLPPKTGEMAKVPQNARVLPPA-FVERSDLVEAVVHELVATDRATEKAHVLHGIPGGGKTVTASAVVRCEDVRRSFQDGIFWVQVGQVGTGNPLALLKGLAEDLAHAPSNRPHTVPHEFRDVNHVISHLVGVRKQSNLRCLIVLDDVWDPQMVPLFLRTGFHCLVTTRDLAVVPRRLRGTCTAVDMLTETEALELLKKASRA---PSSIPRDEGLKVADDCGFLPLAVAIIGAMGSLRADPLSPETWKGVHARL--VEEPTLVQDHVGGALAV----SFRELNENARTRFRKLGVLVRGVWAPVDMVAHLWE-QDLSDTILLMSDLVDKSLVKVVEQS-YYLHDLVLDFAKDELRKLKGKVQLVTSRQAQYLGTTSVLEDYA--RAGEVLRGFYALIALWQSVEDISGDKQLEVSTYSVKLKALEGSEPTAGVAFTNWAAGRLFHLQGKYAEAEPLFERVQTIQEKLRGPEHPDVATSLNN 2401
            RAP SGD  QAG AA    EP        + + L+ V +LLA++KPWPAFLH G  +      CP  V EALAWM + AVG+L VASVGPLVPVCEAFK LI+AAEGAAE  +KL+ L+S CAFL  VL+QHG+ +  LA V+ P+  FV+TTN+LA  A   A  GKC A  C   D   +  F+  LR+I  DI       H    + AL    LPP   +MA VP  A  LP + +VER+  V+ V   L A + +     V+ G+ GGGK+V ASAVVR   VR  F+ GIFWV+VG+    + LALL+GLA D+  AP++ P  VP     +  V  HL  V      + L+VLDDVW+ ++V  F+  GF  L+TTRD +VV   +      +  +TE EALELL+K S A   P    R +  KV   CG LPL +AI G+M  +R   L+   W+ +   L  V +    +     ++ V    SF  L    +  F K+ VL  G  AP++M+ +LWE +D   T      LV K L+  V    Y +HDLVL+FAK  +R  +  V+  T+ QAQYLG   VLE Y     G   +G + L ALW+SVE +SGD  LEV++Y   L+ LE  E T  VA +  + G LF++Q KYAEAEPL+ER + IQEK+ GPEHP VATSLNN
Sbjct:   29 RAPASGD--QAGLAAAAVVEP-------TTVERLDHVGKLLAEKKPWPAFLHIGARATEEWEACPTPVQEALAWMTTSAVGVLGVASVGPLVPVCEAFKALIEAAEGAAECQDKLQSLVSQCAFLATVLIQHGRAVGPLAQVQKPIQDFVATTNELAGFAARWAKGGKCRAFFCHRPDLSALAGFEECLRRIRSDIALVDGLEHHQSFLAALPSL-LPPSLPDMAAVPAGALELPSSSYVERA-AVQEVADGLTAPEESRAPYTVV-GMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLARDVGAAPTDAPCGVPRVLDSLEQVRQHLAAVTSTGTSQRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVG--VPAGRLELGDVTEEEALELLRKTSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGEQSSSMKVVLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWEIEDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLESYGDPEHGTGDQGLFFLDALWRSVEKLSGDPGLEVASYRASLEELESCEATEAVATSYGSVGFLFNIQSKYAEAEPLYERSRAIQEKVLGPEHPHVATSLNN 710          
BLAST of mRNA_P-littoralis_Contig94.130.10 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 432 bits (1111), Expect = 5.120e-134
Identity = 291/700 (41.57%), Postives = 381/700 (54.43%), Query Frame = 2
Query:  485 LEEVKRLLADRKPWPAFLHAGLASD-----CPENVGEALAWMASGAVGLLNVASVGPLVPVCEAFKGLIQAAEGAAEADEKLRELISWCAFLTEVLLQHGKELDDLAPVRNPLVAFVSTTNKLAKRAKTLAARGKCTALLCFWRDRKQIQEFDAKLRKIWEDIQ-----GHTMLDIGALIRRGLPPKTGEMAKVPQNARVLP-PAFVERSDLVEAVVHELVATDRATEKAHVLHGIPGGGKTVTASAVVRCEDVRRSFQDGIFWVQVGQVGTGNPLALLKGLAEDLAHAPSNRPHTVPHEFRDVNHVISHLVGVRKQSNLRCLIVLDDVWDPQMVPLFLRTGFHCLVTTRD--LAVVPRRLRGTCTAVDMLTETEALELLKKASRA---PSSIPRDEGLKVADDCGFLPLAVAIIGAMGSLRADPLSPETWKGVHARLVEEPTLVQ------DHVGGALAVSFRELNENARTRFRKLGVLVRGVW-----------------------------APVDMVAHLWE-QDLSDTILLMSDLVDKSLVKVVEQS-YYLHDLVLDFAKDELRKLKGKVQLVTSRQAQYLGTTSVLEDYA--RAGEVLRGFYALIALWQSVEDISGDKQLEVSTYSVKLKALEGSEPTAGVAFTNWAAGRLFHLQGKYAEAEPLFERVQTIQEKLRGPEHPDVATSLNNRAELLQ 2419
            LE V +LLA+++PWPAFLH    +      CP    EAL W+A+  VG+L+VASVGPLVPVCEAFK LI+AAEGAAE+  KL+ L+S CAFL  VL+QHG+ +  LA V  P+  FV TTN LA  A   A  GKC A  C   D   + +F+  LR+I  DI       H    + AL    LPP   +MA VP  A  LP  ++VER+ + E  V + + +       + + G+ GGGK+V ASAVVR   VR  F+ GIFWV+VG+    + LALL+GLA ++  A ++ PHTVPH    +  V  HL  V        L+VLDDVW+ ++V  F+  GF  L+TTRD  + VVP    G     DM TE EALELL+K+S A   P    R +  KV   CG LPL +AI G+M  ++   L+   WK +   L      ++        +   L  SF  L    +  F KL VL                                  AP++M+ +LWE +D   T      LV K L+  V    Y +HDLVL++AK  +R     V+ VT+ QA +LG   VL+ Y     G   +  + L ALW+SVE +SGD +LEV        ALE  E T  VA + W+ G LF++QGKYAEAEPL+ER Q IQE + GPEHPDV TSLNNRA LL+
Sbjct:   16 LERVGKLLAEKRPWPAFLHIEARATEEWEACPTVAQEALTWIATATVGVLDVASVGPLVPVCEAFKALIEAAEGAAESQHKLQSLVSQCAFLATVLIQHGRAVGPLAQVHKPIEDFVVTTNDLAGFAARWANGGKCRAFFCHRPDLSALADFEECLRRIRSDIALVDGLEHHQSFLAALPSL-LPPSLPDMAAVPAGALELPCSSYVERAAVQE--VADGLTSPEDPRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAARTDAPHTVPHVLDGLEQVKQHLAAVASTGTFPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVVVPA---GRLEVGDM-TEEEALELLRKSSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVKGKGLTAVAWKELAENLENVAKKMRARGEQSSSINAVLETSFDSLAVRKQEEFLKLAVLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAPIEMLRNLWEIEDAEGTRDEAEGLVSKCLLHAVGGGGYRVHDLVLEYAKTRIRADAEMVRKVTALQAHFLGRLDVLKSYRDPEHGAGNQSLFFLDALWRSVEKLSGDPELEV--------ALESCEATEAVARSYWSVGFLFNIQGKYAEAEPLYERSQAIQENVLGPEHPDVGTSLNNRALLLE 700          
BLAST of mRNA_P-littoralis_Contig94.130.10 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 429 bits (1104), Expect = 1.230e-127
Identity = 273/672 (40.62%), Postives = 366/672 (54.46%), Query Frame = 2
Query:  485 LEEVKRLLADRKPWPAFLHAGLAS-----DCPENVGEALAWMASGAVGLLNVASVGPLVPVCEAFKGLIQAAEGAAEADEKLRELISWCAFLTEVLLQHGKELDDLAPVRNPLVAFVSTTNKLAKRAKTLAARGKCTALLCFWRDRKQIQEFDAKLRKIWEDIQGHTMLDIGALI----RRGLPPKTGEMAKVPQNARVLPPAFVERSDLVEAVVHELVATDRATEKAHVLHGIPGGGKTVTASAVVRCEDVRRSFQDGIFWVQVGQVGTGNPLALLKGLAEDLAHAPSNRPHTVPHEFRDVNHVISHLVGVRKQSNLRCLIVLDDVWDPQMVPLFLRTGFHCLVTTRDLAVVPRRLRGTCTAVDMLTETEALELLKKASRAPSSIPRDEGLKVADDCGFLPLAVAIIGAMGSLRADPLSPETWKGVHARLVEEPTLVQDHVGG------------------ALAVSFRELNENARTRFRKLGVLVRGVWAPVDMVAHLWEQDLSDTILLMSDLVDKSLVKVVEQSYYLHDLVLDFAKDELRKLKGKVQLVTSRQAQYLGTTSVLEDYARAGEVLRGFYALIALWQSVEDISGDKQLEVSTYSVKLKALEGSEPTAGVAFTNWAAGRLFHLQGKYAEAEPLFERVQTIQEKLRGPEHPDVATSLNNRAELLQ 2419
            LEEV+ LLA++KPWPAFL A + +     DCPE   +AL WMAS AVGLL++ASVGPL+PVC+AF  LI+AA+GA E  E LREL++WCAFL  V ++HGK++D+L  +  PL   VSTT +LAKRAK +A RGKCTAL C  +D K I  FDAKLR++W DI+G  +LDI  ++     R  P     MA VP  A  LPP+ V+R  L   +V+ L ATD +                                  GI W++VG+VG     AL + L      A       +P  F     +I +L  +  +  L  L+VLDDVW+  +V     TG   LVTTR  +VV   +RG  T V  +   EA ELLK  S A  ++P+ E  +VA  CG+  L +AI G++  ++ DP S  TW+    RL  E T  ++ V G                   L +S   L  +    F  L VL RGV AP  M+A +W++D           V  SL++ V+ S+ LHDL+LDF +    K    +     RQ+QYLG  +VL+DY   G+ L GFY+LI LW+ + ++ G KQLEV  Y   L  L G + + G +    A GRL  L+G +AEA+P   R   I EK+ GPEHPD+A  LNNRAELL+
Sbjct:   62 LEEVETLLANKKPWPAFLRAAVETRGEWDDCPEGATDALEWMASTAVGLLDIASVGPLIPVCKAFTALIEAAQGATEVVENLRELVTWCAFLVGVFIEHGKQVDNLQKIAKPLNELVSTTGELAKRAKVVAGRGKCTALFCHKKDAKTIASFDAKLRRLWTDIRGLAILDIQQIVIRLEERSRPVPVPGMADVPAAALKLPPSHVKRVGLEAEIVNSLTATDAS----------------------------------GISWLRVGRVGEDQLQALFEALTRGAFPAAK-----LPPRFNSPEEIIQYLTVLVAEDKLPRLVVLDDVWERAVVDTLRPTGLRLLVTTRLDSVVA--MRGGRTTVGNMDGGEARELLKSRSGA-IALPKTEADQVAAACGWHALTLAIAGSLRFVKDDPNSASTWR----RLASEMTQTKNSVRGPKMDADIGDDPTKKSLFPVLELSLESLGGDRERLFLSLLVLARGVSAPAPMLASIWDKDDMGARNEADFFVSNSLLQEVDSSFRLHDLLLDFVRTRCEK--KIIDEAVKRQSQYLGRLAVLQDYEAKGDSLEGFYSLIVLWRKLAELCG-KQLEVEVYHASLGKL-GDDVSTGASDAFSAVGRLHELEGNFAEADPFNLRAIEIGEKVLGPEHPDLAVWLNNRAELLR 683          
BLAST of mRNA_P-littoralis_Contig94.130.10 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 436 bits (1122), Expect = 6.850e-126
Identity = 282/674 (41.84%), Postives = 383/674 (56.82%), Query Frame = 2
Query:  479 QTLEEVKRLLADRKPWPAFLHAGLASD-----CPENVGEALAWMASGAVGLLNVASVGPLVPVCEAFKGLIQAAEGAAEADEKLRELISWCAFLTEVLLQHGKELDDLAPVRNPLVAFVSTTNKLAKRAKTLAARGKCTALLCFWRDRKQIQEFDAKLRKIWEDIQGHTMLDIGALIRRGLP----PKTGEMAKVPQNARVLPPAFVERSDLVEAVVHELVATDRATEKAHVLHGIPGGGKTVTASAVVRCEDVRRSFQDGIFWVQVGQVGTGNPLALLKGLAEDLAHAPSNRPHTVPHEFRDVNHVISHLVGVRKQSNLRC-LIVLDDVWDPQMVPLFLRTGFHCLVTTRD--LAVVPRRLRGTCTAVDM--LTETEALELLKKASRA---PSSIPRDEGLKVADDCGFLPLAVAIIGAMGSLRADPLSPETWKGVH------ARLVEEPTLVQDHVGGALAVSFRELNENARTRFRKLGVLVRGVWAPVDMVAHLWE-QDLSDTILLMSDLVDKSLVKVV-EQSYYLHDLVLDFAKDELRKLKGKVQLVTSRQAQYLGTTSVLEDYA--RAGEVLRGFYALIALWQSVEDISGDKQLEVSTYSVKLKALEGSEPTAGVAFTNWAAGRLFHLQGKYAEAEPLFERVQTIQEKLRGPEHPDVATSLNNRAELLQ 2419
            + LE V +LLA+++PWPAFLH G  +      CP    EAL WM + AVG+L+VASVGPLVPVC+A K LI+AAEGAAE ++K++ L+S CAFL  VL+QHG+ +  LA V  P+  FV TTN+LA  A   A  GKC A  C   D   +  F+  LR I  DI     L+   L    LP    P+  +MA VP  A  LP  +VER+  V+ V   L A +       V+ G+ GGGK+V ASAVVR   VR  F+ GI WV+VG+    + L LL+GLA ++  AP++ PH VP     +  V  HL  V   +     L+VLDDVW+ ++V   +  GF  L+TTRD  + VVP R       +D+  +TE EALELL+K S     P    R +  KV   CG LPL +AI G+M +++   L+   W+ +       A+ +         +   L  SF  L    +  F ++ VL  G  AP++M+ +LWE +D   T      LV+K L+  V +  Y +HD+VL+FAK  +R  +  V+  T+ QAQ+LG   VL+ Y     G   RG + L +LW+SVE +SGD +LEV+TY   L+ LE  + T  +A +  A G LF  Q KY EAEPL ER Q +QEK+ GPEHP VA SLNNRA+LL+
Sbjct:   26 ERLEHVGKLLAEKRPWPAFLHIGARATEEWEACPTLAQEALTWMTTAAVGVLDVASVGPLVPVCQALKALIEAAEGAAECEDKVQSLVSQCAFLATVLIQHGRAVGALAQVHKPIQDFVVTTNELAGFAARWAKDGKCRAFFCHRPDLSALAGFEECLRGIRSDIALVDGLEQHQLFLAALPSLRPPRLLDMAAVPAGALDLPRGYVERA-AVQEVADGLTAPEEPRAPYTVV-GLGGGGKSVLASAVVRKPSVREHFRGGISWVRVGRGAKNSLLPLLQGLAREMGVAPTDAPHAVPQVLDSLEQVQQHLAAVVASTGTSPRLVVLDDVWEREVVDALVPLGFKVLLTTRDWSVVVVPAR------RLDLGDMTEEEALELLRKTSGTVGQPGDYVRMKMTKVVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKSFENVAKKMRARGQQSSAIKVVLETSFDSLAVQKQEEFLRMSVLAAGALAPIEMLRNLWEIEDAEGTRDEAEGLVNKCLLHAVGDGGYRVHDMVLEFAKTSIRADEETVEKATALQAQFLGRLDVLKSYRDPEHGAGDRGLFFLDSLWRSVEKLSGDPELEVTTYRASLRELESCKATEDMASSYSAVGFLFDAQRKYIEAEPLHERAQAMQEKVLGPEHPGVAQSLNNRADLLR 691          
BLAST of mRNA_P-littoralis_Contig94.130.10 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 373 bits (957), Expect = 1.450e-105
Identity = 269/700 (38.43%), Postives = 360/700 (51.43%), Query Frame = 2
Query:  386 RAPYSGDSVQAGGAAEPTTEPHASLNSSFSSQTLEEVKRLLADRKPWPAFLHAGLASD-----CPENVGEALAWMASGAVGLLNVASVGPLVPVCEAFKGLIQAAEGAAEADEKLRELISWCAFLTEVLLQHGKELDDLAPVRNPLVAFVSTTNKLAKRAKTLAARGKCTALLCFWRDRKQIQEFDAKLRKIWEDI------QGHTMLDIGALIRRGLPPKTGEMAKVPQNARVLPPAFVERSDLVEAVVHELVATDRATEKAHVLHGIPGGGKTVTASAVVRCEDVRRSFQDGIFWVQVGQVGTGNPLALLKGLAEDLAHAPSNRPHTVPHEFRDVNHVISHLVGVRKQSNLRCLIVLDDVWDPQMVPLFLRTGFHCLVTTRDLAVVPRRLRGTCTAVDMLTETEALELLKKASRAPSSIPRDEGLKVADDCGFLPLAVAIIGAMGSLRADPLSPETWKGVHARL---------VEEPTLVQDHVGGALAVSFRELNENARTRFRKL--GVLVRGVWAPVDMVAHLWEQDLSDTILLMSDLVDKSLVKVVEQSYYLHDLVLDFAKDELRKLKGKVQLVTSRQAQYLGTTSVLEDYARAGEVLRGFYALIALWQSVEDISGDKQLEVSTYSVKLKALEGSEPTAGVAFTNWA-AGRLFHLQGKYAEAEPLFERVQTIQEKLRGPEHPDVATSLNNRAELL 2416
            RAP SG       A EPT           +++ L+ V +LLA++KPWPAFLH G  +      CP  V EAL WMA   VG+L++ASVGPL PVC+AFKGLI+AAEGAAE+ +KL+ LIS CAFLT VL+QH + +  LA V+ P+  FV+TTN LA  A T A  GKC AL C   DR  + +F+  LR I  DI      + H +L   A+ R+  PP    MA VP     L    + R  L+   +  L  T    +   VL G+ G GK+V ASAVVR E VR  F  G+FWV+          A L+G A  +A        T       V  V  +L  V   S    L+VLDDVW+ ++V     TG   LVTTRD +VV   + G C  V  + E EALE+L+    A  ++              LP A A+ G        P  P++W+ +H  L          +    V   V   L VS   + ++   + R L   VL  G  AP DM+  LW++    T    + LVD+S+++    ++ +HDLVL F K +L+    +  + TSR A+YLG   VL  Y   GE   G YAL+ALW+SVED+ G+ ++  + Y   L+ +    P        W  AGR+  L GKYAEA+PL+ R   I E   GP+HP +AT LNNRA LL
Sbjct:    3 RAPTSGGQAGLVAAVEPT-----------AAERLDHVGKLLAEKKPWPAFLHIGARATEEWEACPTPVQEALVWMARATVGVLDIASVGPLEPVCQAFKGLIEAAEGAAESQDKLKGLISRCAFLTTVLIQHDRAVGPLAQVQKPMKDFVATTNDLAAFAATWAKGGKCRALFCHRSDRSTLTDFEEGLRTISNDIALVDGLEHHQLLL--AVYRQLRPPTLPAMASVPAGPISLTDGHISRPSLLGRAIGYLTNT-AVGDAPCVLTGMAGAGKSVLASAVVRDEKVREHFHAGMFWVRARDA-KDQLHACLEGFALRVASTSG----TTSPGLGSVEEVTRYLKAVCADSVSPRLVVLDDVWEREIVDALKLTGLQLLVTTRDRSVVS--MPGECVEVGDMEEDEALEVLRVGCGASKNLE-------------LPRAEALQGP-------PQDPKSWRTLHEALSKAMSTRLGTDRIMAVPKRVDAVLEVSLGAMADDPAKQQRCLFLAVLAPGTLAPSDMLEDLWDEAPGATKTFAAQLVDQSMLQPAGDAFRVHDLVLLFLKPKLKADPNR-PIATSRFAEYLGQLKVLRRYLGDGETSDGVYALMALWRSVEDLVGESRV-AAVYMNNLQGVPEHAP--------WRQAGRVLELMGKYAEADPLYLRAIEIGENTLGPDHPALATQLNNRAGLL 651          
BLAST of mRNA_P-littoralis_Contig94.130.10 vs. uniprot
Match: A0A6H5J6Q8_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Q8_9PHAE)

HSP 1 Score: 345 bits (885), Expect = 1.770e-101
Identity = 260/697 (37.30%), Postives = 359/697 (51.51%), Query Frame = 2
Query:  377 MEARAPYSGDSVQAGGAAEPTTEPHASLNSSFSSQTLEEVKRLLADRKPWPAFLHAGLA-----SDCPENVGEALAWMASGAVGLLNVASVGPLVPVCEAFKGLIQAAEGAAEADEKLRELISWCAFLTEVLLQHGKELDDLAPVRNPLVAFVSTTNKLAKRAKTLAARGKCTALLCFWRDRKQIQEFDAKLRKIWEDIQGHTMLDIGALIRRGLPPKTGEMAKVPQNARVLPPAFVERSDLVEAVVHELVATDRATEKAHVLHGIPGGGKTVTASAVVRCEDVRRSFQDGIFWVQVGQVGTGNPLALLKGLAEDLAHAPSNRPHTVPHEFRDVNHVISHLVGVRKQSNLRCLIVLDDVWDPQMVPLFLRTGFHCLVTTRDLAVVPRRLRGTCTAVDMLTETEALELLKKASRAPSSIPRDEGLKVADDCGFLPLAVAIIGAMGSLRADPLSPETWKGVHARLVEEPTLVQDHVGGALAVSFRELNENA---RTRFRKLGVLVRGVWAPVDMVAHLWEQDLSDTILLMSDLVDKSLVKVVEQSYYLHDLVLDFAKDELRKLKGKVQLVTSRQAQYLGTTSVLEDYARAGEVLRGFYALIALWQSVEDISGDKQLEVSTYSVKLKALEGSEPTAGVAFTNWAAGRLFHL--------QGKYAEAEPLFERVQTIQEKLRGPEHPDVATSLNNRAELLQ 2419
            M ARAP    SVQAG AA PTT            + LEEV+ LLA +KPWPAFL AG+       +CPE   +AL WMAS AVGLL++ASVGPL PVC+AF  LI+AA+GA E  + LREL++WCAFL  VL++HGK++++L  V  PL  FV+TT +LAKRA  +A RGK                                      +  R  P    +MA VP  A  LPP+ V+R  L   ++  L  TD A+   +VL G+ G GK++ AS+VVR E+VR+ F+ G FW++VG  G     AL   LA  +  A       +P +F  +  +I HL  V  +  L  L+VLDDV +  +V     TG   LVTTR  ++V   +RG  T V  +   EA ELLK  S A   +P  E  +     G  P   A IG       D  + E+   V    ++     Q  +  +L V  R ++  A    + +  +G+ V      ++ V ++  ++ +D        V  SL++ V+ S+ +HDL+LDFA+    K    +     RQ+QYL   +VL+DY   G+ L G Y+LI LW+ + +  G++Q+EV  Y   L  L G + +AG A    A GRL  L        QGK  EA PL++R   I E   GPEH  VAT+LNNRA LL+
Sbjct:    1 MAARAPSDVSSVQAGAAAAPTTP-----------ERLEEVETLLAYKKPWPAFLCAGVDVHGEWDNCPEGARDALEWMASTAVGLLDIASVGPLTPVCKAFTALIEAAQGAMEVVKNLRELVTWCAFLVGVLIEHGKQVENLKAVNKPLNEFVATTGELAKRANVVAGRGK--------------------------------------MEERSRPLPLPDMADVPAAALKLPPSHVKRVGLEAEILKSLTTTD-ASGAPYVLLGVGGAGKSLLASSVVRTEEVRKHFRAGAFWLRVGPGGEDQLFALCDILARKVTPATK-----LPQQFNSLEDIIQHLTVVVAEDRLPRLMVLDDVLERAVVDTLRPTGLRLLVTTRLDSLVA--VRGGRTVVGNMDRAEARELLKSKSGA-IELPETEADQTKTILG--PQMDADIG-------DNPTKESLFHVLDLSLKYLGRHQHRLFLSLVVLARGVSAPAPMLASIWDMVGLCVIKCATSLEKVDNMGARNEADFF------VSNSLLQEVDGSFRVHDLLLDFARTRCEK--EILDEAVKRQSQYLRRLAVLQDYRAKGDPLEGLYSLIVLWRKLAEHCGNEQVEVEAYHASLGEL-GDDESAGAADAFSAVGRLLGLETHLYVSFQGKLDEAGPLYDRAIRIWEAALGPEHSQVATALNNRARLLR 621          
BLAST of mRNA_P-littoralis_Contig94.130.10 vs. uniprot
Match: A0A6H5KK53_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK53_9PHAE)

HSP 1 Score: 323 bits (828), Expect = 9.110e-97
Identity = 201/430 (46.74%), Postives = 260/430 (60.47%), Query Frame = 2
Query:  377 MEARAPYSGDSVQAGGAAEPTTEPHASLNSSFSSQTLEEVKRLLADRKPWPAFLHAGLA-----SDCPENVGEALAWMASGAVGLLNVASVGPLVPVCEAFKGLIQAAEGAAEADEKLRELISWCAFLTEVLLQHGKELDDLAPVRNPLVAFVSTTNKLAKRAKTLAARGKCTALLCFWRDRKQIQEFDAKLRKIWEDIQGHTMLDIGALI----RRGLPPKTGEMAKVPQNARVLPPAFVERSDLVEAVVHELVATDRATEKAHVLHGIPGGGKTVTASAVVRCEDVRRSFQDGIFWVQVGQVGTGNPLALLKGLAEDLAHAPSNRPHTVPHEFRDVNHVISHLVGVRKQSNLRCLIVLDDVWDPQMVPLFLRTGFHCLVTTRDLAVVPRRLRGTCTAVDMLTETEALELLKKASRAPSSIPRDEGLKV 1639
            M ARAP SG SVQAG AA PTT            + LEEV+ LLA +KPWPAFL AG+       +CPE   +AL WMAS AVGLL+VASVGPL PVC+AF  LI+AA+GA E  E LREL++WCAFL  VL++HGK++D+L  V  PL  FV+TT +LAKRA  +A R KC A LC  +D K +  FD KLR+ W DIQG  +LDI  ++     R  P    +MA VP  A  LPP+ V+R  L   ++  L ATD A+   +VL G+ G GK++ AS+VVR E+VR+ F+ G FW++VG  G     AL +GLA  LA   +     +P  F  +  +I HL  +  +  L  L+VLDDVW+  +V +   TG   LVTTR  +VV   +RG  T V  +   EA ELLK  S A  ++P  E  +V
Sbjct:    1 MAARAPSSGSSVQAGAAAAPTTP-----------ERLEEVETLLAYKKPWPAFLCAGVDVHGEWDNCPEGARDALEWMASTAVGLLDVASVGPLTPVCQAFTALIEAAQGAMEVVENLRELVTWCAFLVGVLIEHGKQVDNLKAVNKPLNEFVATTGELAKRANVVAGRSKCMAFLCHKKDAKMMASFDDKLRRFWTDIQGLAVLDIQEIVTRMEERSRPLPLPDMADVPAAALKLPPSHVKRVGLEAEILKSLTATD-ASGAPYVLLGMGGAGKSLLASSVVRTEEVRKHFRAGAFWLRVGPGGEDQLQALFEGLAR-LAIPEAK----LPQRFNSLEEIIQHLTVLVAEDKLPRLVVLDDVWERAVVDILRPTGLRLLVTTRLDSVVA--VRGGRTVVGNMATGEARELLKSKSGA-ITLPETEADQV 410          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig94.130.10 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL58_ECTSI1.040e-31167.10NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5L982_9PHAE2.680e-26380.21NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G722_ECTSI4.900e-14344.44NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G720_ECTSI2.590e-13643.97NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KXS7_9PHAE5.120e-13441.57NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JJK0_9PHAE1.230e-12740.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGG5_ECTSI6.850e-12641.84NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G6W2_ECTSI1.450e-10538.43NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5J6Q8_9PHAE1.770e-10137.30NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KK53_9PHAE9.110e-9746.74NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig94contigP-littoralis_Contig94:580981..586295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LL58
PFAMsNB-ARC,TPR_10,TPR_12,TPR_16,TPR_4,TPR_7,TPR_8
Model size3307
Max annot lvl2759|Eukaryota
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons12
Evalue2.29e-314
EggNOG OGsCOG0457@1|root,KOG4658@1|root,KOG1840@2759|Eukaryota,KOG4658@2759|Eukaryota
DescriptionADP binding
Cds size2931
COG categoryS
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig94.130.10prot_P-littoralis_Contig94.130.10Pylaiella littoralis U1_48polypeptideP-littoralis_Contig94 580981..585919 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791855.4056745-CDS-P-littoralis_Contig94:580980..5812321680791855.4056745-CDS-P-littoralis_Contig94:580980..581232Pylaiella littoralis U1_48CDSP-littoralis_Contig94 580981..581232 -
1680791855.421201-CDS-P-littoralis_Contig94:581369..5814951680791855.421201-CDS-P-littoralis_Contig94:581369..581495Pylaiella littoralis U1_48CDSP-littoralis_Contig94 581370..581495 -
1680791855.4338634-CDS-P-littoralis_Contig94:581785..5819111680791855.4338634-CDS-P-littoralis_Contig94:581785..581911Pylaiella littoralis U1_48CDSP-littoralis_Contig94 581786..581911 -
1680791855.445805-CDS-P-littoralis_Contig94:582226..5823521680791855.445805-CDS-P-littoralis_Contig94:582226..582352Pylaiella littoralis U1_48CDSP-littoralis_Contig94 582227..582352 -
1680791855.456296-CDS-P-littoralis_Contig94:582642..5827681680791855.456296-CDS-P-littoralis_Contig94:582642..582768Pylaiella littoralis U1_48CDSP-littoralis_Contig94 582643..582768 -
1680791855.4676034-CDS-P-littoralis_Contig94:582962..5829791680791855.4676034-CDS-P-littoralis_Contig94:582962..582979Pylaiella littoralis U1_48CDSP-littoralis_Contig94 582963..582979 -
1680791855.4815452-CDS-P-littoralis_Contig94:583046..5831551680791855.4815452-CDS-P-littoralis_Contig94:583046..583155Pylaiella littoralis U1_48CDSP-littoralis_Contig94 583047..583155 -
1680791855.4914584-CDS-P-littoralis_Contig94:583325..5834511680791855.4914584-CDS-P-littoralis_Contig94:583325..583451Pylaiella littoralis U1_48CDSP-littoralis_Contig94 583326..583451 -
1680791855.5061972-CDS-P-littoralis_Contig94:583660..5840501680791855.5061972-CDS-P-littoralis_Contig94:583660..584050Pylaiella littoralis U1_48CDSP-littoralis_Contig94 583661..584050 -
1680791855.5195665-CDS-P-littoralis_Contig94:584152..5844251680791855.5195665-CDS-P-littoralis_Contig94:584152..584425Pylaiella littoralis U1_48CDSP-littoralis_Contig94 584153..584425 -
1680791855.536425-CDS-P-littoralis_Contig94:584579..5857701680791855.536425-CDS-P-littoralis_Contig94:584579..585770Pylaiella littoralis U1_48CDSP-littoralis_Contig94 584580..585770 -
1680791855.553045-CDS-P-littoralis_Contig94:585850..5859191680791855.553045-CDS-P-littoralis_Contig94:585850..585919Pylaiella littoralis U1_48CDSP-littoralis_Contig94 585851..585919 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791855.5639846-UTR-P-littoralis_Contig94:585919..5862951680791855.5639846-UTR-P-littoralis_Contig94:585919..586295Pylaiella littoralis U1_48UTRP-littoralis_Contig94 585920..586295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig94.130.10

>prot_P-littoralis_Contig94.130.10 ID=prot_P-littoralis_Contig94.130.10|Name=mRNA_P-littoralis_Contig94.130.10|organism=Pylaiella littoralis U1_48|type=polypeptide|length=977bp
MEARAPYSGDSVQAGGAAEPTTEPHASLNSSFSSQTLEEVKRLLADRKPW
PAFLHAGLASDCPENVGEALAWMASGAVGLLNVASVGPLVPVCEAFKGLI
QAAEGAAEADEKLRELISWCAFLTEVLLQHGKELDDLAPVRNPLVAFVST
TNKLAKRAKTLAARGKCTALLCFWRDRKQIQEFDAKLRKIWEDIQGHTML
DIGALIRRGLPPKTGEMAKVPQNARVLPPAFVERSDLVEAVVHELVATDR
ATEKAHVLHGIPGGGKTVTASAVVRCEDVRRSFQDGIFWVQVGQVGTGNP
LALLKGLAEDLAHAPSNRPHTVPHEFRDVNHVISHLVGVRKQSNLRCLIV
LDDVWDPQMVPLFLRTGFHCLVTTRDLAVVPRRLRGTCTAVDMLTETEAL
ELLKKASRAPSSIPRDEGLKVADDCGFLPLAVAIIGAMGSLRADPLSPET
WKGVHARLVEEPTLVQDHVGGALAVSFRELNENARTRFRKLGVLVRGVWA
PVDMVAHLWEQDLSDTILLMSDLVDKSLVKVVEQSYYLHDLVLDFAKDEL
RKLKGKVQLVTSRQAQYLGTTSVLEDYARAGEVLRGFYALIALWQSVEDI
SGDKQLEVSTYSVKLKALEGSEPTAGVAFTNWAAGRLFHLQGKYAEAEPL
FERVQTIQEKLRGPEHPDVATSLNNRAELLQAQGKYSEADPLYKRAAAIN
EAVLGPEHPRVATDLNKRSLLLSMQGKYAEAEPLYERSQAIREKVLGLDH
PDVAQSLNNRAGLLRVQGKYAEAEPLYKRSLAIDEKVYGPDHPEVATDLN
NWAGLLKKQGKYVEAEPLYERSQAIREKVLGPEHPDVAASLNNRASLLES
QGKYAEAEPLYKRSLAIDEKVYGPDHPEVATDLNNWAGLLKKQNILVVVM
LLHASTRKCSSAVLDPTYTKIDPATLSTTFQGKYAEAEPLYKRSLAIDEK
VYGPDHPEVATDLNNWAGLLESQVRAA
back to top

mRNA from alignment at P-littoralis_Contig94:580981..586295-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig94.130.10 ID=mRNA_P-littoralis_Contig94.130.10|Name=mRNA_P-littoralis_Contig94.130.10|organism=Pylaiella littoralis U1_48|type=mRNA|length=5315bp|location=Sequence derived from alignment at P-littoralis_Contig94:580981..586295- (Pylaiella littoralis U1_48)
TTGTCGAGAAAACCCTGGTGACAAAACTCGGTCGCGTGTGATTGATGCCG ACGTGGGTATGACGTGTGCAGACCGGCACCTTTAAGATACAAGGAAAACT TTTTTGTGGCGATGTGCTTGTAAAAATTATGTCCATCAACATCGAAACCC TTTGTTTTTGCGATTCGGCCTCGTGGCCACGCTCCTTCGCGCAGCAACAG CAGCCAGTAACCAACAGTGTGTGTAGTGTCTACAGCAGTCACGTGACGCG ACCCAATTACGAGGGCGAGGCGTTGTACACCTGTCCCCACAGGAGACGGA ATTCGGAGCCGTTGACGAATCCCACTGCTCTGAGACTGCTTCTGTGGAGG GAAGTAACCGCTGGCCCACCGAGACCATGGAAGCGCGAGCTCCCTACAGC GGTGACAGCGTTCAAGCGGGGGGAGCTGCGGAGCCCACGACGGAGGTGAG GATTTTTTGCTCGTGGCTCCTGTTTTGACCTACCAATGGTTTTGAGCACG ATCTTCTCGCCGTGAATGTGCAAAGCCTCACGCTTCTTTGAACTCCTCTT TTTCTTCGCAGACTCTTGAGGAGGTCAAGCGGCTTCTCGCGGACAGGAAG CCATGGCCTGCGTTTCTTCACGCCGGGTTGGCAAGCGATTGCCCGGAAAA TGTGGGGGAAGCATTGGCGTGGATGGCATCAGGAGCGGTAGGGCTCTTGA ATGTCGCGAGTGTGGGGCCGCTCGTGCCCGTCTGCGAGGCCTTCAAGGGG CTGATCCAGGCGGCGGAGGGGGCGGCGGAGGCAGACGAGAAGCTGAGGGA ACTGATCAGCTGGTGCGCCTTCCTTACTGAAGTCTTGCTCCAGCACGGGA AGGAGTTGGACGATCTCGCGCCCGTTAGGAATCCCCTGGTTGCCTTTGTT TCCACCACAAACAAACTGGCGAAGCGTGCGAAAACGTTGGCGGCGAGAGG GAAGTGCACGGCATTGCTCTGCTTTTGGAGGGACCGAAAACAGATCCAAG AATTCGACGCGAAGCTCCGCAAAATTTGGGAAGACATTCAAGGGCACACT ATGTTAGATATTGGCGCTCTGATCCGACGTGGACTTCCACCCAAAACGGG CGAGATGGCCAAGGTACCCCAGAACGCTCGAGTCCTACCGCCGGCGTTTG TTGAACGGAGCGACCTTGTCGAAGCTGTTGTGCATGAACTCGTGGCGACG GACCGGGCGACCGAAAAAGCTCACGTGCTCCATGGCATACCCGGGGGGGG CAAGACCGTCACCGCCAGTGCAGTCGTGCGCTGCGAGGACGTGCGCCGAA GCTTCCAGGACGGGATCTTCTGGGTGCAAGTAGGACAAGTTGGCACGGGC AATCCATTGGCCCTGCTGAAGGGCTTGGCGGAAGATCTTGCGCATGCGCC CTCCAATCGGCCACACACGGTCCCGCACGAATTCAGGGACGTCAATCACG TGATCAGTCATCTTGTGGGCGTTCGCAAGCAGAGCAACCTACGCTGCCTG ATCGTGCTGGATGATGTATGGGACCCTCAGATGGTTCCGTTGTTCCTGCG TACAGGGTTTCATTGCTTGGTGACTACGCGCGATCTAGCAGTGGTCCCCC GCCGCCTGCGGGGAACGTGCACGGCGGTGGATATGCTGACGGAAACCGAG GCGCTGGAACTCCTCAAGAAAGCGAGCCGGGCTCCTTCAAGTATTCCGAG GGACGAGGGCCTGAAGGTGATGTTTCTCTTGAAATGCCTGCCAAGACGTC CATGGGTACACTACTCTGTATTTCTTCACTGAATAGCAGTTCAAAGACTT CCGGGTCGAGACCCTCGGACCGCCTGTTGCAACGGCTTATTCGTTTTCTG CAATGTACTTCCCCCGACAGGTTGCCGATGACTGCGGCTTTCTCCCGCTT GCCGTCGCCATCATCGGTGCCATGGGTAGCTTGCGAGCAGACCCACTTTC CCCCGAAACATGGAAGGGTGTCCACGCGCGGCTAGTCGAAGAACCAACTC TGGTGCAAGACCATGTTGGAGGTGCCCTCGCCGTCAGCTTTCGTGAGCTC AACGAGAACGCCAGGACGCGGTTTCGCAAGCTTGGTGTGCTGGTGCGGGG GGTGTGGGCCCCAGTCGACATGGTGGCTCATCTCTGGGAACAGGTACGTG CACGGTATGCGGGCTGTGGGCCCAAAAATTCTGATGTGTTTCTTCCCGTG TTTGGTTGACTTTGGTCATCGGTTTTGTTGCTAAAATATACACAGGACCT TAGTGACACCATACTTTTGATGAGCGACCTGGTGGACAAGTCCCTCGTGA AGGTCGTGGAGCAGAGCTACTACCTGCACGACCTGGTGCTGGACTTTGCG AAAGACGAGCTCAGGAAGTTGAAAGGAAAGGTGCAGCTTGTCACGTCTCG GCAAGCCCAGTACCTGGGCACGACATCCGTGCTCGAGGACTACGCACGGG CTGGCGAGGTGCTACGGGGGTTCTACGCCCTCATAGCTCTGTGGCAGTCA GTGGAGGATATATCTGGTGACAAGCAGCTGGAGGTAAGCACGTACAGCGT CAAGCTGAAAGCTTTGGAGGGGAGCGAACCGACAGCAGGTGTGGCCTTTA CCAACTGGGCTGCGGGGAGATTGTTCCACCTCCAGGTGGGCTTTCAGTGT GCTTGTGTGATCGTACCGAACCAGAGAGGCAAGCTCAGGTCTTGCCTGAA GCATTGTCAGGAAATTAGGGTTGTTGGGGGATCAGGCGAGAGTCAAACAT TGTCCTGGAAATTTTGTAGGGTGTACATGATCGGTTGTATGTTCCTCATG TCTGTGGACCACTGCTTTACACCAACCCACTGCGTGAATAACAGGGCAAG TATGCTGAGGCCGAGCCCCTCTTCGAGCGGGTACAGACCATACAAGAGAA GCTGCGGGGTCCGGAGCATCCGGATGTGGCGACGTCGCTCAACAACCGGG CGGAGTTGTTGCAGGCGCAGGTGAGAACCGTAAGAAAATTCCGAGAAGTT TCTTGTGGTACCCGATAGATTTCGGGAGTGCTCAACAACAGGGCGGGGTT GTTGAGAAATGTCCGCTGCAGTTCTAGATCAGACCTGAACTGAAAATTGA CTTTCGCACGCTCCTATCGGGTTCCCCCCCTCCACTTCAGGGCAAGTATT CTGAGGCGGACCCTCTGTACAAACGAGCTGCTGCGATCAACGAGGCCGTT CTTGGTCCAGAACACCCAAGAGTGGCTACAGATCTCAACAAGCGGAGTTG TTGAGAGTGCAGGTGAGAGCCGTCAGAAATTTCTAGGAAATTTTTAGTGG TGGGATGTGACCACAGTGTTGCTGAGCATGCAGGTGAGAGCCCATATAAT TTTCTGGGAACGTTATTGCGGACAGAGAGGGTGGACGGAAAATTCGAAGA ATATTCTTGTGGTCGGCACGTCTTTGCTCAACAAGGGCGCGGTTGATGAC AAAGTGTTCCTCCGTTGTTGTAGAATCAAGTTTTTACTAAAGTGTAACTT TGCCACGCTATCAACCACTGCATCCAGGGCAAGTACGCCGAAGCTGAGCC ACTCTATGAGCGGTCTCAAGCGATACGAGAGAAGGTGTTGGGTCTGGACC ATCCGGATGTGGCTCAGTCGCTCAACAACCGGGCGGGGTTGTTGAGAGTG CAGGTGAGAGCCGTTAGAATTTTCCAGGAATTTTCTAGTGGGAGGATGTG ACTGTAGTGTTGTTGAACGTGCAGGTGAGGGCCATCAGAATTTTTCTGGG AAACATCTTGTGGGCAGACAGAGGCGGACGTAAATTTCGAAGAAAATTCT TGTGGTGGGTATGTCTTGCTCAACAACCGGGTGGTGAGAGCCGAACAATG CTTCTACATGCTTCTACAAGAAAATGTTCCTCCGCAGTTCTAGACCCGAC TCATACTGAAATAGACCCTGCCACGCTGTCGACTACATTCCAGGGGAAGT ATGCGGAGGCTGAGCCGCTATACAAGCGCTCGCTGGCTATCGATGAGAAA GTCTACGGTCCTGATCACCCGGAGGTCGCTACAGACCTCAACAACTGGGC GGGGTTGTTGAAGAAGCAGGTGAGAGCCGTCAGAATTTTCTAGGAAACTT CTTGTGGTGTCCTGTTGCGGTGTACATCAACAACCGGAGTTGTTGAGAGC GCAGGTGAGAGCCGTCATAATTTTCTGAGAATATTCTTGTGGACAGGGGG AGTTAATGCAAATTCCGAATATTATTCTTGTTGCTAGTCATTGCTCAACA ACCGGGCGTTCTTGAGAGCGCAGGTGAGAGCCCTTGAAATTTTCCAAGAA TTTTCGTAGGGTCCACGCTTGTTGGTGAATCGTTCTATTCTTGGTGAACA GCTCTCTCACAGTAACCCACTGCTCGCTATGCAGGGCAAGTACGTGGAGG CCGAGCCACTCTATGAGCGGTCACAAGCCATACGGGAGAAAGTACTTGGT CCGGAGCACCCGGATGTAGCTGCATCGCTCAACAACCGGGCGTCGTTGTT GGAGAGCCAGGTGAGAACCGTAAGAAATTTCCAGGAATTTTCTAGTGGTA GGATGGGACTGTAGTGTTGTTGAACGTGCAGGTGAGGGCCATCAGAATTT TTCTGGGAAACATCTTGTGGGCGGACAGAGGCGGACGTAAATTTCGAAGA AAATTCTTGTGGTGGGTATGTCTTGCTCAACAACCGGGCGGTGAGAGCCG AACAATGCTTCTACATGCTTCTACAAGAAAATGTTCCTCCGCAGTTCTAG ATCCGACTTATACTAAAATAGACCCTGCCACGCTGTCGACTACATTCCAG GGGAAGTATGCGGAGGCTGAGCCGCTATACAAGCGCTCGCTGGCTATCGA TGAGAAAGTCTACGGTCCTGATCACCCGGAGGTCGCTACAGACCTCAACA ACTGGGCGGGGTTGTTGAAGAAGCAGGTGAGAGCCGTCAGAATTTTCTAG GAAATCTCTAGTGGTGGGATGTGACTACAGTGTTGCTGGGCATGCAGGTG AGGGCCCATAGAATTTTCTGGGAACGTTCTTGTCGGCAGAGAGGTTGGAC GGAAAATTCAAAGAATATTCTTGTGGTTGTAATGCTTCTACATGCTTCTA CAAGAAAATGTTCCTCCGCAGTTCTAGATCCGACTTATACTAAAATAGAC CCTGCCACGCTGTCGACTACATTCCAAGGGAAGTATGCGGAGGCTGAGCC GCTATACAAGCGCTCGCTGGCTATCGATGAGAAAGTCTACGGTCCTGATC ACCCGGAGGTCGCTACAGACCTCAACAACTGGGCGGGGTTGTTGGAGAGC CAGGTGAGAGCCGCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig94:580981..586295-

>mRNA_P-littoralis_Contig94.130.10 ID=mRNA_P-littoralis_Contig94.130.10|Name=mRNA_P-littoralis_Contig94.130.10|organism=Pylaiella littoralis U1_48|type=CDS|length=2931bp|location=Sequence derived from alignment at P-littoralis_Contig94:580981..586295- (Pylaiella littoralis U1_48)
ATGGAAGCGCGAGCTCCCTACAGCGGTGACAGCGTTCAAGCGGGGGGAGC
TGCGGAGCCCACGACGGAGCCTCACGCTTCTTTGAACTCCTCTTTTTCTT
CGCAGACTCTTGAGGAGGTCAAGCGGCTTCTCGCGGACAGGAAGCCATGG
CCTGCGTTTCTTCACGCCGGGTTGGCAAGCGATTGCCCGGAAAATGTGGG
GGAAGCATTGGCGTGGATGGCATCAGGAGCGGTAGGGCTCTTGAATGTCG
CGAGTGTGGGGCCGCTCGTGCCCGTCTGCGAGGCCTTCAAGGGGCTGATC
CAGGCGGCGGAGGGGGCGGCGGAGGCAGACGAGAAGCTGAGGGAACTGAT
CAGCTGGTGCGCCTTCCTTACTGAAGTCTTGCTCCAGCACGGGAAGGAGT
TGGACGATCTCGCGCCCGTTAGGAATCCCCTGGTTGCCTTTGTTTCCACC
ACAAACAAACTGGCGAAGCGTGCGAAAACGTTGGCGGCGAGAGGGAAGTG
CACGGCATTGCTCTGCTTTTGGAGGGACCGAAAACAGATCCAAGAATTCG
ACGCGAAGCTCCGCAAAATTTGGGAAGACATTCAAGGGCACACTATGTTA
GATATTGGCGCTCTGATCCGACGTGGACTTCCACCCAAAACGGGCGAGAT
GGCCAAGGTACCCCAGAACGCTCGAGTCCTACCGCCGGCGTTTGTTGAAC
GGAGCGACCTTGTCGAAGCTGTTGTGCATGAACTCGTGGCGACGGACCGG
GCGACCGAAAAAGCTCACGTGCTCCATGGCATACCCGGGGGGGGCAAGAC
CGTCACCGCCAGTGCAGTCGTGCGCTGCGAGGACGTGCGCCGAAGCTTCC
AGGACGGGATCTTCTGGGTGCAAGTAGGACAAGTTGGCACGGGCAATCCA
TTGGCCCTGCTGAAGGGCTTGGCGGAAGATCTTGCGCATGCGCCCTCCAA
TCGGCCACACACGGTCCCGCACGAATTCAGGGACGTCAATCACGTGATCA
GTCATCTTGTGGGCGTTCGCAAGCAGAGCAACCTACGCTGCCTGATCGTG
CTGGATGATGTATGGGACCCTCAGATGGTTCCGTTGTTCCTGCGTACAGG
GTTTCATTGCTTGGTGACTACGCGCGATCTAGCAGTGGTCCCCCGCCGCC
TGCGGGGAACGTGCACGGCGGTGGATATGCTGACGGAAACCGAGGCGCTG
GAACTCCTCAAGAAAGCGAGCCGGGCTCCTTCAAGTATTCCGAGGGACGA
GGGCCTGAAGGTTGCCGATGACTGCGGCTTTCTCCCGCTTGCCGTCGCCA
TCATCGGTGCCATGGGTAGCTTGCGAGCAGACCCACTTTCCCCCGAAACA
TGGAAGGGTGTCCACGCGCGGCTAGTCGAAGAACCAACTCTGGTGCAAGA
CCATGTTGGAGGTGCCCTCGCCGTCAGCTTTCGTGAGCTCAACGAGAACG
CCAGGACGCGGTTTCGCAAGCTTGGTGTGCTGGTGCGGGGGGTGTGGGCC
CCAGTCGACATGGTGGCTCATCTCTGGGAACAGGACCTTAGTGACACCAT
ACTTTTGATGAGCGACCTGGTGGACAAGTCCCTCGTGAAGGTCGTGGAGC
AGAGCTACTACCTGCACGACCTGGTGCTGGACTTTGCGAAAGACGAGCTC
AGGAAGTTGAAAGGAAAGGTGCAGCTTGTCACGTCTCGGCAAGCCCAGTA
CCTGGGCACGACATCCGTGCTCGAGGACTACGCACGGGCTGGCGAGGTGC
TACGGGGGTTCTACGCCCTCATAGCTCTGTGGCAGTCAGTGGAGGATATA
TCTGGTGACAAGCAGCTGGAGGTAAGCACGTACAGCGTCAAGCTGAAAGC
TTTGGAGGGGAGCGAACCGACAGCAGGTGTGGCCTTTACCAACTGGGCTG
CGGGGAGATTGTTCCACCTCCAGGGCAAGTATGCTGAGGCCGAGCCCCTC
TTCGAGCGGGTACAGACCATACAAGAGAAGCTGCGGGGTCCGGAGCATCC
GGATGTGGCGACGTCGCTCAACAACCGGGCGGAGTTGTTGCAGGCGCAGG
GCAAGTATTCTGAGGCGGACCCTCTGTACAAACGAGCTGCTGCGATCAAC
GAGGCCGTTCTTGGTCCAGAACACCCAAGAGTGGCTACAGATCTCAACAA
GCGGAGTTTGTTGCTGAGCATGCAGGGCAAGTACGCCGAAGCTGAGCCAC
TCTATGAGCGGTCTCAAGCGATACGAGAGAAGGTGTTGGGTCTGGACCAT
CCGGATGTGGCTCAGTCGCTCAACAACCGGGCGGGGTTGTTGAGAGTGCA
GGGGAAGTATGCGGAGGCTGAGCCGCTATACAAGCGCTCGCTGGCTATCG
ATGAGAAAGTCTACGGTCCTGATCACCCGGAGGTCGCTACAGACCTCAAC
AACTGGGCGGGGTTGTTGAAGAAGCAGGGCAAGTACGTGGAGGCCGAGCC
ACTCTATGAGCGGTCACAAGCCATACGGGAGAAAGTACTTGGTCCGGAGC
ACCCGGATGTAGCTGCATCGCTCAACAACCGGGCGTCGTTGTTGGAGAGC
CAGGGGAAGTATGCGGAGGCTGAGCCGCTATACAAGCGCTCGCTGGCTAT
CGATGAGAAAGTCTACGGTCCTGATCACCCGGAGGTCGCTACAGACCTCA
ACAACTGGGCGGGGTTGTTGAAGAAGCAGAATATTCTTGTGGTTGTAATG
CTTCTACATGCTTCTACAAGAAAATGTTCCTCCGCAGTTCTAGATCCGAC
TTATACTAAAATAGACCCTGCCACGCTGTCGACTACATTCCAAGGGAAGT
ATGCGGAGGCTGAGCCGCTATACAAGCGCTCGCTGGCTATCGATGAGAAA
GTCTACGGTCCTGATCACCCGGAGGTCGCTACAGACCTCAACAACTGGGC
GGGGTTGTTGGAGAGCCAGGTGAGAGCCGCG
back to top