mRNA_P-littoralis_Contig1215.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1215.3.1
Unique NamemRNA_P-littoralis_Contig1215.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1215.3.1 vs. uniprot
Match: A0A6H5K1G6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G6_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.950e-16
Identity = 48/96 (50.00%), Postives = 55/96 (57.29%), Query Frame = 2 
Query:  218 EMDTDQHSTPRRQSLGSRPAITPSLSVQRAEDGRRKRRTXXXXXXXXXXXXXXXXXXXAE---YPPGFRRGRAGIDEAKLPVYKFLQQGVREEGGQ 496
            +MDT   STP RQSLG+RPA+TP+ S ++ ED RRKRRT                        YP GF+ GR G D AKLPVY FLQQG  EEG Q
Sbjct:   23 DMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPRGFKPGREGSDGAKLPVYMFLQQGALEEGVQ 118
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BLAST of mRNA_P-littoralis_Contig1215.3.1 vs. uniprot
Match: A0A6H5KRI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI1_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.350e-15
Identity = 48/96 (50.00%), Postives = 55/96 (57.29%), Query Frame = 2 
Query:  218 EMDTDQHSTPRRQSLGSRPAITPSLSVQRAEDGRRKRRTXXXXXXXXXXXXXXXXXXXAE---YPPGFRRGRAGIDEAKLPVYKFLQQGVREEGGQ 496
            +MDT   STP RQSLG+RPA+TP+ S ++ ED RRKRRT                        YP GF+ GR G D AKLPVY FLQQG  EEG Q
Sbjct:   23 DMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPCGFKPGREGSDGAKLPVYMFLQQGALEEGVQ 118
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1215.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1G6_9PHAE2.950e-1650.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KRI1_9PHAE3.350e-1550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1215contigP-littoralis_Contig1215:15943..17874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size964
Hectar predicted targeting categorysignal peptide
Exons3
Cds size462
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789523.7044282-UTR-P-littoralis_Contig1215:15942..161051680789523.7044282-UTR-P-littoralis_Contig1215:15942..16105Pylaiella littoralis U1_48UTRP-littoralis_Contig1215 15943..16105 +
1680789523.752637-UTR-P-littoralis_Contig1215:17535..178741680789523.752637-UTR-P-littoralis_Contig1215:17535..17874Pylaiella littoralis U1_48UTRP-littoralis_Contig1215 17536..17874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789523.7191749-CDS-P-littoralis_Contig1215:16105..161541680789523.7191749-CDS-P-littoralis_Contig1215:16105..16154Pylaiella littoralis U1_48CDSP-littoralis_Contig1215 16106..16154 +
1680789523.7290568-CDS-P-littoralis_Contig1215:16926..170961680789523.7290568-CDS-P-littoralis_Contig1215:16926..17096Pylaiella littoralis U1_48CDSP-littoralis_Contig1215 16927..17096 +
1680789523.7382076-CDS-P-littoralis_Contig1215:17292..175351680789523.7382076-CDS-P-littoralis_Contig1215:17292..17535Pylaiella littoralis U1_48CDSP-littoralis_Contig1215 17293..17535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1215.3.1prot_P-littoralis_Contig1215.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1215 16106..17535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1215.3.1

>prot_P-littoralis_Contig1215.3.1 ID=prot_P-littoralis_Contig1215.3.1|Name=mRNA_P-littoralis_Contig1215.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=154bp
MKHLILLLWAGAWAVRGTEMDTDQHSTPRRQSLGSRPAITPSLSVQRAED
GRRKRRTSGRAPAGTDAASTSTKEEGAEYPPGFRRGRAGIDEAKLPVYKF
LQQGVREEGGQPFEIQQGATQRMALPVNNEEREEVVRAATWRNADHVFET
RST*
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mRNA from alignment at P-littoralis_Contig1215:15943..17874+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1215.3.1 ID=mRNA_P-littoralis_Contig1215.3.1|Name=mRNA_P-littoralis_Contig1215.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1932bp|location=Sequence derived from alignment at P-littoralis_Contig1215:15943..17874+ (Pylaiella littoralis U1_48)
CAGGGGAGGGGATGGCCATCCCCGCTTTCTATGCGCGCCCGATTTTTTTT
TTCATGATGAGGGGTTAATTCCGCCGCCTCCCCCCGGCACAGGAGTGCCT
CGGCAACAGATCAAACATACTCGACACGTAGGCACCTGCCCAAGGTGCCT
GTGCGCCCAATCGATGAAGCACCTCATACTCCTGCTGTGGGCAGGAGCTT
GGGCTGTGAGAGGTGAGATAGCAAAAGTTATCGACTGTGCAACAGGTATG
ACCATTCTTCATGAACGCCGCCATCAGCCGACTGAGGTGTACTGGAGGGC
ACCTGGCTTAGCTTGTAGGGCGTACGGTATGCAACGGGCCACGCAGACTC
ATGCTGTAGGCACGTGGGAGTCGAGGGTTTCTTACGGTTTGGCAAACGAT
GGAGTATTGACGAAATGGTGGGAACTTCTCTCGACACAACCCCAGTAAAA
CTGGAGTATCGTAGTCGCTGGAAGACAGGCCGCACATTTTTCGAATCTAT
CACATGCTAAAAGCCTATTATACAGATTTCATGCTCAGTACATGATGACG
TGTACCCTGCTCCTGCTGTTGTGCACTTTTTCGTGAACACAAAAAAACTA
GTTCGCGGTACAGGAGTACAACAGTACTGCTGTAACTGCTGTATATACTG
CTGTTTAACGTATGTTGTGTGAGATCAGTCAGCAAGTGTGGGCCCAACAC
AACATAACAGCAGCAGAAATCATCATTCGGGTCTGGAAATTGATTCACAC
GATATAGGTGCAAAAGAGAATACTGATGTTGTTGGTTGTTGCTCCCCTGT
CAGAAGCTGTATTGCACCTTCTCTCCTTCCTCGTACACACACACCATAGC
ATCTTCTTTACCATGAGTATCCCTTGTAGCCTCTTTAGGGATGTAGCCCG
TCTGTTGCAGGCCGTCGTTAGGCGCCCGGATTGCTCCAAAACCCAGTTGT
TTTTCGGTCGCCCTTACGCCCGCGTCTCCGCCAGGTACTGAAATGGACAC
CGATCAACACTCCACCCCAAGGCGCCAAAGCCTGGGGTCTCGTCCTGCCA
TTACACCATCACTTTCGGTCCAGAGGGCCGAAGACGGGAGGCGTAAGCGA
CGAACATCCGGACGGGCCCCTGCTGGAACAGATGCTGCATCCACCTCCAC
GAAGGTGCGCTGATCAAAGTCTTTGTTTTGTTCCATGCAGAGGGTGAACG
AGGTCCATGACAGTCAGTTTAGTTTTCAGACCCCGTTTGAGGTCGATGGT
CGCTCTTTTACTTCCCGCTACACCAGAACCCAGACAAATAGCATATGACA
CGAAGGGGATCGCTCGCTACTATCTGATGGACATGTGCCGATCTCTGCAG
GAAGAGGGGGCGGAATACCCTCCTGGGTTTCGACGAGGCAGGGCGGGAAT
CGATGAGGCGAAGCTGCCTGTGTACAAGTTCCTACAGCAAGGCGTACGGG
AAGAGGGCGGACAGCCGTTCGAGATCCAACAGGGCGCAACTCAGCGCATG
GCATTGCCTGTAAACAATGAAGAGCGAGAAGAAGTAGTGAGAGCCGCGAC
GTGGCGCAATGCAGACCATGTCTTCGAGACGCGCTCGACATAAAAGAACT
GTTGCGCGTCGTTCGTGTGCGGTGAAATGAAAAATGTATGACGTGTCGCT
TACGTTGAGTTCCCGATTTGTTTTCCCTTCCTTTTTTGTGTGTGTGTGTG
TTTTTTTTCGTGCCGTAGAAGGGAGGGGCGGAAGTCTTGTGTGCGACTAG
GGCGGGCACCAATTTGTCTTATATATTGATGTCTAGACATACAGGATTTG
TGTTTCCGTCATCAGCGTTGGTGCGTGCGTTTCTGCTTATAGTGGCTCCA
AAATCAGGGAAAGTCGTGTTATTTTCCGCCGTGATGATGTATGTGGAAAT
AATAGGCACTGCTGTGCTGCGAACCACGAACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1215:15943..17874+

>mRNA_P-littoralis_Contig1215.3.1 ID=mRNA_P-littoralis_Contig1215.3.1|Name=mRNA_P-littoralis_Contig1215.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=462bp|location=Sequence derived from alignment at P-littoralis_Contig1215:15943..17874+ (Pylaiella littoralis U1_48)
ATGAAGCACCTCATACTCCTGCTGTGGGCAGGAGCTTGGGCTGTGAGAGG
TACTGAAATGGACACCGATCAACACTCCACCCCAAGGCGCCAAAGCCTGG
GGTCTCGTCCTGCCATTACACCATCACTTTCGGTCCAGAGGGCCGAAGAC
GGGAGGCGTAAGCGACGAACATCCGGACGGGCCCCTGCTGGAACAGATGC
TGCATCCACCTCCACGAAGGAAGAGGGGGCGGAATACCCTCCTGGGTTTC
GACGAGGCAGGGCGGGAATCGATGAGGCGAAGCTGCCTGTGTACAAGTTC
CTACAGCAAGGCGTACGGGAAGAGGGCGGACAGCCGTTCGAGATCCAACA
GGGCGCAACTCAGCGCATGGCATTGCCTGTAAACAATGAAGAGCGAGAAG
AAGTAGTGAGAGCCGCGACGTGGCGCAATGCAGACCATGTCTTCGAGACG
CGCTCGACATAA
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