mRNA_P-littoralis_Contig91.170.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig91.170.1
Unique NamemRNA_P-littoralis_Contig91.170.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig91.170.1 vs. uniprot
Match: A0A6H5K0P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P6_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 9.600e-29
Identity = 71/151 (47.02%), Postives = 82/151 (54.30%), Query Frame = 2
Query: 1319 VTDATADGRVCNVEMDGHSRLMHIWWRPREQVALWNRYGHVTLYDDTAVKKRFHMPIGVLAVIDSEKSDANRGPRHNGGHHDGHGRVDVEECTQV-AW---------G*AARHLHPGR*FGHGRGSGSGVP*CAAKALSVAPEPKHPQGLR 1741
            V  A ADG VC ++MD   RL H WW+ REQVALWNRYGHV LYDDTAVK R+ MP+GVLAVIDSE      G             +  +  T    W         G     LHPGR  G   G   GVP  A +AL +AP+P+H QG R
Sbjct:   10 VMAARADGGVCEIKMDDSGRLTHSWWQTREQVALWNRYGHVALYDDTAVKNRYRMPLGVLAVIDSEYRTRIVGQS-----------ITADTTTDTFLWMLKSALESRGGKQPDLHPGRGCGDDGGGARGVPGRADEALIMAPQPEHHQGPR 149          
BLAST of mRNA_P-littoralis_Contig91.170.1 vs. uniprot
Match: A0A6H5JZ86_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ86_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 5.760e-28
Identity = 62/80 (77.50%), Postives = 68/80 (85.00%), Query Frame = 3
Query: 1521 RTRIVGQGITEDTTTDTVVWMLKNALRSRGGKQPDISIQDADSAMAGAVGRVFPDALPRRCLWHLNRSILKAFAKVLGRE 1760
            RTRIVGQ IT DTTTDT  WMLK+AL SRGGKQPDISIQDAD+AM  AV  VFPDAL RRCLWHLN++I+KA AKVLG +
Sbjct:   54 RTRIVGQSITADTTTDTFQWMLKSALESRGGKQPDISIQDADAAMTAAVREVFPDALARRCLWHLNQNIIKALAKVLGGD 133          
BLAST of mRNA_P-littoralis_Contig91.170.1 vs. uniprot
Match: A0A6H5K3E8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E8_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 3.810e-27
Identity = 62/80 (77.50%), Postives = 68/80 (85.00%), Query Frame = 3
Query: 1521 RTRIVGQGITEDTTTDTVVWMLKNALRSRGGKQPDISIQDADSAMAGAVGRVFPDALPRRCLWHLNRSILKAFAKVLGRE 1760
            RTRIVGQ IT DTTTDT +WMLK+AL SRGGKQPDI IQDAD+AM  AV  VFPDAL RRCLWHLN++I+KA AKVLG E
Sbjct:  107 RTRIVGQSITADTTTDTFLWMLKSALESRGGKQPDIFIQDADAAMTAAVREVFPDALARRCLWHLNQNIIKALAKVLGGE 186          
BLAST of mRNA_P-littoralis_Contig91.170.1 vs. uniprot
Match: A0A6H5K5C5_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C5_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 6.200e-27
Identity = 62/80 (77.50%), Postives = 68/80 (85.00%), Query Frame = 3
Query: 1521 RTRIVGQGITEDTTTDTVVWMLKNALRSRGGKQPDISIQDADSAMAGAVGRVFPDALPRRCLWHLNRSILKAFAKVLGRE 1760
            RTRIVGQ IT DTTTDT +WMLK+AL SRGGKQPDI IQDAD+AM  AV  VFPDAL RRCLWHLN++I+KA AKVLG E
Sbjct:  107 RTRIVGQSITADTTTDTFLWMLKSALESRGGKQPDIFIQDADAAMTAAVREVFPDALARRCLWHLNQNIIKALAKVLGGE 186          
BLAST of mRNA_P-littoralis_Contig91.170.1 vs. uniprot
Match: A0A6H5KUA5_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA5_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.070e-25
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 3
Query: 1521 RTRIVGQGITEDTTTDTVVWMLKNALRSRGGKQPDISIQDADSAMAGAVGRVFPDALPRRCLWHLNRSILKAFAKVLGRE 1760
            RTRIVGQ IT DTTTD ++WMLK+AL SRGGKQPDI IQDAD+AM  AV  VFPDAL RRCLWHLN++I+KA AKVLG +
Sbjct:  276 RTRIVGQIITADTTTDALLWMLKSALESRGGKQPDIFIQDADAAMTAAVREVFPDALARRCLWHLNQNIIKALAKVLGGD 355          
BLAST of mRNA_P-littoralis_Contig91.170.1 vs. uniprot
Match: A0A6H5JAS6_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAS6_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.500e-24
Identity = 60/80 (75.00%), Postives = 65/80 (81.25%), Query Frame = 3
Query: 1521 RTRIVGQGITEDTTTDTVVWMLKNALRSRGGKQPDISIQDADSAMAGAVGRVFPDALPRRCLWHLNRSILKAFAKVLGRE 1760
            RTRIVGQ IT DTTT+T VWMLK+ALRSRGGKQPDI IQDAD AM  AV  VFPDAL RRCLWHL + I+KA AK LG +
Sbjct:  266 RTRIVGQSITADTTTNTFVWMLKSALRSRGGKQPDIFIQDADVAMTAAVREVFPDALARRCLWHLYQHIMKALAKDLGGQ 345          
BLAST of mRNA_P-littoralis_Contig91.170.1 vs. uniprot
Match: A0A6H5LMZ3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMZ3_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 5.710e-24
Identity = 59/80 (73.75%), Postives = 66/80 (82.50%), Query Frame = 3
Query: 1521 RTRIVGQGITEDTTTDTVVWMLKNALRSRGGKQPDISIQDADSAMAGAVGRVFPDALPRRCLWHLNRSILKAFAKVLGRE 1760
            RTRIVGQ IT DTTTDT +WMLK+AL SRGGKQPDI IQDA +AM  AV  VFPDAL RRCLWHL ++I+KA AKVLG +
Sbjct:  604 RTRIVGQSITADTTTDTFLWMLKSALESRGGKQPDIFIQDAVAAMTAAVREVFPDALARRCLWHLKQNIIKALAKVLGGD 683          
BLAST of mRNA_P-littoralis_Contig91.170.1 vs. uniprot
Match: A0A6H5JNB0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB0_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 5.880e-24
Identity = 60/80 (75.00%), Postives = 65/80 (81.25%), Query Frame = 3
Query: 1521 RTRIVGQGITEDTTTDTVVWMLKNALRSRGGKQPDISIQDADSAMAGAVGRVFPDALPRRCLWHLNRSILKAFAKVLGRE 1760
            RTRIVGQ IT DTTT+T VWMLK+ALRSRGGKQPDI IQDAD AM  AV  VFPDAL RRCLWHL + I+KA AK LG +
Sbjct:  270 RTRIVGQSITADTTTNTFVWMLKSALRSRGGKQPDIFIQDADVAMTAAVREVFPDALARRCLWHLYQHIMKALAKDLGGQ 349          
BLAST of mRNA_P-littoralis_Contig91.170.1 vs. uniprot
Match: A0A6H5JK57_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK57_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 6.410e-24
Identity = 58/80 (72.50%), Postives = 64/80 (80.00%), Query Frame = 3
Query: 1521 RTRIVGQGITEDTTTDTVVWMLKNALRSRGGKQPDISIQDADSAMAGAVGRVFPDALPRRCLWHLNRSILKAFAKVLGRE 1760
            RTRIVGQ IT DTTT+T VWMLK+ALRSRGGKQPDI IQDA+ AM  AV  VFPDAL RRCLW L + I+KA AK LG +
Sbjct:  266 RTRIVGQSITADTTTNTFVWMLKSALRSRGGKQPDIFIQDAEVAMTAAVREVFPDALARRCLWRLYQHIMKALAKDLGGQ 345          
BLAST of mRNA_P-littoralis_Contig91.170.1 vs. uniprot
Match: A0A6H5KZF1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF1_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.850e-23
Identity = 59/101 (58.42%), Postives = 70/101 (69.31%), Query Frame = 3
Query: 1521 RTRIVGQGITEDTTTDTVVWMLKNALRSRGGKQPDISIQDADSAMAGAVGRVFPDALPRRCLWHLNRSILKAFAKVLGREGFCK*GVLNLCMLVSYDCPQL 1823
            RTR +GQ  T D TTDT +WMLK ALRSRGGK+PDI IQDAD+AM  AV  VFP+AL RRCLWHLN++I+KA AK LG       G L +C  V     ++
Sbjct:  312 RTRTIGQSTTADITTDTFLWMLKGALRSRGGKRPDIFIQDADAAMTAAVREVFPEALARRCLWHLNQNIMKALAKDLG-------GKLKVCSTVCLPLNRI 405          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig91.170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5K0P6_9PHAE9.600e-2947.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ86_9PHAE5.760e-2877.50MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K3E8_9PHAE3.810e-2777.50SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K5C5_9PHAE6.200e-2777.50MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KUA5_9PHAE1.070e-2575.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JAS6_9PHAE1.500e-2475.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5LMZ3_9PHAE5.710e-2473.75SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JNB0_9PHAE5.880e-2475.00SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JK57_9PHAE6.410e-2472.50MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KZF1_9PHAE2.850e-2358.42MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig91contigP-littoralis_Contig91:563273..568237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LU83
Preferred nameFHY3
PFAMsFAR1,MULE,SWIM
Model size4040
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0007602,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009585,GO:0009605,GO:0009628,GO:0009639,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010017,GO:0010018,GO:0010218,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071490,GO:0080090,GO:0104004,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons3
Evalue9.96e-15
EggNOG OGs2CMBY@1|root,2QPXR@2759|Eukaryota
DescriptionMULE transposase domain
Cds size402
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791820.7722745-CDS-P-littoralis_Contig91:563272..5636741680791820.7722745-CDS-P-littoralis_Contig91:563272..563674Pylaiella littoralis U1_48CDSP-littoralis_Contig91 563273..563674 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791820.7857068-UTR-P-littoralis_Contig91:563674..5659001680791820.7857068-UTR-P-littoralis_Contig91:563674..565900Pylaiella littoralis U1_48UTRP-littoralis_Contig91 563675..565900 -
1680791820.7964041-UTR-P-littoralis_Contig91:566617..5677751680791820.7964041-UTR-P-littoralis_Contig91:566617..567775Pylaiella littoralis U1_48UTRP-littoralis_Contig91 566618..567775 -
1680791820.8114803-UTR-P-littoralis_Contig91:567984..5682371680791820.8114803-UTR-P-littoralis_Contig91:567984..568237Pylaiella littoralis U1_48UTRP-littoralis_Contig91 567985..568237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig91.170.1prot_P-littoralis_Contig91.170.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig91 563273..563674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig91.170.1

>prot_P-littoralis_Contig91.170.1 ID=prot_P-littoralis_Contig91.170.1|Name=mRNA_P-littoralis_Contig91.170.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
MHQALLAMPWVSVPCFALRRKGRYIVTSIVEHTFFSLMFPLLGPPHNRAK
RPHQGGVQLSHFPSGCCQALFGNHRQPEGAAALRSAIDHLPRTRMATPAT
AASKGVLDSCEFPIACWPRRFMEEGMTAAVFFCQ
back to top

mRNA from alignment at P-littoralis_Contig91:563273..568237-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig91.170.1 ID=mRNA_P-littoralis_Contig91.170.1|Name=mRNA_P-littoralis_Contig91.170.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4965bp|location=Sequence derived from alignment at P-littoralis_Contig91:563273..568237- (Pylaiella littoralis U1_48)
CACGTTTGTATGCGTGCTTCACAGGTTTATGAAGAAATGAATACTCTGTA CTTTGTCGTATGATACTCGTTGCTCGTGTCCTCCCGTGTGACTGACATGT GGGGGTGACACCCGCCATGCTTCCATCTGCTCCTGCACGTGTGGGGTGTC GGCCCGTGGTGGTGTTACCGCTGCTGGCCAGGCCGGAGCTATTCCCGGCC CTTGACCGCAACAGCAACCGATGACGAGCACGAGTCCCCCGCGGGAAGCG CAGGTAACAGGCGTACCGCTTGTTGCCCATACACCCAGAAGAACGATTCG ATGCCGGTTTACTATTTTTGCCAGAAGTGCGCGTGCCACAGTACCGCAGT GCACAAAAAGAGTTTTCGGCGTGATAGCTGCCTGTTCAATCTGTAGCATC TTCCACACACCGAACAACATGCCACTGTTGCATCCGTGCTTTGCGGGTTG CGTGACACCAAGGTGTACAACTCGGCTGCGTTGAAGATGAAGCTGGATTC AGTGCTGACACAGGGGCAGATATTTGAAGAAAGTGGAGGCCGACGTAGTG GAAGCGTGCTGCGGTGAAGGAACGCTCCTTGCTACCGCCAAATCGCTCAA GTGTCACGACGGAACGAGGTAGCGTTGGTAGATGAAGAGGCTGTTGTGTA CTCGAGGCGGGGCTCGCCGGCAGGAGATTTACCAGAAGAGTCTAGACACG GGTGAGATGGTCATCCAGGGGACGTGGGTACGTTCGTATACAACGATAGA GGCAACGAATATGGGGCGTGTCGCGGGCAACCGTGTTGCAAGGGAGAAGT TTTGTTTCCAGGTTCACACATCACGCACTGCCATGACTTCGTCGACCGTA TGTTTCGTTTGGAATACCCGTTGCGTTGCGCAGCACCTTGACGACAACGG CGGCAAAGCCGTGAAAGCGGGAAGCCTGGTTGTCCGTTTGAGGTGGGTGC GACGGCTTAGGATTCTTGCTGGCGTAGGGCAGAGTATGTGATGATATTGC ATTGGACTCGAAAAGGATGTAACGTATTGAATTCGTGAAATGGCGGAAAT GTGAGTGTTCAGAATTGGGATTCAGGTCGGAGTCGTAGCGACCCATGACA CGCACGTCTCCCTTGTTTTGTTTGTGGGCCCAGCGTTCCGTTGGTTTAGG TAACCGTCCGGCATGCCAAAAGCACCGGCGTGGGCATCAACAGTCGCGCG GTTCAGAACGTGGCTGAGGGTATAACTGGAGCGGAGCGTCCGTGGGACGC TGCCGATGCGTGTGAAGAAGTATCATATGTCGATATGCTCGTTGAAGTTG TGGCTACTCATTTGTTTTGTGGGATGTTGTTGCTTAGGGCGGTACGAAAT GTCCAGGTCCGCACCACTGCGGGTACCAACTAGGATATATTAGGGGCCGA TAAATCGTCATGGCACCAAGCGATAAACCTTGCTCGTTCGTTACAAGCAC GCCTCTCCTGTCCTTCCCGCCCCCACCATTTCCGGGCGCTTGACATGTTG GAGGGTACGTGATCCATGCAATCCCAGGTCACAGATGCCACTGCCGACGG CAGAGTGTGCAACGTGGAGATGGATGGGCACAGCCGCCTCATGCACATCT GGTGGCGACCAAGAGAGCAGGTGGGTCCCATGTCGTATCCCAAAGGAACA CCCTTATCCGCTTCGAAGTTTTTTTTTTCGCGTGTCTCTTCGTACTTGCC GCTACGCTCTCGGCGAATGGTGGACTTTGCGGCAAACCTTGATCGCTCCT GCCTTGCTGTCAAACAAAAATCGAAAAGTCGACTTCGTGGTCCTTTCTGA AACGCCCGAAAAAAGAGGTGTGTGGCGAAAAATCACGAAAATACGCCTAA CGAAGGGTGCATTTCGTTTTTCGCCGCATTCTGGACATTTCTTGTTTTTC AATATCTATGGTCGATTCCGCGTGGCCGATTTATAGGGGGTACATACGCC TAGGGAGAAGTTGAGAGTATTACCTCCTCAGGCGCTACCACTATATTTGA CCTAGTTCGTACACTACAGCAGGGGCAGTACGCAGTACATCCATGGCTGT AATTCGGCACTCAGACTGAAATCTAGCATTCTGACTATGAGATGGGGTGA ACATAATTGAGAGAGTTAGGGAGGGGTAGAAATACCTGCACCCCACCCAC CCCCCCCCAAAAAAAAACTGTTTTTTTCGCGATACCCGTCAACCTCCAAC CCCAAATCCCGCATGAAGTGCGTCAAGAGTGCATGCAGGATGTCGCCAGG GAGCGTGCGGTTTCATGCGCCGAACATACGACACACCCAATCGAAGTGCC CTCAACCCCGTTCGACATCATGCCCCCGAATATGCAGGTGGCGCTTTGGA ACCGCTACGGCCACGTTACGCTGTACGACGATACCGCCGTGAAAAAAAGG TTCCACATGCCCATCGGAGTGCTCGCCGTCATCGACTCGGAAAAATCGGA CGCGAATCGTGGGCCAAGGCATAACGGAGGACACCACGACGGACACGGTC GTGTGGATGTTGAAGAATGCACTCAGGTCGCGTGGGGGTAAGCAGCCAGA CATCTCCATCCAGGACGCTGATTCGGCCATGGCAGGGGCAGTGGGTCGGG TGTTCCCTGATGCGCTGCCAAGGCGCTGTCTGTGGCACCTGAACCGAAGC ATCCTCAAGGCCTTCGCCAAAGTCCTTGGGCGGGAAGGTTTCTGTAAGTG AGGTGTATTGAATTTGTGTATGTTGGTGTCGTACGACTGTCCTCAGCTGC TACCCTTCTGAGCCCTCTGCGGCGTGAAAACCCTTTGCGACTGCGTGTCG TTTGTTTCGCAAGAAATATTTCCACTCCTCCTCGCGTACGTCGTGGTAGG CATGTTCCCCTATCTCAAGGTGCGAGGGGTTGCCAGTAGTGTAAGTCACG TCCCGAGCACACAAAAGCAGCAGTAGCTCTCAGCACTGTGTTCAGTATAA AATGATCAAAGGGGTTGTGGAGGAGTGGCGTTTTGTAACAGGGAACCAAA TGACTTCAACAAAGTGTCAAGGATTTGCACAAATGAAGCTTTATTTGGAG GGGGTTCAAATATTACCAGGAAAAACGTCGTTTTAGTAGCTTTTTGAGCC GAAGACTAAAATTTGGAATTGTGCCCGATCGAAAACCTCTCAAGACTATT GGCCGAGGAGGTCGCCCGGTAAGCCAGCTAAATTCGCGTCAAATCCGTTT GTTGATCGGGGGTACACGCGCGGAGAACGGTGGCATCGCGCAAATGCACC CCGAAGATGTCCCATTTTGGTGCAATTTCGTACTGCTGCAGGCACCTAGA TACAGTTCACACCAACACCTCTAGAAGGGTTTCTGGCTGCTGTCAAGGCA TGGGACGCCACTCACACACCATATCAGTAGGTCGTGCTAATTTGGAGCAG TGTGGTTGCTTGTGGCGAGCTTGCTCCGTCCGTAGCTGAAGCACAGTTTC TGCGGTGTTTCGCGGAAAAATCCATGCGGCAAGGTGGAGCTCAAAACGTG AAGTTTGAGCTCCTCGATCTCGCGCTGCAAGGCATTTACAGAGGTGGGGC ACAATTCTAATCCACACAGGAGTTGAAGCTGCCGTGAGATCTCTAAAATC CTATCGAGGTTTGTGCCTCTGAAGGCTGAAGGAGGGTGGATAGGGAGTGT ACAGCGGTCAGGGGGTGGTCACCGCCCAGGATTTTTTATCCAGAAGTTTG ACACGTGGAGAAAAACAAAAAAATGGTGGAGCCAAAAATACCACCACGGA GCCCAAGAGGTTGATACCCAGCGTCCCGAATAGCCTTGCCTTAAGTCAGT CGTAGCTGCTAGTAGGGCGAAACATGCATGATATCTTCGGTTTGCTCATT TCATGAAAAAAACTTCGGACCTCTAGTTTCTTCACGTCTCCGCTCATCAA ATACGAGGTATTCCGGTGTGCATGTGACAGTCAAGTGTTGTCACCGGCGA GCACCTGGGGCACCGAGGGGTCGAACTGACGCAACACCCAGTGGCCAACG TCATCTTGGAACCGGCCTGTCTCCTCATCTTTTTGCATAGGCCTTCATGG GCGTTTCAAGTGTGCTCGTGAGCAGGTGTCGTTGGAGAAGTTCGAAGCGA GGTTTAACGCCCTGATCGACAAGTACCCGCAGGCGGAGCAGTATTTGCGA GTGACATACAACGACCGCGCTCGGTGGGCCAAATACGTGTCACCTCTGGT GTTCTCTGTGGGTTCGTGGACGGCATCACGGGGTAAAGGCGCATTCCTGC GTCATCTGTCATGCTTGTATCGGTAGAGAAGCACAGCCCATGGCCATGCC CTGGTGTTGGTGGGTGGTGTACCTTCGTTGTCGTGTCGTGTCGTGTCGCC TCGAGGGGTCGTGTTCGGGTACTCCCATGTACCTTGCTGTTGGTTCGTTC ATGAGCAACTAATTATACGCCGTGAAGGAGTGCTGAGCTAGTCTCAAGCC TGCATGCCGTTGGCCTGTCCCCACCCCTTCGAACCATCGAGCTGTCCTCC TCGATTTTATGTGCTTTGCTCGGTTCGCTTTTTTGTACTCCGTCTTTGAA CCTAGCGCGATCGATGCATCAAGCGCTTTTGGCGATGCCATGGGTGTCCG TCCCGTGTTTTGCCCTCCGGCGGAAGGGACGATACATCGTGACATCGATC GTTGAACACACATTTTTTTCTCTTATGTTTCCGCTTCTTGGTCCGCCGCA TAACAGGGCAAAACGCCCTCATCAAGGAGGAGTGCAACTCTCGCACTTCC CTTCTGGATGTTGTCAAGCACTTTTTGGGAATCATCGGCAGCCAGAGGGC GCCGCGGCGCTGCGTAGCGCCATCGACCACCTACCGCGTACCCGAATGGC GACTCCAGCAACGGCCGCTTCCAAGGGTGTGCTAGACTCCTGCGAATTCC CCATCGCCTGCTGGCCGCGACGGTTCATGGAGGAAGGGATGACCGCGGCC GTTTTTTTTTGCCAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig91:563273..568237-

>mRNA_P-littoralis_Contig91.170.1 ID=mRNA_P-littoralis_Contig91.170.1|Name=mRNA_P-littoralis_Contig91.170.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig91:563273..568237- (Pylaiella littoralis U1_48)
ATGCATCAAGCGCTTTTGGCGATGCCATGGGTGTCCGTCCCGTGTTTTGC
CCTCCGGCGGAAGGGACGATACATCGTGACATCGATCGTTGAACACACAT
TTTTTTCTCTTATGTTTCCGCTTCTTGGTCCGCCGCATAACAGGGCAAAA
CGCCCTCATCAAGGAGGAGTGCAACTCTCGCACTTCCCTTCTGGATGTTG
TCAAGCACTTTTTGGGAATCATCGGCAGCCAGAGGGCGCCGCGGCGCTGC
GTAGCGCCATCGACCACCTACCGCGTACCCGAATGGCGACTCCAGCAACG
GCCGCTTCCAAGGGTGTGCTAGACTCCTGCGAATTCCCCATCGCCTGCTG
GCCGCGACGGTTCATGGAGGAAGGGATGACCGCGGCCGTTTTTTTTTGCC
AG
back to top