mRNA_P-littoralis_Contig908.16.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig908.16.2 vs. uniprot
Match: D7FKS6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKS6_ECTSI) HSP 1 Score: 494 bits (1272), Expect = 6.130e-162 Identity = 254/337 (75.37%), Postives = 285/337 (84.57%), Query Frame = 3
Query: 699 QYQ-PRAGRDIYGSEGSRFHIKFDSAQGPRRSTR-RFDPDAGSVPSSTITPGDVVMVGGVSAGIAAVQRYNRKRFLEE--NGQDDSSPTLPARAGRKGGNKQEAVVTSLQLSLYCDRNGGQGDLLATLDKLSQTSDVNSPRGLSALISEVCLALLRSDRDWIGGTGGVKTYLPNVRSNNRGKKPSPASRAKRDFNRATMRERSKWEREAVSNTPDRGFSSSSAPSWGGSNAQKGGTYVVVTLLVAWSGLRSTPPQAEPRKGAWFWQDGGSRNDDQDLGFSVVNRASALTLLEWLGDEAAEGRGENVEDVEVLWTPADHDDSLDRDELDAKWPELRVL 1697
+YQ PRAGRDIYGSEGSRFHI+FD +G RRSTR RF+P G PS++ITPGDV M+GGVSA +AAVQRYNRKRF++E +GQ S+P LP R+GR GG+ Q AVVT+LQL LYCDR GGQGD+LATLDKLSQT+DVNSPRGLS LI+EVCL LLRS RDW+GGTG VK Y RSN+RGKK SP SRAKRDFNRA MRERSKWERE VSNTPDRGFSSS+APSWGG +AQK GTY V TL+VAWSGL STPP+AEPR+G WF +D R+DD+ + FSVVNR SALTLLEWLGDEAAEGRGENV DVEVLWTPAD DDSLDR++LD KWPELR L
Sbjct: 205 RYQRPRAGRDIYGSEGSRFHIRFDGGRGGRRSTRARFNPYDGDAPSTSITPGDVAMIGGVSAAVAAVQRYNRKRFVDEEGSGQRPSAP-LPPRSGR-GGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGKKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDDDRGVEFSVVNRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 539
BLAST of mRNA_P-littoralis_Contig908.16.2 vs. uniprot
Match: A0A0M0K0F2_9EUKA (Membrane protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K0F2_9EUKA) HSP 1 Score: 82.0 bits (201), Expect = 1.040e-13 Identity = 71/235 (30.21%), Postives = 109/235 (46.38%), Query Frame = 3
Query: 990 QEAVVTSLQLSLYCDRNGGQGDLLATLDKLSQTSDVNSPRGLSALISEVCLALLRSDRDWIGGTGGVKTYLPNVRSNNRGKKPSPASRAKRDFNRATMRERSKWERE--AVSNTPDRGFSSSSAPSWGGSNAQKGGTYVVVTLLVAWSGLRSTPPQAEPRKGAWFWQDGGSRNDDQDLGFSVVNRASALTLLEWLGDEAAEGRGENVEDVEVLWTPADHDDSLDRDELDAKWPEL 1688
Q LQ++ YCD Q L L+K++ ++D +S GL +L+S+ CLA+LRS +DW+ ++ + + N+ +NR + ERSKWE E A+ T A TY+V TL+V LRS A+P K + + DL ++ N A+A+++ +N+ EVLWTP D +D +DRDEL +PEL
Sbjct: 51 QPGAALCLQVACYCDDR--QNSLFGKLNKIASSADTDSELGLQSLVSDTCLAILRSSKDWLAAR--TESEIAGLLKND----------VDAAYNRLVVTERSKWEVEQKALKRT-----------------APGQPTYMVATLVVL---LRS----AQPLKPI---------SQNGDLRDALQNLAAAVSV------------DDNLLAAEVLWTPEDTNDVMDRDELFLNFPEL 226
BLAST of mRNA_P-littoralis_Contig908.16.2 vs. uniprot
Match: A0A835ZEJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ7_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 3.380e-12 Identity = 75/243 (30.86%), Postives = 106/243 (43.62%), Query Frame = 3
Query: 975 KGGNKQEAV-VTSLQLSLYCDRNGGQGDLLATLDKLSQTSDVNSPRGLSALISEVCLALLRSDRDWIGGTGGVKTYLPNVRSNNRGKKPSPASRAKRDFNRATMRERSKWEREAVSNTPDRGFSSSSAPSWGGSNAQKGGTYVVVTLLVAWSGLRSTPPQAEPRKGAWFWQDGGSRNDDQDLGFSVVNRASAL-TLLEWLGDEAAEGRGENVEDVEVLWTPADHDDSLDRDELDAKWPELRVL 1697
+GG+ V V LQ++L +G +LA L +++ ++ +S GLS +SEVCLAL+R DWI + + P A RA+ FN + ER+K ERE VS S S T VVT+++A G Q E +N ASAL +L + +A GENV VE+LWTP + +SLDR + +PEL L
Sbjct: 191 EGGSLGRGVGVVKLQVALNASDRSSRG-ILAQLKSIAERAETSSRGGLSTAVSEVCLALVRRQPDWIASASQYEYFAPRS-----------AERAEAVFNTYAIAERTKVERETVSRFGGEDLSDSRRSDGVRPEDLGKPTQAVVTIVLALKGESLKRFQLE----------------------RSINSASALRNVLTQVAGDATTDDGENVLGVELLWTPEEPWESLDRQAVLEDFPELMDL 399
BLAST of mRNA_P-littoralis_Contig908.16.2 vs. uniprot
Match: A0A7R9U031_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9U031_9VIRI) HSP 1 Score: 73.9 bits (180), Expect = 2.900e-10 Identity = 69/241 (28.63%), Postives = 105/241 (43.57%), Query Frame = 3
Query: 978 GGNKQEAVVTSLQLSLYCDRNGGQGDLLATLDKLSQTSDVNSPRGLSALISEVCLALLRSDRDWIGGTGGVKTYLPNVRSNNRGKKPSPASRAKRDFNRATMRERSKWEREAVSNTPDR-GFSSSSAPSWGGSNAQKGGTYVVVTLLVAWSGLRSTPPQAEPRKGAWFWQDGGSRNDDQDLGFSVVNRASALTLLEWLGDEAAEGRGENVEDVEVLWTPADHDDSLDRDELDAKWPELRVL 1697
GG+ + S L + G L LD ++ +D +SPRGLS +++E CL+LLR+ W + K VRS A+ FNR ++ ERSK+E E + N R G + + P+ G N Y+VVT+L + G S P + V+ +ALT L + E ++ VE+LWTP D +D+L E+ A +P + L
Sbjct: 152 GGSTYSSSAKSTVLRVQVGLLGSARSLQRELDMIAARADTSSPRGLSYVLTEACLSLLRNPDYWTYASADSKV----VRS---------IDEAEAGFNRLSLEERSKFEEETLVNVDARKGTAKAPVPASGERNE-----YIVVTILASVGGKVSVPKVQ-----------------------ASVDLRTALTNLAGVPQE-------QLQAVEILWTPQDVNDTLSSAEVVADYPRMSPL 344
BLAST of mRNA_P-littoralis_Contig908.16.2 vs. uniprot
Match: K9FLC7_9CYAN (Putative membrane protein n=3 Tax=Leptolyngbyaceae TaxID=1890438 RepID=K9FLC7_9CYAN) HSP 1 Score: 73.6 bits (179), Expect = 2.930e-10 Identity = 67/233 (28.76%), Postives = 105/233 (45.06%), Query Frame = 3
Query: 1002 VTSLQLSLYCDRNGGQGDLLATLDKLSQTSDVNSPRGLSALISEVCLALLRSDRDWI-GGTGGVKTYLPNVRSNNRGKKPSPASRAKRDFNRATMRERSKWEREAVSNTPDRGFSSSSAPSWGGSNAQKGGTYVVVTLLVAWSGLRSTPPQAEPRKGAWFWQDGGSRNDDQDLGFSVVNRASALTLLEWLGDEAAEGRGENVEDVEVLWTPADHDDSLDRDELDAKWPELRVL 1697
V LQ+ L Q DL ++L+ +SD +S GLS ++ E L+LLR W T V+T L + A+ +FNR + ERSK+ EAVSN ++ S+SA + G Y++ T++VA G + P + N +QDL +N+ A+ E + VEVLWTP ++L DE+ A++P L+++
Sbjct: 134 VARLQVGLLAKARHLQDDL----NRLATSSDTSSSAGLSKVLQESTLSLLRHPEYWAYADTETVQTKLTS---------------AEVEFNRLALMERSKFSHEAVSNVNNQISGSNSATLPDADGNLQSGEYIIATVIVAAQGKLTLP----------------NVNSEQDL-HKALNQVGAIPSDELMA-------------VEVLWTPQSSGETLTNDEVIAQYPNLKLV 317
BLAST of mRNA_P-littoralis_Contig908.16.2 vs. uniprot
Match: A0A7S0QBA5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QBA5_9EUKA) HSP 1 Score: 72.0 bits (175), Expect = 2.940e-10 Identity = 70/233 (30.04%), Postives = 97/233 (41.63%), Query Frame = 3
Query: 1011 LQLSLYC-DRNGGQGDLLATLDKLSQTSDVNSPRGLSALISEVCLALLRSDRDWIGG--TGGVKTYLPNVRSNNRGKKPSPASRAKRDFNRATMRERSKWEREAVSNTPDRGFSSSSAPSWGGSNAQKGGTYVVVTLLVAWSGLRSTPPQAEPRKGAWFWQDGGSRNDDQDLGFSVVNRASALTLLEWLGDEAAEGRGE-NVEDVEVLWTPADHDDSLDRDELDAKWPELRVL 1697
LQ++ YC DR Q L L L++T+D +S GL L+S+ CLA LRS +DW+ T K N + +NR ++ERSKWE E S T + TY+V TL+V RN + + VN L E + AA+ E N+ EVLWTP D +D +DRD++ +PEL L
Sbjct: 62 LQVACYCGDR---QNSLYGKLQSLARTADTSSYEGLQQLVSDTCLATLRSSKDWLAARTTSETKGLFSND--------------VESQYNRIVVKERSKWESEQKSLTR---------------TSAGEATYMVATLVVL------------------------LRNGSELPEVTGVNE-----LREAISQLAADVSIEDNLIAAEVLWTPEDPNDVMDRDDMFLNFPELVTL 233
BLAST of mRNA_P-littoralis_Contig908.16.2 vs. uniprot
Match: UPI001C01C322 (DUF1517 domain-containing protein n=1 Tax=Leptothoe spongobia TaxID=2651728 RepID=UPI001C01C322) HSP 1 Score: 73.6 bits (179), Expect = 3.060e-10 Identity = 63/234 (26.92%), Postives = 107/234 (45.73%), Query Frame = 3
Query: 999 VVTSLQLSLYCDRNGGQGDLLATLDKLSQTSDVNSPRGLSALISEVCLALLRSDRDWI-GGTGGVKTYLPNVRSNNRGKKPSPASRAKRDFNRATMRERSKWEREAVSNTPDRGFSSSSAPSWGGSNAQKGGTYVVVTLLVAWSGLRSTPPQAEPRKGAWFWQDGGSRNDDQDLGFSVVNRASALTLLEWLGDEAAEGRGENVEDVEVLWTPADHDDSLDRDELDAKWPELRVL 1697
V LQ+ L Q DL ++L+Q++D +S GL+ ++ E L+LLR W T + T L + A+ +FNR T+ ERSK+ RE++SN ++ ++SA Q G Y++ T++VA G + P + N +QD+ +N+ A+ + + VEVLWTP ++L DE+ A++P L+++
Sbjct: 137 AVARLQIGLLAKALHLQKDL----NRLAQSADTSSSAGLTKVLQESTLSLLRHPEYWAYADTDTITTKLTS---------------AEAEFNRLTLMERSKFSRESLSNVNNQLSGNNSAALPNADGIQPSGEYIIATVIVATQGKLTLP----------------NVNSEQDV-HKALNQIGAIPSAQLMA-------------VEVLWTPQASGETLTSDEVIAQYPNLKLV 321
BLAST of mRNA_P-littoralis_Contig908.16.2 vs. uniprot
Match: UPI00036AC502 (DUF1517 domain-containing protein n=1 Tax=Synechococcus sp. PCC 7336 TaxID=195250 RepID=UPI00036AC502) HSP 1 Score: 73.6 bits (179), Expect = 3.090e-10 Identity = 69/244 (28.28%), Postives = 112/244 (45.90%), Query Frame = 3
Query: 993 EAVVTSLQLSLYCDRNGGQGDLLATLDKLSQTSDVNSPRGLSALISEVCLALLRSDRDWIGGTGGVKTYLPNVRSNNRGKKPSPASRAKRDFNRATMRERSKWEREAVSNTPDRGFSSSSAPSWGGSNAQKG--------GTYVVVTLLVAWSGLRSTPPQAEPRKGAWFWQDGGSRNDDQDLGFSVVNRASALT-LLEWLGDEAAEGRGENVEDVEVLWTPADHDDSLDRDELDAKWPELRVL 1697
+ V+ +Q+ L L A +D+L+++SD + P GLS L+ EV L L+R D W+ G +T N RA++ N+ +++ERSK + E +SN R +++S P++ ++ + G Y+VVTLLVA+ T P VV+ A +L L LG AE + +EVLW+P D+L EL ++P+L++L
Sbjct: 127 DMTVSEIQVGLLSSARS----LQAEIDQLARSSDPSDPAGLSQLLQEVSLLLVRHDDYWVYGNAIAETMKLN--------------RAEQRINQLSLQERSKVDLETLSNVDGRRQAANSQPTFKADSSGETLAEEFSELGEYIVVTLLVAYQSTSGTLP--------------------------VVDSAESLRRCLMQLGAIPAE----RLAAMEVLWSPQAAGDTLTATELLTEYPQLQLL 322
BLAST of mRNA_P-littoralis_Contig908.16.2 vs. uniprot
Match: A0A7S0H5R7_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H5R7_9EUKA) HSP 1 Score: 73.9 bits (180), Expect = 3.370e-10 Identity = 73/238 (30.67%), Postives = 108/238 (45.38%), Query Frame = 3
Query: 999 VVTSLQLSLYC-DRNGGQGDLLATLDKLSQTSDVNSPRGLSALISEVCLALLRSDRDWIGGTGGVKTYLPNV--RSNNRGKKPSPASRAKRDFNRATMRERSKWEREAVSN-----TPDRGFSSSSAPSWGGSNAQKGGTYVVVTLLVAWSGLRSTPPQAEPRKGAWFWQDGGSRNDDQDLGFSVVNRASALTLLEWLGDEAAEGRGENVEDVEVLWTPADHDDSLDRDELDAKWPEL 1688
V LQ+++YC DR G+ L + L+ L + +D S +GL L+ E +ALLRS+ DW+ G +T+ + +SN+ + FN A ++ER+K+E E VS TPD+ PS ++VVT+LVA S P + G + A A+T A EN+ EVLWTP D D+L R+E+ K+PEL
Sbjct: 182 TVMLLQVAVYCGDR--GKNSLFSRLNNLGREADTWSEQGLKNLVQESTIALLRSEEDWVAGRS--ETFQKGMFGKSND----------VESAFNAALLQERAKFEEENVSKRSKIQTPDK-------PS-----------HMVVTILVALRDAPSLPTVS---------------------GIEDMRAALAMT-------SARASIEENLLAAEVLWTPEDSSDTLSREEVFLKFPEL 359
BLAST of mRNA_P-littoralis_Contig908.16.2 vs. uniprot
Match: A0A7S2X718_9EUKA (Hypothetical protein n=3 Tax=Lotharella TaxID=74819 RepID=A0A7S2X718_9EUKA) HSP 1 Score: 73.9 bits (180), Expect = 3.480e-10 Identity = 72/231 (31.17%), Postives = 101/231 (43.72%), Query Frame = 3
Query: 999 VVTSLQLSLYC-DRNGGQGDLLATLDKLSQTSDVNSPRGLSALISEVCLALLRSDRDWIGGTGGVKTYLPNVRSNNRGKKPSPASRAKRDFNRATMRERSKWEREAVSNTPDRGFSSSSAPSWGGSNAQKGGTYVVVTLLVAWSGLRSTPPQAEPRKGAWFWQDGGSRNDDQDLGFSVVNRASALTLLEWLGDEAAEGRGENVEDVEVLWTPADHDDSLDRDELDAKWPEL 1688
V LQ+++YC DR G L L+ L+ +D S GL L+ E LALLRS+ DW+ G +T+ + K + A FN+A ++ER+K+E E G + S Y++VT++VA LR P R G + A A+T A EN+ EVLWTP D DDSL R+E+ K+PEL
Sbjct: 187 TVMLLQVAVYCGDR--GPNSLYGRLNNLAAGADTWSEEGLRNLVQETTLALLRSEEDWVAGRS--ETFQKGMLG-----KSNDVESA---FNQALLKERAKFEEENTGRLKRVGANKPS--------------YMIVTVMVA---LRDAPNLPTIR------------------GLDEMRSALAMT-------SARASIEENLLAAEVLWTPEDPDDSLTREEVFLKFPEL 363 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig908.16.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig908.16.2 >prot_P-littoralis_Contig908.16.2 ID=prot_P-littoralis_Contig908.16.2|Name=mRNA_P-littoralis_Contig908.16.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=545bp MDFLCYNISMVPTWREVIATFFPVVTATLFRPPQAARTAGFLAPVPGVELback to top mRNA from alignment at P-littoralis_Contig908:37549..41928- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig908.16.2 ID=mRNA_P-littoralis_Contig908.16.2|Name=mRNA_P-littoralis_Contig908.16.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4380bp|location=Sequence derived from alignment at P-littoralis_Contig908:37549..41928- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig908:37549..41928- >mRNA_P-littoralis_Contig908.16.2 ID=mRNA_P-littoralis_Contig908.16.2|Name=mRNA_P-littoralis_Contig908.16.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1635bp|location=Sequence derived from alignment at P-littoralis_Contig908:37549..41928- (Pylaiella littoralis U1_48)back to top |