mRNA_P-littoralis_Contig905.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig905.4.1
Unique NamemRNA_P-littoralis_Contig905.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 4.930e-30
Identity = 54/108 (50.00%), Postives = 77/108 (71.30%), Query Frame = 2
Query:   92 RSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITPY 415
            RSS DV+++CVGA DGL VR+ KPS ++ A P  +Y GH+K  G+N QA CDA Y      MN PGS NDRTA+   G+++ +AG+P+ + +VGDAAYG +E+++ P+
Sbjct:  164 RSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPF 271          
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 8.160e-28
Identity = 49/104 (47.12%), Postives = 73/104 (70.19%), Query Frame = 2
Query:  104 DVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITPY 415
            DV+++CVGA DGL VR+ KPS ++ A P  +Y GH+   G+N QA CDA Y     TM+ PGS NDRTA+    +++ +AG+P+ + +VGDAAYG +E+++ P+
Sbjct:   16 DVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKNGFGMNFQAVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPF 119          
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.960e-26
Identity = 52/107 (48.60%), Postives = 71/107 (66.36%), Query Frame = 2
Query:   92 RSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITP 412
            RS+  VI+RCVGA DGL VR+  P  ++HA P  FY GH+K  G+N Q  C+A+Y     TMN PGS NDRTA+K  G++  ++ +P D  IVGDAAY  + +++ P
Sbjct:  175 RSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQGICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVP 281          
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 5.280e-25
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 2
Query:   92 RSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITPY 415
            RS+  VI+ CVGA DGL VR+ +PS R+H  P  FY GH+K  G+N Q  C+A Y     TMN PGS NDRTA+K   +   +  +P   +IVGDAAY  +++++ PY
Sbjct:  171 RSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQGVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPY 278          
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5JYK7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYK7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.310e-21
Identity = 48/125 (38.40%), Postives = 72/125 (57.60%), Query Frame = 2
Query:   41 QPRMSCRK*LMDFELAARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITPY 415
            Q R  C +   ++E  A+S+  V   CV A DGL V+   PS         ++ G++   GLN+QATCDANY F  M+  + G+TND TAW      + +A +P  Y+++GDAAY  ++ ++TPY
Sbjct:   45 QTRDDCARQAKEWE--AKSTGGVFSGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSSLSDSVARLPPGYYVLGDAAYPLSDHLLTPY 167          
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5JWD7_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWD7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.070e-20
Identity = 48/125 (38.40%), Postives = 72/125 (57.60%), Query Frame = 2
Query:   41 QPRMSCRK*LMDFELAARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITPY 415
            Q R  C +   ++E  A+S+  V   CV A DGL V+   PS         ++ G++   GLN+QATCDANY F  M+  + G+TND TAW      + +A +P  Y+++GDAAY  ++ ++TPY
Sbjct:   45 QTRDDCARQAKEWE--AKSTGGVFSGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSSLSDSVARLPPGYYVLGDAAYPLSDHLLTPY 167          
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5JHK3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK3_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 5.130e-20
Identity = 48/125 (38.40%), Postives = 72/125 (57.60%), Query Frame = 2
Query:   41 QPRMSCRK*LMDFELAARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITPY 415
            Q R  C +   ++E  A+S+  V   CV A DGL V+   PS         ++ G++   GLN+QATCDANY F  M+  + G+TND TAW      + +A +P  Y+++GDAAY  ++ ++TPY
Sbjct:  179 QTRDDCARQAKEWE--AKSTGGVFSGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSSLSDSVARLPPGYYVLGDAAYPLSDHLLTPY 301          
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5KAV1_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAV1_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.220e-18
Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  122 VGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITPY 415
            V A DGL ++ + P  +  A    +Y G +   G+N+QATC A+Y F  M+  +PGSTND  AW      + +A +   +HI+GDAAY   EK++TPY
Sbjct:   20 VAAVDGLFIKAKAPCAKDTANVIAYYSGSKSAYGINVQATCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLSAGFHIIGDAAYPIVEKLLTPY 117          
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5JUE6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE6_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.360e-18
Identity = 45/112 (40.18%), Postives = 66/112 (58.93%), Query Frame = 2
Query:   80 ELAARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITPY 415
            E  A+S+   I  CV A DGL V+   PS         ++ G++   GLN+QATCDANY F  M+  + G+TND TAW        +A +P  Y+++GDAAY  +++++TPY
Sbjct:  192 EWEAKSTGGAISGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSELSRAVARLPPGYYMLGDAAYPLSDQLLTPY 303          
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5JY47_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY47_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.220e-18
Identity = 45/125 (36.00%), Postives = 72/125 (57.60%), Query Frame = 2
Query:   41 QPRMSCRK*LMDFELAARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITPY 415
            Q +  C +   ++E  A+S+  V   CV A DGL V+   PS         ++ G++   GLN+QATCDANY F  M+  + G+TND TAW      + +A +P  ++++G+AAY  ++ ++TPY
Sbjct:   45 QTKDDCARQAKEWE--AKSTGGVFSGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSSLSDSVARLPPGFYVLGEAAYPLSDHLLTPY 167          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6B6_9PHAE4.930e-3050.00DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KNF2_9PHAE8.160e-2847.12DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE2.960e-2648.60DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K3F2_9PHAE5.280e-2547.22DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JYK7_9PHAE1.310e-2138.40DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JWD7_9PHAE2.070e-2038.40DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5JHK3_9PHAE5.130e-2038.40DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KAV1_9PHAE1.220e-1840.82DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JUE6_9PHAE1.360e-1840.18DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5JY47_9PHAE2.220e-1836.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig905contigP-littoralis_Contig905:26167..27185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4792.ETI53028
PFAMsDDE_Tnp_4
Model size415
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.14e-16
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota,3QI3U@4776|Peronosporales
Descriptionnuclease activity
Cds size345
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791812.4236908-UTR-P-littoralis_Contig905:26166..262361680791812.4236908-UTR-P-littoralis_Contig905:26166..26236Pylaiella littoralis U1_48UTRP-littoralis_Contig905 26167..26236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791812.4351394-CDS-P-littoralis_Contig905:26236..264011680791812.4351394-CDS-P-littoralis_Contig905:26236..26401Pylaiella littoralis U1_48CDSP-littoralis_Contig905 26237..26401 +
1680791812.4494357-CDS-P-littoralis_Contig905:27005..271851680791812.4494357-CDS-P-littoralis_Contig905:27005..27185Pylaiella littoralis U1_48CDSP-littoralis_Contig905 27006..27185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig905.4.1prot_P-littoralis_Contig905.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig905 26237..27185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig905.4.1

>prot_P-littoralis_Contig905.4.1 ID=prot_P-littoralis_Contig905.4.1|Name=mRNA_P-littoralis_Contig905.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
MDFELAARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTV
GLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIV
GDAAYGPTEKMITPY
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mRNA from alignment at P-littoralis_Contig905:26167..27185+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig905.4.1 ID=mRNA_P-littoralis_Contig905.4.1|Name=mRNA_P-littoralis_Contig905.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1019bp|location=Sequence derived from alignment at P-littoralis_Contig905:26167..27185+ (Pylaiella littoralis U1_48)
GCCATCGTTTCGTGCACGAGTCTTCATCTCAAATTCCCAACAACCACGGA TGAGCTGCAGGAAGTAGCTTATGGATTTCGAGCTCGCAGCTCGCAGCTCC GAGGACGTCATCAAGAGATGCGTGGGTGCGGCTGATGGCCTGCTAGTGCG CATTAGGAAGCCGAGCAAGAGACAGCATGCCTGTCCAGAGAGGTTCTATT TGGGGCACGAGAAGACGGTCGGGTTGAACTTGCAGGTGATCCGATTTGTT TTTTGGCTCCCTCGCTACCTACAGCAGTAGCACCGTTCCCGTTTGTTGTG GGCGATTGCAACGTGTGGGGCGCGGAGGGCTGCCGGCGTTGTTGGATGCT CGGGTTACCTGCAGTTGATATGCTCCCTCGCTCTCAGGACACAGACGTTG GGTGTGGTCCCTCGCCGCTGTTCAAGTGTACGGGGTGCTTGTATGCGTTC GACCAGCACGCTGTGCTCTCTTTCTTTCTCTCTGTGTATGCCAAAATACA GGTGTGTAGCTCTTCACCTTTTCTAATCTTCATTCGTCCGCGCGTGCTTG CGTGCGTGGCAAGAATGAGTGCCGCCGCCGCTTCTGTGTGTTGTGGCTTT TGCTGTGGCAGGCGCTCGTGTGTGAAAGCTTCTGATGTCTTTGTACTGGG CACTGGATGTATCTCCGCGTCATTTATCTCTGTCTTCTCTTTCGCAAACA GGCTGTTGTTGCCTGCATATTCACACCGGCCGGTGCCCCGGCGGCTGAAG CAAGGAAGGAAGTCGACACGCCCCAATGAAGCTTTCCAATTCGCCGTGTG ATTGTTTTGCCCTGCTATTTCTGTCGCATCGTGTTGCAGGCAACGTGCGA TGCGAACTATGTTTTCACTGGGATGACCATGAATACACCTGGCAGCACGA ACGACCGCACGGCGTGGAAAAGCGGGGGGTGGGAAGAGAAGATCGCCGGA ATCCCGGATGACTACCACATCGTGGGAGACGCGGCTTATGGTCCGACGGA AAAGATGATAACCCCGTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig905:26167..27185+

>mRNA_P-littoralis_Contig905.4.1 ID=mRNA_P-littoralis_Contig905.4.1|Name=mRNA_P-littoralis_Contig905.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig905:26167..27185+ (Pylaiella littoralis U1_48)
ATGGATTTCGAGCTCGCAGCTCGCAGCTCCGAGGACGTCATCAAGAGATG
CGTGGGTGCGGCTGATGGCCTGCTAGTGCGCATTAGGAAGCCGAGCAAGA
GACAGCATGCCTGTCCAGAGAGGTTCTATTTGGGGCACGAGAAGACGGTC
GGGTTGAACTTGCAGGCAACGTGCGATGCGAACTATGTTTTCACTGGGAT
GACCATGAATACACCTGGCAGCACGAACGACCGCACGGCGTGGAAAAGCG
GGGGGTGGGAAGAGAAGATCGCCGGAATCCCGGATGACTACCACATCGTG
GGAGACGCGGCTTATGGTCCGACGGAAAAGATGATAACCCCGTAC
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