mRNA_P-littoralis_Contig905.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE) HSP 1 Score: 121 bits (303), Expect = 4.930e-30 Identity = 54/108 (50.00%), Postives = 77/108 (71.30%), Query Frame = 2
Query: 92 RSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITPY 415
RSS DV+++CVGA DGL VR+ KPS ++ A P +Y GH+K G+N QA CDA Y MN PGS NDRTA+ G+++ +AG+P+ + +VGDAAYG +E+++ P+
Sbjct: 164 RSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPF 271
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE) HSP 1 Score: 112 bits (280), Expect = 8.160e-28 Identity = 49/104 (47.12%), Postives = 73/104 (70.19%), Query Frame = 2
Query: 104 DVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITPY 415
DV+++CVGA DGL VR+ KPS ++ A P +Y GH+ G+N QA CDA Y TM+ PGS NDRTA+ +++ +AG+P+ + +VGDAAYG +E+++ P+
Sbjct: 16 DVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKNGFGMNFQAVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPF 119
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE) HSP 1 Score: 111 bits (277), Expect = 2.960e-26 Identity = 52/107 (48.60%), Postives = 71/107 (66.36%), Query Frame = 2
Query: 92 RSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITP 412
RS+ VI+RCVGA DGL VR+ P ++HA P FY GH+K G+N Q C+A+Y TMN PGS NDRTA+K G++ ++ +P D IVGDAAY + +++ P
Sbjct: 175 RSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQGICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVP 281
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE) HSP 1 Score: 107 bits (268), Expect = 5.280e-25 Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 2
Query: 92 RSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITPY 415
RS+ VI+ CVGA DGL VR+ +PS R+H P FY GH+K G+N Q C+A Y TMN PGS NDRTA+K + + +P +IVGDAAY +++++ PY
Sbjct: 171 RSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQGVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPY 278
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5JYK7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYK7_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 1.310e-21 Identity = 48/125 (38.40%), Postives = 72/125 (57.60%), Query Frame = 2
Query: 41 QPRMSCRK*LMDFELAARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITPY 415
Q R C + ++E A+S+ V CV A DGL V+ PS ++ G++ GLN+QATCDANY F M+ + G+TND TAW + +A +P Y+++GDAAY ++ ++TPY
Sbjct: 45 QTRDDCARQAKEWE--AKSTGGVFSGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSSLSDSVARLPPGYYVLGDAAYPLSDHLLTPY 167
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5JWD7_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWD7_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 2.070e-20 Identity = 48/125 (38.40%), Postives = 72/125 (57.60%), Query Frame = 2
Query: 41 QPRMSCRK*LMDFELAARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITPY 415
Q R C + ++E A+S+ V CV A DGL V+ PS ++ G++ GLN+QATCDANY F M+ + G+TND TAW + +A +P Y+++GDAAY ++ ++TPY
Sbjct: 45 QTRDDCARQAKEWE--AKSTGGVFSGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSSLSDSVARLPPGYYVLGDAAYPLSDHLLTPY 167
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5JHK3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK3_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 5.130e-20 Identity = 48/125 (38.40%), Postives = 72/125 (57.60%), Query Frame = 2
Query: 41 QPRMSCRK*LMDFELAARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITPY 415
Q R C + ++E A+S+ V CV A DGL V+ PS ++ G++ GLN+QATCDANY F M+ + G+TND TAW + +A +P Y+++GDAAY ++ ++TPY
Sbjct: 179 QTRDDCARQAKEWE--AKSTGGVFSGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSSLSDSVARLPPGYYVLGDAAYPLSDHLLTPY 301
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5KAV1_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAV1_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 1.220e-18 Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = 2
Query: 122 VGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITPY 415
V A DGL ++ + P + A +Y G + G+N+QATC A+Y F M+ +PGSTND AW + +A + +HI+GDAAY EK++TPY
Sbjct: 20 VAAVDGLFIKAKAPCAKDTANVIAYYSGSKSAYGINVQATCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLSAGFHIIGDAAYPIVEKLLTPY 117
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5JUE6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE6_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 1.360e-18 Identity = 45/112 (40.18%), Postives = 66/112 (58.93%), Query Frame = 2
Query: 80 ELAARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITPY 415
E A+S+ I CV A DGL V+ PS ++ G++ GLN+QATCDANY F M+ + G+TND TAW +A +P Y+++GDAAY +++++TPY
Sbjct: 192 EWEAKSTGGAISGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSELSRAVARLPPGYYMLGDAAYPLSDQLLTPY 303
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Match: A0A6H5JY47_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY47_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 2.220e-18 Identity = 45/125 (36.00%), Postives = 72/125 (57.60%), Query Frame = 2
Query: 41 QPRMSCRK*LMDFELAARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTVGLNLQATCDANYVFTGMTMNTPGSTNDRTAWKSGGWEEKIAGIPDDYHIVGDAAYGPTEKMITPY 415
Q + C + ++E A+S+ V CV A DGL V+ PS ++ G++ GLN+QATCDANY F M+ + G+TND TAW + +A +P ++++G+AAY ++ ++TPY
Sbjct: 45 QTKDDCARQAKEWE--AKSTGGVFSGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSSLSDSVARLPPGFYVLGEAAYPLSDHLLTPY 167 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig905.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig905.4.1 >prot_P-littoralis_Contig905.4.1 ID=prot_P-littoralis_Contig905.4.1|Name=mRNA_P-littoralis_Contig905.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp MDFELAARSSEDVIKRCVGAADGLLVRIRKPSKRQHACPERFYLGHEKTVback to top mRNA from alignment at P-littoralis_Contig905:26167..27185+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig905.4.1 ID=mRNA_P-littoralis_Contig905.4.1|Name=mRNA_P-littoralis_Contig905.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1019bp|location=Sequence derived from alignment at P-littoralis_Contig905:26167..27185+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig905:26167..27185+ >mRNA_P-littoralis_Contig905.4.1 ID=mRNA_P-littoralis_Contig905.4.1|Name=mRNA_P-littoralis_Contig905.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig905:26167..27185+ (Pylaiella littoralis U1_48)back to top |