mRNA_P-littoralis_Contig902.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig902.4.1
Unique NamemRNA_P-littoralis_Contig902.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig902.4.1 vs. uniprot
Match: D8LSW5_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW5_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 6.110e-68
Identity = 109/121 (90.08%), Postives = 115/121 (95.04%), Query Frame = 1
Query:    1 SDVAMWAALEAVQMKDYVQALPGGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQILVMDEATANIDLHTDSLIQDVVRTSFKGKTVIMVAHRLNTIIDCDQVIVLSEGRIVEAGHPHLLL 363
            SD  MWA+LEAVQMK YVQ+L GGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQILVMDEATANID HTDSLIQDVVRTSFKGKTVIMVAHRLNT+IDCDQV+VLSEG +VEAGHPH+LL
Sbjct:  186 SDAQMWASLEAVQMKTYVQSLAGGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQDVVRTSFKGKTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPHVLL 306          
BLAST of mRNA_P-littoralis_Contig902.4.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 3.590e-63
Identity = 109/121 (90.08%), Postives = 115/121 (95.04%), Query Frame = 1
Query:    1 SDVAMWAALEAVQMKDYVQALPGGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQILVMDEATANIDLHTDSLIQDVVRTSFKGKTVIMVAHRLNTIIDCDQVIVLSEGRIVEAGHPHLLL 363
            SD  MWA+LEAVQMK YVQ+L GGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQILVMDEATANID HTDSLIQDVVRTSFKGKTVIMVAHRLNT+IDCDQV+VLSEG +VEAGHPH+LL
Sbjct: 1282 SDAQMWASLEAVQMKTYVQSLAGGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQDVVRTSFKGKTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPHVLL 1402          
BLAST of mRNA_P-littoralis_Contig902.4.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 4.880e-63
Identity = 109/121 (90.08%), Postives = 115/121 (95.04%), Query Frame = 1
Query:    1 SDVAMWAALEAVQMKDYVQALPGGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQILVMDEATANIDLHTDSLIQDVVRTSFKGKTVIMVAHRLNTIIDCDQVIVLSEGRIVEAGHPHLLL 363
            SD  MWA+LEAVQMK YVQ+L GGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQILVMDEATANID HTDSLIQDVVRTSFKGKTVIMVAHRLNT+IDCDQV+VLSEG +VEAGHPH+LL
Sbjct: 1251 SDAHMWASLEAVQMKTYVQSLAGGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQDVVRTSFKGKTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPHVLL 1371          
BLAST of mRNA_P-littoralis_Contig902.4.1 vs. uniprot
Match: A0A6H5JDN6_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN6_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 4.900e-63
Identity = 109/121 (90.08%), Postives = 115/121 (95.04%), Query Frame = 1
Query:    1 SDVAMWAALEAVQMKDYVQALPGGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQILVMDEATANIDLHTDSLIQDVVRTSFKGKTVIMVAHRLNTIIDCDQVIVLSEGRIVEAGHPHLLL 363
            SD  MWA+LEAVQMK YVQ+L GGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQILVMDEATANID HTDSLIQDVVRTSFKGKTVIMVAHRLNT+IDCDQV+VLSEG +VEAGHPH+LL
Sbjct: 1302 SDAHMWASLEAVQMKTYVQSLAGGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQDVVRTSFKGKTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPHVLL 1422          
BLAST of mRNA_P-littoralis_Contig902.4.1 vs. uniprot
Match: A0A6H5JDL0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL0_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 4.530e-53
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 1
Query:    1 SDVAMWAALEAVQMKDYVQALPGGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQILVMDEATANIDLHTDSLIQDVVRTSFKGKTVIMVAHRLNTIIDCDQV 309
            SD  MWA+LEAVQMK YVQ+LPGGLDAPVAEGGGNLSVGQRQLLCLARAVLQR+QILVMDEATANID HTDSLIQDVVRTSFKGKTVIMVAHRLNTIIDCDQV
Sbjct: 1201 SDAHMWASLEAVQMKTYVQSLPGGLDAPVAEGGGNLSVGQRQLLCLARAVLQRTQILVMDEATANIDQHTDSLIQDVVRTSFKGKTVIMVAHRLNTIIDCDQV 1303          
BLAST of mRNA_P-littoralis_Contig902.4.1 vs. uniprot
Match: A0A835YMC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMC7_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.710e-49
Identity = 89/121 (73.55%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    1 SDVAMWAALEAVQMKDYVQALPGGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQILVMDEATANIDLHTDSLIQDVVRTSFKGKTVIMVAHRLNTIIDCDQVIVLSEGRIVEAGHPHLLL 363
            SD  MWAALE+VQMK YV  LPGGL AP++E G NLSVGQRQLLCLARA+LQRS++L+MDEATANID  TDSLIQ  VRT F G TVI VAHRL TIIDCD+V+VLS G+++E GHPH LL
Sbjct: 1632 SDDMMWAALESVQMKAYVSGLPGGLSAPISESGSNLSVGQRQLLCLARAILQRSKLLLMDEATANIDTGTDSLIQAAVRTQFSGCTVITVAHRLRTIIDCDRVLVLSHGQVLEEGHPHELL 1752          
BLAST of mRNA_P-littoralis_Contig902.4.1 vs. uniprot
Match: A0A6P8IAW5_ACTTE (multidrug resistance-associated protein 4-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IAW5_ACTTE)

HSP 1 Score: 154 bits (390), Expect = 1.990e-44
Identity = 74/121 (61.16%), Postives = 97/121 (80.17%), Query Frame = 1
Query:    1 SDVAMWAALEAVQMKDYVQALPGGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQILVMDEATANIDLHTDSLIQDVVRTSFKGKTVIMVAHRLNTIIDCDQVIVLSEGRIVEAGHPHLLL 363
            +DV +W ALE VQ+K+ ++ LP GL+ P+AE G N SVGQRQL+CLARA+L  ++ILV+DEATAN+D +TDSLIQ+ +R  FK  TV+ +AHRLNTI+D D+V+VL EGR+VE   PHLLL
Sbjct:   56 ADVDLWNALEEVQLKESIEELPEGLETPLAESGSNFSVGQRQLICLARAILSHNKILVIDEATANVDHNTDSLIQETIRNKFKDCTVLTIAHRLNTIMDSDRVMVLDEGRLVEFDEPHLLL 176          
BLAST of mRNA_P-littoralis_Contig902.4.1 vs. uniprot
Match: A0A7S3Y5Z6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5Z6_HETAK)

HSP 1 Score: 157 bits (396), Expect = 3.690e-44
Identity = 79/120 (65.83%), Postives = 96/120 (80.00%), Query Frame = 1
Query:    4 DVAMWAALEAVQMKDYVQALPGGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQILVMDEATANIDLHTDSLIQDVVRTSFKGKTVIMVAHRLNTIIDCDQVIVLSEGRIVEAGHPHLLL 363
            D   W+AL AV++   V+A  GGL A VAEGGGN SVGQRQLLCL RA+L R ++LV+DEATAN+DL TD LIQD VRT F+G TVIM+AHRL+T+IDCDQ++VL +GR+VE G PH LL
Sbjct:  209 DGEFWSALAAVRLDGAVKA-QGGLGASVAEGGGNWSVGQRQLLCLGRALLARHRVLVLDEATANVDLETDGLIQDAVRTKFQGCTVIMIAHRLHTVIDCDQILVLGDGRVVEQGAPHTLL 327          
BLAST of mRNA_P-littoralis_Contig902.4.1 vs. uniprot
Match: A0A7R9QGY5_9ACAR (Hypothetical protein (Fragment) n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9QGY5_9ACAR)

HSP 1 Score: 149 bits (375), Expect = 5.420e-43
Identity = 73/121 (60.33%), Postives = 95/121 (78.51%), Query Frame = 1
Query:    1 SDVAMWAALEAVQMKDYVQALPGGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQILVMDEATANIDLHTDSLIQDVVRTSFKGKTVIMVAHRLNTIIDCDQVIVLSEGRIVEAGHPHLLL 363
            SD  MWAALE VQ++  V  LPG LDA ++EGGGN SVGQRQL+CLARA+L+ +++LV+DEATAN+D  TD+LIQ  +RT F   TV+ +AHRLNTIIDC++V+VL  G+++E   PH LL
Sbjct:   51 SDPEMWAALEEVQLRAVVDELPGRLDAELSEGGGNFSVGQRQLVCLARAILRHNRVLVLDEATANVDHQTDALIQTSIRTHFHDCTVLTIAHRLNTIIDCNRVMVLDAGQLLEFDAPHSLL 171          
BLAST of mRNA_P-littoralis_Contig902.4.1 vs. uniprot
Match: A0A1B6LUH8_9HEMI (ABC transporter domain-containing protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6LUH8_9HEMI)

HSP 1 Score: 147 bits (371), Expect = 3.540e-42
Identity = 68/121 (56.20%), Postives = 97/121 (80.17%), Query Frame = 1
Query:    1 SDVAMWAALEAVQMKDYVQALPGGLDAPVAEGGGNLSVGQRQLLCLARAVLQRSQILVMDEATANIDLHTDSLIQDVVRTSFKGKTVIMVAHRLNTIIDCDQVIVLSEGRIVEAGHPHLLL 363
            SD  +W+ALE V++K+ ++ LP GL++ V EGG NLSVGQRQL+CLARA+++ ++ILV+DEATAN+DL TD+LIQ  +R  F   TV+ +AHRLNT++D D+++V+S G +VE  HPH+LL
Sbjct:   68 SDHTIWSALEEVELKEVIEDLPQGLNSKVVEGGSNLSVGQRQLMCLARAIVRNNKILVLDEATANVDLQTDALIQKTIRHRFADCTVLTIAHRLNTVMDSDKILVMSNGCLVEFDHPHVLL 188          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig902.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSW5_ECTSI6.110e-6890.08ABC transporter domain-containing protein n=1 Tax=... [more]
D8LSW4_ECTSI3.590e-6390.08Multidrug resistance-associated protein-like prote... [more]
D8LSW3_ECTSI4.880e-6390.08Multidrug resistance-associated protein-like prote... [more]
A0A6H5JDN6_9PHAE4.900e-6390.08ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5JDL0_9PHAE4.530e-5393.20ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835YMC7_9STRA2.710e-4973.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6P8IAW5_ACTTE1.990e-4461.16multidrug resistance-associated protein 4-like n=1... [more]
A0A7S3Y5Z6_HETAK3.690e-4465.83Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9QGY5_9ACAR5.420e-4360.33Hypothetical protein (Fragment) n=1 Tax=Medioppia ... [more]
A0A1B6LUH8_9HEMI3.540e-4256.20ABC transporter domain-containing protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig902contigP-littoralis_Contig902:18316..19606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LSW3
PFAMsABC_membrane,ABC_tran
Model size363
Max annot lvl2759|Eukaryota
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.37e-63
EggNOG OGsCOG1132@1|root,KOG0054@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
Cds size351
COG categoryV
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791809.9678288-CDS-P-littoralis_Contig902:18315..183721680791809.9678288-CDS-P-littoralis_Contig902:18315..18372Pylaiella littoralis U1_48CDSP-littoralis_Contig902 18316..18372 -
1680791809.980586-CDS-P-littoralis_Contig902:18898..190931680791809.980586-CDS-P-littoralis_Contig902:18898..19093Pylaiella littoralis U1_48CDSP-littoralis_Contig902 18899..19093 -
1680791809.9938595-CDS-P-littoralis_Contig902:19495..195941680791809.9938595-CDS-P-littoralis_Contig902:19495..19594Pylaiella littoralis U1_48CDSP-littoralis_Contig902 19496..19594 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791810.0051053-UTR-P-littoralis_Contig902:19594..196061680791810.0051053-UTR-P-littoralis_Contig902:19594..19606Pylaiella littoralis U1_48UTRP-littoralis_Contig902 19595..19606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig902.4.1prot_P-littoralis_Contig902.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig902 18316..19594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig902.4.1

>prot_P-littoralis_Contig902.4.1 ID=prot_P-littoralis_Contig902.4.1|Name=mRNA_P-littoralis_Contig902.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
MWAALEAVQMKDYVQALPGGLDAPVAEGGGNLSVGQRQLLCLARAVLQRS
QILVMDEATANIDLHTDSLIQDVVRTSFKGKTVIMVAHRLNTIIDCDQVI
VLSEGRIVEAGHPHLLL
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mRNA from alignment at P-littoralis_Contig902:18316..19606-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig902.4.1 ID=mRNA_P-littoralis_Contig902.4.1|Name=mRNA_P-littoralis_Contig902.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1291bp|location=Sequence derived from alignment at P-littoralis_Contig902:18316..19606- (Pylaiella littoralis U1_48)
TCGGACGTGGCCATGTGGGCCGCCCTGGAAGCAGTTCAGATGAAGGATTA CGTGCAGGCGCTGCCCGGCGGTCTGGACGCCCCGGTGGCGGAGGGAGGCG GCAATCTGTCCGTGAGTGGTGTGTGATCTTGGTCTCACTGATACAACTTG TTGGTGCTTACGATATTTGTTTGGTTAGCTTTTTTCCTCGCCTGGCAGAT CAACCCAAAACTGATCCACCATGCCCCCCCTCCCCCCGCCGTTGTCATCG TCGTCGTTGTCGTTGTCGTTGTCTGGTCTTGCCTTCGCTATGACATAGTA GCAATATTAATGCCGCCGACCAACCGACAGTATGTTGGTCCCCCTTCGTC TCTGAGTCGCGCCCACCTGAAATATTTTTGCTCATTTCCGCCGTCTCCTT CCTTCCGTGTAGTACATACACAGTAGACGTCTCGTTGTTGCAGGTCTGCT TTCTTTCTCGGATGTACAGATTTTTCGCTTTTTCTCAATTTCGCGTTGCT CGGGTCTTGCCAGGTAGGGCAGCGGCAACTCCTGTGTCTAGCCAGGGCCG TGCTCCAGCGGTCTCAAATTCTGGTCATGGACGAGGCTACCGCCAACATC GACCTGCACACCGACTCCCTCATACAGGACGTGGTGCGGACGTCGTTCAA GGGCAAGACGGTCATCATGGTGGCTCACCGCCTCAACACCATCATCGATT GCGACCAGGTATGAGCAGTGTGCGTGCGGTACTAAAACATTTCAACCGAC AGCAAGTTCTTGTATAACGCACTGTTGTTGTTGGTGCTGGTGCTGCTGGT GCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTCGTACTGGTGCTGGTGG TGCTGGTGGTGCTGATTCTCACATTCGCTCACCGATATCGTCTCGGTCAC AAACCAGGCCCATATCATACGTGTGCACGAACGGCGTACTTCTTGTCTCT GCTGTTGAAATACATCTACGTAAGGACGAGCGACAAACGTCCGTGAAACA GCATCACACCCTTTGCTTGATTTCACCTTCAGCGCCCCTGCTTCTCAGCC TCATCCTTGCAAAGTAGAAAGAACAACACGGGCAAATCTTCCTATCAGAA ACTCCAGTATACTACAGGAACACCTGGCGATGTCGTGACGGTCGCCATGA AATGATCACCAACAGTACGTACGCACAGCGAACTGAAACTTACCAGTCGA ATCCGATCGCTGCTGCTGGAACGAACGAACGAAGGTCATCGTCCTCTCGG AGGGAAGGATCGTCGAAGCCGGACATCCTCACCTCCTGCTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig902:18316..19606-

>mRNA_P-littoralis_Contig902.4.1 ID=mRNA_P-littoralis_Contig902.4.1|Name=mRNA_P-littoralis_Contig902.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig902:18316..19606- (Pylaiella littoralis U1_48)
ATGTGGGCCGCCCTGGAAGCAGTTCAGATGAAGGATTACGTGCAGGCGCT
GCCCGGCGGTCTGGACGCCCCGGTGGCGGAGGGAGGCGGCAATCTGTCCG
TAGGGCAGCGGCAACTCCTGTGTCTAGCCAGGGCCGTGCTCCAGCGGTCT
CAAATTCTGGTCATGGACGAGGCTACCGCCAACATCGACCTGCACACCGA
CTCCCTCATACAGGACGTGGTGCGGACGTCGTTCAAGGGCAAGACGGTCA
TCATGGTGGCTCACCGCCTCAACACCATCATCGATTGCGACCAGGTCATC
GTCCTCTCGGAGGGAAGGATCGTCGAAGCCGGACATCCTCACCTCCTGCT
T
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